Wall clock time and date at job start Mon Mar 30 2020 04:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46851 * 2 1 4 4 N 1.46499 * 109.47243 * 120.00114 * 2 1 3 5 5 C 1.36907 * 119.99819 * 166.87960 * 4 2 1 6 6 H 1.07995 * 120.00239 * 203.41987 * 5 4 2 7 7 C 1.38981 * 120.00040 * 23.42876 * 5 4 2 8 8 N 1.31425 * 119.99825 * 43.60138 * 7 5 4 9 9 Si 1.86799 * 119.99870 * 223.60387 * 7 5 4 10 10 H 1.48496 * 109.46918 * 89.99974 * 9 7 5 11 11 H 1.48500 * 109.46924 * 209.99702 * 9 7 5 12 12 H 1.48494 * 109.46946 * 329.99475 * 9 7 5 13 13 C 1.34771 * 119.99822 * 346.88531 * 4 2 1 14 14 O 1.21780 * 120.00030 * 138.89993 * 13 4 2 15 15 C 1.46257 * 120.00236 * 319.17087 * 13 4 2 16 16 C 1.34147 * 119.24177 * 4.43033 * 15 13 4 17 17 O 1.35002 * 121.65900 * 180.61196 * 16 15 13 18 18 C 1.43245 * 116.76137 * 342.62882 * 17 16 15 19 19 C 1.53551 * 108.10250 * 45.53881 * 18 17 16 20 20 O 1.36194 * 119.24753 * 184.15885 * 15 13 4 21 21 H 1.09006 * 109.47314 * 263.42601 * 1 2 3 22 22 H 1.09004 * 109.47310 * 23.42575 * 1 2 3 23 23 H 1.09002 * 109.47245 * 143.43095 * 1 2 3 24 24 H 1.09001 * 109.46912 * 240.00176 * 2 1 3 25 25 H 1.08999 * 109.47043 * 234.91244 * 3 2 1 26 26 H 1.08995 * 109.47090 * 354.91499 * 3 2 1 27 27 H 1.08997 * 109.46822 * 114.91931 * 3 2 1 28 28 H 0.96998 * 119.99169 * 180.02562 * 8 7 5 29 29 H 1.08000 * 119.16758 * 0.59396 * 16 15 13 30 30 H 1.09004 * 109.73375 * 165.18394 * 18 17 16 31 31 H 1.08994 * 109.73569 * 285.88482 * 18 17 16 32 32 H 1.09002 * 109.74827 * 61.47385 * 19 18 17 33 33 H 1.08998 * 109.74685 * 182.21008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.3352 -1.0539 1.2871 6 1 3.6288 -1.8605 1.9425 7 6 4.2942 -0.3846 0.5361 8 7 4.2615 0.9262 0.4465 9 14 5.6295 -1.3482 -0.3459 10 1 5.1651 -1.7012 -1.7115 11 1 6.8580 -0.5192 -0.4397 12 1 5.9268 -2.5898 0.4124 13 6 1.1712 -0.9684 2.2069 14 8 1.2345 -2.0429 2.7765 15 6 0.1721 0.0183 2.6158 16 6 0.0522 1.1576 1.9178 17 8 -0.8450 2.1067 2.2593 18 6 -1.9063 1.7062 3.1340 19 6 -1.2974 0.8786 4.2751 20 8 -0.6191 -0.2431 3.6931 21 1 -0.3634 -0.1177 1.0209 22 1 -0.3634 0.9430 -0.4086 23 1 -0.3634 -0.8254 -0.6123 24 1 1.8933 -0.5138 -0.8900 25 1 2.7180 1.5882 -0.8409 26 1 1.1960 2.1262 -0.0911 27 1 2.5692 1.6407 0.9320 28 1 4.9306 1.3931 -0.0780 29 1 0.6897 1.3196 1.0612 30 1 -2.3997 2.5884 3.5420 31 1 -2.6275 1.1012 2.5847 32 1 -0.5908 1.4895 4.8369 33 1 -2.0883 0.5261 4.9371 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127084538.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:52 Heat of formation + Delta-G solvation = 30.187817 kcal Electronic energy + Delta-G solvation = -18887.660192 eV Core-core repulsion = 15920.196219 eV Total energy + Delta-G solvation = -2967.463973 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25745 -38.82509 -36.78581 -35.57383 -33.42404 -31.24397 -30.56862 -28.57810 -25.98397 -25.21924 -24.36994 -21.55942 -20.69407 -18.80200 -17.81981 -17.09256 -16.54574 -16.07425 -15.08571 -14.55582 -14.43349 -14.33314 -14.15776 -14.01263 -13.69761 -12.64765 -12.53022 -12.21039 -11.86740 -11.64128 -11.31320 -11.05930 -10.92600 -10.61679 -10.42401 -10.40223 -10.14078 -10.05359 -9.96106 -8.90127 -8.46366 -7.70105 -7.06249 -6.37372 -3.68893 2.08390 3.17108 3.28875 3.31637 3.48954 3.64814 4.15986 4.20432 4.61960 4.69914 4.93342 5.06565 5.16285 5.39852 5.57082 5.62602 5.68557 5.76139 5.83204 6.01488 6.36200 6.50309 6.52742 6.65965 6.79145 7.13353 7.24624 7.46224 7.80835 7.91176 8.11161 8.54132 9.09982 9.34055 9.82284 10.43305 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037322 B = 0.008883 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.050853 B = 3151.201700 C = 3498.053864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.463 5.463 5 C -0.331 4.331 6 H 0.100 0.900 7 C 0.051 3.949 8 N -0.815 5.815 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.542 3.458 14 O -0.550 6.550 15 C -0.100 4.100 16 C -0.037 4.037 17 O -0.308 6.308 18 C 0.010 3.990 19 C 0.015 3.985 20 O -0.291 6.291 21 H 0.118 0.882 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.123 0.877 28 H 0.268 0.732 29 H 0.240 0.760 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 5.504 -0.087 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C 0.036 3.964 3 C -0.222 4.222 4 N -0.187 5.187 5 C -0.456 4.456 6 H 0.118 0.882 7 C -0.158 4.158 8 N -0.449 5.449 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.332 3.668 14 O -0.431 6.431 15 C -0.148 4.148 16 C -0.101 4.101 17 O -0.221 6.221 18 C -0.066 4.066 19 C -0.061 4.061 20 O -0.205 6.205 21 H 0.135 0.865 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.141 0.859 28 H 0.079 0.921 29 H 0.254 0.746 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.513 5.112 0.166 9.932 hybrid contribution 0.476 -0.180 -0.537 0.740 sum -8.037 4.932 -0.371 9.437 Atomic orbital electron populations 1.24305 0.96526 1.01826 1.07504 1.20953 0.91722 0.94691 0.89066 1.23049 0.97905 0.93216 1.07984 1.43390 1.08069 1.55334 1.11887 1.19204 0.80177 1.17031 1.29209 0.88245 1.25043 0.97825 0.94310 0.98594 1.70669 1.33187 1.06761 1.34319 0.86552 0.80124 0.81260 0.80716 1.20356 1.21298 1.19160 1.17069 0.81701 0.86880 0.81167 1.90641 1.71605 1.23034 1.57796 1.21577 1.00255 1.00489 0.92514 1.26164 0.94664 0.88679 1.00635 1.86122 1.36555 1.36376 1.63025 1.23616 0.89477 1.01109 0.92372 1.23551 0.97641 0.89602 0.95345 1.86455 1.58723 1.31900 1.43465 0.86511 0.91410 0.93108 0.90742 0.91806 0.95984 0.85926 0.92121 0.74575 0.87065 0.90853 0.91144 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.62 7.59 37.16 0.28 -4.34 16 2 C 0.14 3.05 2.70 -67.93 -0.18 2.86 16 3 C -0.16 -3.39 6.26 37.16 0.23 -3.16 16 4 N -0.46 -11.88 2.43 -109.34 -0.27 -12.15 16 5 C -0.33 -9.06 9.17 -15.01 -0.14 -9.20 16 6 H 0.10 2.91 7.81 -52.49 -0.41 2.50 16 7 C 0.05 1.27 4.62 -17.45 -0.08 1.19 16 8 N -0.81 -19.95 8.18 55.50 0.45 -19.49 16 9 Si 0.89 19.60 29.69 -169.99 -5.05 14.55 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.54 14.33 6.24 -13.04 -0.08 14.25 16 14 O -0.55 -16.34 17.17 -10.07 -0.17 -16.51 16 15 C -0.10 -2.25 5.22 -37.80 -0.20 -2.45 16 16 C -0.04 -0.74 7.23 29.29 0.21 -0.53 16 17 O -0.31 -5.29 10.47 -30.80 -0.32 -5.61 16 18 C 0.01 0.13 7.29 37.44 0.27 0.41 16 19 C 0.02 0.22 7.31 37.44 0.27 0.50 16 20 O -0.29 -6.15 10.29 -45.67 -0.47 -6.62 16 21 H 0.12 2.38 2.40 -122.52 -0.29 2.09 16 22 H 0.07 1.10 6.84 -51.93 -0.35 0.75 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 1.64 8.12 -51.93 -0.42 1.21 16 25 H 0.06 1.32 7.10 -51.93 -0.37 0.95 16 26 H 0.02 0.40 6.21 -51.93 -0.32 0.08 16 27 H 0.12 2.92 5.81 -51.93 -0.30 2.62 16 28 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 29 H 0.24 4.76 0.47 -68.01 -0.03 4.73 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 256.95 15.07 3.87 3.87 Total: -1.00 -30.80 256.95 -5.11 -35.91 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.75 Total: 6.52 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 0.59 Total: -0.46 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.19 Total: -31.64 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.97 Total: -28.74 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.05 Total: 14.55 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.80 -5.11 -35.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127084538.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.098 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds