Wall clock time and date at job start Mon Mar 30 2020 04:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99588 * 2 1 4 4 O 1.20819 * 120.00151 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99671 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.64410 * 326.48393 * 5 3 2 7 7 C 1.54325 * 110.71807 * 203.34739 * 5 3 2 8 8 N 1.47025 * 107.26735 * 219.44329 * 7 5 3 9 9 C 1.34782 * 125.64639 * 178.90506 * 8 7 5 10 10 O 1.21684 * 119.99596 * 180.02562 * 9 8 7 11 11 C 1.46371 * 120.00244 * 0.02562 * 9 8 7 12 12 H 1.08007 * 119.99683 * 359.97438 * 11 9 8 13 13 C 1.40039 * 120.00468 * 180.02562 * 11 9 8 14 14 N 1.30673 * 119.99992 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00336 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47003 * 90.00204 * 15 13 11 17 17 H 1.48505 * 109.47019 * 209.99937 * 15 13 11 18 18 H 1.48496 * 109.47156 * 329.99769 * 15 13 11 19 19 C 1.47423 * 108.70490 * 358.94044 * 8 7 5 20 20 C 1.54909 * 104.83132 * 24.12811 * 19 8 7 21 21 H 1.09004 * 111.00103 * 204.91886 * 20 19 8 22 22 C 1.52992 * 111.00539 * 81.06534 * 20 19 8 23 23 H 1.08992 * 109.47284 * 299.99327 * 1 2 3 24 24 H 1.09003 * 109.47105 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47439 * 59.99991 * 1 2 3 26 26 H 1.09000 * 109.88193 * 338.85816 * 7 5 3 27 27 H 1.09003 * 109.88538 * 99.87400 * 7 5 3 28 28 H 0.96997 * 120.00377 * 180.02562 * 14 13 11 29 29 H 1.09000 * 110.37119 * 142.96966 * 19 8 7 30 30 H 1.08999 * 110.36738 * 265.29071 * 19 8 7 31 31 H 1.09004 * 109.47360 * 301.54176 * 22 20 19 32 32 H 1.09006 * 109.47145 * 61.53916 * 22 20 19 33 33 H 1.09001 * 109.47518 * 181.53225 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2092 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9948 0.4457 0.5623 7 6 4.0423 2.6268 0.5715 8 7 5.1892 3.0637 -0.2380 9 6 5.8772 4.2106 -0.0709 10 8 6.8133 4.4708 -0.8035 11 6 5.4983 5.1432 0.9918 12 1 4.6672 4.9124 1.6418 13 6 6.2128 6.3351 1.1651 14 7 7.2180 6.6146 0.3784 15 14 5.7297 7.5249 2.5218 16 1 6.4736 7.1894 3.7624 17 1 6.0611 8.9113 2.1055 18 1 4.2704 7.4198 2.7759 19 6 5.4616 2.0400 -1.2633 20 6 4.1141 1.2995 -1.4520 21 1 4.2732 0.2883 -1.8267 22 6 3.1818 2.0844 -2.3768 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 3.2397 3.3612 0.5040 27 1 4.3452 2.5034 1.6114 28 1 7.7131 7.4400 0.4986 29 1 5.7698 2.5107 -2.1969 30 1 6.2288 1.3487 -0.9147 31 1 3.0057 3.0757 -1.9591 32 1 3.6422 2.1810 -3.3601 33 1 2.2332 1.5557 -2.4704 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095017809.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:02 Heat of formation + Delta-G solvation = -123.321505 kcal Electronic energy + Delta-G solvation = -17813.950397 eV Core-core repulsion = 14839.829761 eV Total energy + Delta-G solvation = -2974.120636 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71165 -38.52584 -36.47456 -35.72902 -32.52715 -31.67385 -29.81832 -27.61803 -27.09587 -25.37340 -23.47839 -21.33882 -19.59069 -19.17983 -17.53378 -16.79265 -16.43231 -16.14661 -15.61541 -15.00765 -14.17065 -13.89634 -13.64810 -13.35614 -12.86309 -12.76296 -12.46760 -12.18346 -11.86033 -11.78514 -11.33260 -11.11566 -11.01427 -10.84108 -10.79418 -10.71987 -10.50647 -10.26994 -10.18492 -10.15537 -8.84749 -7.66611 -7.21580 -6.19989 -4.64192 2.28432 2.71059 3.15390 3.22296 3.26548 4.09626 4.51240 4.54807 4.64145 4.81875 4.91873 5.01731 5.09006 5.23017 5.40713 5.46829 5.58107 5.67963 5.77361 5.96117 6.14019 6.25997 6.31501 6.39302 6.48878 6.58667 6.60341 7.31945 7.44690 7.83935 8.09895 8.40234 9.02464 9.45684 10.56604 10.75430 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.031236 B = 0.006752 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.190215 B = 4145.743793 C = 4775.052000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.475 3.525 4 O -0.497 6.497 5 C -0.098 4.098 6 H 0.111 0.889 7 C 0.133 3.867 8 N -0.642 5.642 9 C 0.573 3.427 10 O -0.575 6.575 11 C -0.537 4.537 12 H 0.070 0.930 13 C 0.087 3.913 14 N -0.768 5.768 15 Si 0.908 3.092 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.264 1.264 19 C 0.119 3.881 20 C -0.089 4.089 21 H 0.090 0.910 22 C -0.145 4.145 23 H 0.062 0.938 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.269 0.731 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 -12.468 -0.235 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.383 6.383 5 C -0.117 4.117 6 H 0.129 0.871 7 C 0.008 3.992 8 N -0.383 5.383 9 C 0.380 3.620 10 O -0.457 6.457 11 C -0.574 4.574 12 H 0.088 0.912 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.732 3.268 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.005 4.005 20 C -0.109 4.109 21 H 0.108 0.892 22 C -0.202 4.202 23 H 0.081 0.919 24 H 0.116 0.884 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.193 -11.785 -0.685 15.596 hybrid contribution -0.594 0.487 0.766 1.085 sum -10.786 -11.298 0.082 15.621 Atomic orbital electron populations 1.23226 0.76803 1.03349 1.02546 1.86521 1.23084 1.33835 1.84401 1.23499 0.91732 0.81171 0.71916 1.90674 1.66844 1.36180 1.44605 1.22237 0.87056 1.02073 1.00379 0.87079 1.21524 0.91067 0.91694 0.94917 1.48686 1.33962 1.21613 1.34035 1.18015 0.81088 0.77861 0.85050 1.90613 1.30893 1.74932 1.49239 1.20906 1.17013 1.03577 1.15906 0.91217 1.25722 0.93694 0.97927 0.95898 1.70017 1.14738 1.22158 1.32752 0.86365 0.79799 0.79430 0.81188 1.19678 1.20396 1.18813 1.21892 0.93601 0.90730 0.94290 1.22356 0.96453 1.00283 0.91777 0.89157 1.21806 0.97735 1.01333 0.99374 0.91930 0.88360 0.92025 0.90620 0.92064 0.92046 0.90970 0.93090 0.91065 0.91898 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.54 10.57 -39.25 -0.41 -4.95 16 3 C 0.47 7.07 5.62 36.01 0.20 7.28 16 4 O -0.50 -8.76 14.86 -18.74 -0.28 -9.04 16 5 C -0.10 -1.46 3.32 -89.94 -0.30 -1.76 16 6 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 7 C 0.13 2.56 5.21 -3.06 -0.02 2.54 16 8 N -0.64 -14.87 3.31 -172.18 -0.57 -15.44 16 9 C 0.57 16.66 7.78 -12.99 -0.10 16.56 16 10 O -0.57 -18.87 15.27 5.20 0.08 -18.79 16 11 C -0.54 -15.47 9.06 -35.64 -0.32 -15.79 16 12 H 0.07 1.87 7.16 -52.48 -0.38 1.49 16 13 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 14 N -0.77 -23.21 11.83 55.55 0.66 -22.55 16 15 Si 0.91 20.48 29.56 -169.99 -5.02 15.45 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.26 -5.82 7.11 56.52 0.40 -5.41 16 19 C 0.12 2.24 6.37 -2.53 -0.02 2.23 16 20 C -0.09 -1.31 3.53 -88.48 -0.31 -1.63 16 21 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 22 C -0.15 -2.21 8.16 37.15 0.30 -1.90 16 23 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 26 H 0.08 1.59 6.77 -51.93 -0.35 1.24 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 29 H 0.07 1.46 7.95 -51.93 -0.41 1.05 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.31 7.73 -51.93 -0.40 0.91 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.64 7.35 -51.93 -0.38 0.26 16 LS Contribution 282.20 15.07 4.25 4.25 Total: -1.00 -35.44 282.20 -5.33 -40.76 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.44 Total: -0.98 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 0.41 Total: 11.29 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.09 Total: -37.99 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.61 Total: -32.79 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.44 -5.33 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095017809.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.557 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds