Wall clock time and date at job start Mon Mar 30 2020 04:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46851 * 2 1 4 4 N 1.46499 * 109.47243 * 120.00114 * 2 1 3 5 5 C 1.36907 * 119.99819 * 166.87960 * 4 2 1 6 6 H 1.07995 * 120.00239 * 203.41987 * 5 4 2 7 7 C 1.38981 * 120.00040 * 23.42876 * 5 4 2 8 8 N 1.31425 * 119.99825 * 43.60138 * 7 5 4 9 9 Si 1.86799 * 119.99870 * 223.60387 * 7 5 4 10 10 H 1.48496 * 109.46918 * 89.99974 * 9 7 5 11 11 H 1.48500 * 109.46924 * 209.99702 * 9 7 5 12 12 H 1.48494 * 109.46946 * 329.99475 * 9 7 5 13 13 C 1.34771 * 119.99822 * 346.88531 * 4 2 1 14 14 O 1.21780 * 120.00030 * 138.89993 * 13 4 2 15 15 C 1.46257 * 120.00236 * 319.17087 * 13 4 2 16 16 C 1.34147 * 119.24177 * 4.43033 * 15 13 4 17 17 O 1.35002 * 121.65900 * 180.61196 * 16 15 13 18 18 C 1.43245 * 116.76137 * 342.62882 * 17 16 15 19 19 C 1.53551 * 108.10250 * 45.53881 * 18 17 16 20 20 O 1.36194 * 119.24753 * 184.15885 * 15 13 4 21 21 H 1.09006 * 109.47314 * 263.42601 * 1 2 3 22 22 H 1.09004 * 109.47310 * 23.42575 * 1 2 3 23 23 H 1.09002 * 109.47245 * 143.43095 * 1 2 3 24 24 H 1.09001 * 109.46912 * 240.00176 * 2 1 3 25 25 H 1.08999 * 109.47043 * 234.91244 * 3 2 1 26 26 H 1.08995 * 109.47090 * 354.91499 * 3 2 1 27 27 H 1.08997 * 109.46822 * 114.91931 * 3 2 1 28 28 H 0.96998 * 119.99169 * 180.02562 * 8 7 5 29 29 H 1.08000 * 119.16758 * 0.59396 * 16 15 13 30 30 H 1.09004 * 109.73375 * 165.18394 * 18 17 16 31 31 H 1.08994 * 109.73569 * 285.88482 * 18 17 16 32 32 H 1.09002 * 109.74827 * 61.47385 * 19 18 17 33 33 H 1.08998 * 109.74685 * 182.21008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.3352 -1.0539 1.2871 6 1 3.6288 -1.8605 1.9425 7 6 4.2942 -0.3846 0.5361 8 7 4.2615 0.9262 0.4465 9 14 5.6295 -1.3482 -0.3459 10 1 5.1651 -1.7012 -1.7115 11 1 6.8580 -0.5192 -0.4397 12 1 5.9268 -2.5898 0.4124 13 6 1.1712 -0.9684 2.2069 14 8 1.2345 -2.0429 2.7765 15 6 0.1721 0.0183 2.6158 16 6 0.0522 1.1576 1.9178 17 8 -0.8450 2.1067 2.2593 18 6 -1.9063 1.7062 3.1340 19 6 -1.2974 0.8786 4.2751 20 8 -0.6191 -0.2431 3.6931 21 1 -0.3634 -0.1177 1.0209 22 1 -0.3634 0.9430 -0.4086 23 1 -0.3634 -0.8254 -0.6123 24 1 1.8933 -0.5138 -0.8900 25 1 2.7180 1.5882 -0.8409 26 1 1.1960 2.1262 -0.0911 27 1 2.5692 1.6407 0.9320 28 1 4.9306 1.3931 -0.0780 29 1 0.6897 1.3196 1.0612 30 1 -2.3997 2.5884 3.5420 31 1 -2.6275 1.1012 2.5847 32 1 -0.5908 1.4895 4.8369 33 1 -2.0883 0.5261 4.9371 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127084538.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:52 Heat of formation + Delta-G solvation = 9.348544 kcal Electronic energy + Delta-G solvation = -18888.563851 eV Core-core repulsion = 15920.196219 eV Total energy + Delta-G solvation = -2968.367631 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.82206 -40.47788 -38.39800 -37.33513 -35.23300 -33.03120 -32.15463 -30.01743 -27.57923 -27.01592 -25.85457 -23.31604 -22.27531 -20.42132 -19.27295 -18.74378 -18.31131 -17.60373 -16.93144 -16.11858 -16.10349 -15.92581 -15.84552 -15.54458 -15.11361 -14.43802 -14.08538 -13.93575 -13.53160 -13.24586 -12.80767 -12.74424 -12.60188 -12.37039 -12.14679 -11.89874 -11.77100 -11.66922 -11.45385 -10.81292 -10.39255 -9.61959 -8.64000 -8.29997 -5.71660 0.41247 1.38213 1.47194 1.55634 1.90965 2.27994 2.34218 2.45474 2.77205 3.20351 3.52133 3.88976 3.98729 4.03160 4.10730 4.19406 4.29144 4.41102 4.54424 4.65353 4.71150 4.91609 4.97302 5.07872 5.19934 5.45773 5.50492 5.83929 6.04060 6.08423 6.41811 6.66277 7.14408 7.39770 7.87281 8.48689 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037322 B = 0.008883 C = 0.008003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.050853 B = 3151.201700 C = 3498.053864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.132 3.868 3 C -0.151 4.151 4 N -0.469 5.469 5 C -0.384 4.384 6 H 0.060 0.940 7 C 0.037 3.963 8 N -0.812 5.812 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.524 3.476 14 O -0.610 6.610 15 C -0.131 4.131 16 C 0.008 3.992 17 O -0.307 6.307 18 C 0.007 3.993 19 C 0.004 3.996 20 O -0.325 6.325 21 H 0.105 0.895 22 H 0.101 0.899 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.279 0.721 29 H 0.238 0.762 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 7.941 -1.286 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C 0.029 3.971 3 C -0.209 4.209 4 N -0.192 5.192 5 C -0.509 4.509 6 H 0.078 0.922 7 C -0.173 4.173 8 N -0.445 5.445 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.197 1.197 12 H -0.208 1.208 13 C 0.317 3.683 14 O -0.496 6.496 15 C -0.179 4.179 16 C -0.058 4.058 17 O -0.219 6.219 18 C -0.068 4.068 19 C -0.071 4.071 20 O -0.240 6.240 21 H 0.122 0.878 22 H 0.120 0.880 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.252 0.748 30 H 0.178 0.822 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.772 7.619 -1.058 12.436 hybrid contribution 0.794 -0.806 -0.127 1.139 sum -8.978 6.813 -1.185 11.332 Atomic orbital electron populations 1.24203 0.94162 1.04091 1.07064 1.21186 0.93767 0.94904 0.87243 1.22801 0.98887 0.92940 1.06238 1.43472 1.07381 1.55343 1.12980 1.18944 0.81909 1.18049 1.31996 0.92214 1.25568 0.99145 0.95037 0.97580 1.70728 1.33578 1.07097 1.33111 0.85666 0.78233 0.79435 0.79376 1.19322 1.19656 1.20767 1.17667 0.82728 0.87015 0.80894 1.90571 1.73844 1.25473 1.59701 1.20845 1.01802 1.00386 0.94918 1.25982 0.93697 0.87235 0.98861 1.86117 1.36810 1.35444 1.63522 1.24077 0.88164 1.03335 0.91186 1.24021 0.98220 0.88601 0.96250 1.86365 1.59126 1.35163 1.43349 0.87798 0.88045 0.92122 0.91446 0.91872 0.92560 0.88857 0.90993 0.74781 0.82174 0.89462 0.91160 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.58 7.59 71.98 0.55 -8.03 16 2 C 0.13 5.70 2.70 44.99 0.12 5.82 16 3 C -0.15 -5.99 6.26 71.98 0.45 -5.54 16 4 N -0.47 -24.97 2.43 -618.03 -1.50 -26.47 16 5 C -0.38 -22.08 9.17 84.08 0.77 -21.31 16 6 H 0.06 3.81 7.81 -2.91 -0.02 3.79 16 7 C 0.04 1.87 4.62 84.93 0.39 2.26 16 8 N -0.81 -39.24 8.18 21.67 0.18 -39.06 16 9 Si 0.95 40.45 29.69 68.60 2.04 42.49 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.52 29.12 6.24 86.33 0.54 29.66 16 14 O -0.61 -38.94 17.17 9.92 0.17 -38.77 16 15 C -0.13 -5.99 5.22 23.42 0.12 -5.87 16 16 C 0.01 0.31 7.23 66.89 0.48 0.79 16 17 O -0.31 -9.38 10.47 -69.27 -0.73 -10.11 16 18 C 0.01 0.15 7.29 72.17 0.53 0.68 16 19 C 0.00 0.11 7.31 72.17 0.53 0.64 16 20 O -0.32 -13.75 10.29 -71.56 -0.74 -14.49 16 21 H 0.10 4.14 2.40 -68.69 -0.16 3.97 16 22 H 0.10 2.90 6.84 -2.39 -0.02 2.88 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.07 2.95 8.12 -2.39 -0.02 2.93 16 25 H 0.06 2.47 7.10 -2.39 -0.02 2.46 16 26 H 0.06 1.84 6.21 -2.39 -0.01 1.82 16 27 H 0.09 4.36 5.81 -2.39 -0.01 4.35 16 28 H 0.28 12.29 8.31 -92.71 -0.77 11.51 16 29 H 0.24 8.96 0.47 -17.50 -0.01 8.96 16 30 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.15 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -71.57 256.95 4.88 -66.70 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.98 Total: 20.62 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.48 Total: -0.90 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -1.33 Total: -65.54 kcal Atomic # 8 Polarization: -62.08 SS G_CDS: -1.29 Total: -63.37 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.04 Total: 42.49 kcal Total: -71.57 4.88 -66.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127084538.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.045 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds