Wall clock time and date at job start Mon Mar 30 2020 03:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35983 * 117.00131 * 2 1 4 4 C 1.38565 * 120.06120 * 359.97438 * 3 2 1 5 5 C 1.38425 * 119.97609 * 180.02562 * 4 3 2 6 6 F 1.35104 * 119.95119 * 180.02562 * 5 4 3 7 7 C 1.38442 * 120.09984 * 359.97438 * 5 4 3 8 8 C 1.38256 * 120.11725 * 0.04566 * 7 5 4 9 9 C 1.50696 * 119.98688 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.47545 * 145.00226 * 9 8 7 11 11 N 1.46900 * 109.47209 * 24.99923 * 9 8 7 12 12 C 1.50706 * 109.47259 * 264.99885 * 9 8 7 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.38538 * 120.02122 * 0.23189 * 8 7 5 21 21 O 1.36039 * 120.04285 * 179.72424 * 20 8 7 22 22 H 1.09001 * 109.47030 * 300.00173 * 1 2 3 23 23 H 1.08996 * 109.47263 * 59.99824 * 1 2 3 24 24 H 1.09006 * 109.47236 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.01152 * 0.04703 * 4 3 2 26 26 H 1.07997 * 119.94227 * 180.02562 * 7 5 4 27 27 H 1.00900 * 111.00100 * 299.99420 * 11 9 8 28 28 H 1.00898 * 111.00378 * 63.95632 * 11 9 8 29 29 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 30 30 H 0.96704 * 114.00326 * 90.00593 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2930 2.3745 -0.0005 5 6 1.9233 3.6069 -0.0011 6 9 1.1882 4.7405 -0.0011 7 6 3.3058 3.6797 -0.0005 8 6 4.0614 2.5219 -0.0004 9 6 5.5661 2.6046 -0.0004 10 1 5.9751 1.7840 0.5891 11 7 5.9862 3.8848 0.5848 12 6 6.0745 2.5083 -1.4159 13 1 5.3776 2.3987 -2.2337 14 6 7.4292 2.5602 -1.6668 15 7 8.2779 2.6931 -0.6709 16 14 8.0594 2.4401 -3.4212 17 1 9.5421 2.5217 -3.4212 18 1 7.6343 1.1459 -4.0124 19 1 7.5027 3.5581 -4.2247 20 6 3.4358 1.2859 -0.0057 21 8 4.1789 0.1464 -0.0112 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 0.2144 2.3194 -0.0002 26 1 3.7949 4.6426 -0.0005 27 1 5.6196 4.6619 0.0557 28 1 5.7131 3.9464 1.5541 29 1 7.9506 2.7551 0.2401 30 1 4.3941 -0.1871 0.8706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095718404.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:33 Heat of formation + Delta-G solvation = -122.845625 kcal Electronic energy + Delta-G solvation = -17373.548542 eV Core-core repulsion = 14275.988236 eV Total energy + Delta-G solvation = -3097.560306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.04063 -41.52369 -39.26369 -37.55993 -36.30279 -33.47000 -30.72237 -30.51590 -28.47428 -27.38782 -24.72957 -23.55863 -22.12907 -19.65785 -19.28121 -18.59061 -18.23352 -17.20974 -17.14325 -16.49331 -16.32364 -16.19761 -15.78979 -15.52388 -15.35120 -14.88918 -14.48326 -13.76366 -13.60245 -13.08765 -12.88080 -12.61170 -12.51447 -12.34400 -11.97548 -11.89788 -11.56982 -10.85084 -10.47887 -9.70907 -9.39316 -9.22718 -8.38371 -6.22620 -0.04076 0.13641 1.56010 1.63291 1.82570 2.12477 2.36916 2.65401 3.06546 3.21335 3.32385 3.64839 3.86704 4.01661 4.16460 4.31580 4.34695 4.42729 4.66631 4.70315 4.85893 4.87614 5.06353 5.37479 5.53894 5.91660 6.16283 6.20498 6.62866 6.77445 6.85622 7.01494 7.65007 8.99475 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.025845 B = 0.007795 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.134797 B = 3591.335449 C = 4070.023465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.319 6.319 3 C 0.132 3.868 4 C -0.239 4.239 5 C 0.128 3.872 6 F -0.135 7.135 7 C -0.190 4.190 8 C -0.052 4.052 9 C 0.252 3.748 10 H 0.023 0.977 11 N -0.835 5.835 12 C -0.608 4.608 13 H 0.028 0.972 14 C -0.006 4.006 15 N -0.917 5.917 16 Si 1.106 2.894 17 H -0.282 1.282 18 H -0.280 1.280 19 H -0.276 1.276 20 C 0.049 3.951 21 O -0.487 6.487 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.125 0.875 25 H 0.173 0.827 26 H 0.137 0.863 27 H 0.332 0.668 28 H 0.322 0.678 29 H 0.279 0.721 30 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.276 -2.184 3.638 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.258 4.258 5 C 0.109 3.891 6 F -0.114 7.114 7 C -0.210 4.210 8 C -0.055 4.055 9 C 0.143 3.857 10 H 0.041 0.959 11 N -0.365 5.365 12 C -0.647 4.647 13 H 0.046 0.954 14 C -0.210 4.210 15 N -0.552 5.552 16 Si 0.929 3.071 17 H -0.207 1.207 18 H -0.206 1.206 19 H -0.202 1.202 20 C 0.003 3.997 21 O -0.297 6.297 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.143 0.857 25 H 0.190 0.810 26 H 0.155 0.845 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -14.134 -2.526 1.988 14.495 hybrid contribution -2.545 0.462 1.620 3.052 sum -16.679 -2.063 3.608 17.189 Atomic orbital electron populations 1.23491 0.75984 1.06110 1.02623 1.86170 1.23854 1.25083 1.88140 1.19092 0.90797 0.85336 0.96300 1.21091 1.02052 0.89562 1.13087 1.17278 0.88489 0.81999 1.01338 1.91482 1.76936 1.49140 1.93844 1.20797 0.92007 0.99529 1.08648 1.21290 0.99594 0.91452 0.93206 1.17883 0.83665 0.88963 0.95212 0.95892 1.59189 1.67732 1.04569 1.05007 1.21807 0.94217 1.57263 0.91393 0.95362 1.26843 0.93680 0.92464 1.08046 1.70674 1.38105 1.44447 1.01969 0.83085 0.75681 0.77213 0.71075 1.20729 1.20571 1.20166 1.17793 0.86734 0.86646 1.08515 1.84947 1.72178 1.38836 1.33785 0.90937 0.91664 0.85690 0.80970 0.84541 0.85391 0.86608 0.90913 0.75153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -9.13 10.28 -79.45 -0.82 -9.95 16 3 C 0.13 4.32 6.70 22.56 0.15 4.47 16 4 C -0.24 -6.83 9.01 22.39 0.20 -6.63 16 5 C 0.13 4.13 7.30 22.36 0.16 4.29 16 6 F -0.14 -4.07 17.26 44.97 0.78 -3.29 16 7 C -0.19 -7.05 9.24 22.32 0.21 -6.84 16 8 C -0.05 -2.20 4.99 -19.79 -0.10 -2.30 16 9 C 0.25 12.43 2.18 43.42 0.09 12.53 16 10 H 0.02 1.24 7.56 -2.39 -0.02 1.23 16 11 N -0.84 -37.50 7.39 -174.95 -1.29 -38.80 16 12 C -0.61 -34.69 8.71 25.60 0.22 -34.47 16 13 H 0.03 1.67 7.74 -2.91 -0.02 1.65 16 14 C -0.01 -0.37 5.39 84.65 0.46 0.09 16 15 N -0.92 -55.81 13.51 21.45 0.29 -55.52 16 16 Si 1.11 51.94 29.90 68.60 2.05 53.99 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 20 C 0.05 1.96 6.69 22.56 0.15 2.11 16 21 O -0.49 -19.69 12.42 -80.09 -0.99 -20.69 16 22 H 0.07 0.96 7.66 -2.39 -0.02 0.95 16 23 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 24 H 0.12 1.45 8.14 -2.38 -0.02 1.44 16 25 H 0.17 3.59 6.30 -2.91 -0.02 3.58 16 26 H 0.14 4.87 6.28 -2.91 -0.02 4.85 16 27 H 0.33 14.36 7.20 -89.69 -0.65 13.71 16 28 H 0.32 12.40 9.06 -89.70 -0.81 11.59 16 29 H 0.28 17.01 6.40 -92.71 -0.59 16.41 16 30 H 0.39 12.08 9.07 -74.05 -0.67 11.41 16 Total: -1.00 -69.66 265.18 1.94 -67.72 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.74 Total: 31.96 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 2.66 Total: -25.44 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -1.00 Total: -94.31 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.81 Total: -30.64 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.05 Total: 53.99 kcal Total: -69.66 1.94 -67.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095718404.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.123 kcal (2) G-P(sol) polarization free energy of solvation -69.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds