Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37616 * 120.03003 * 2 1 4 4 C 1.39317 * 120.06008 * 179.97438 * 3 2 1 5 5 N 1.38847 * 119.93830 * 179.97438 * 4 3 2 6 6 C 1.36782 * 120.00574 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99410 * 24.54525 * 6 5 4 8 8 C 1.38853 * 120.00446 * 204.54452 * 6 5 4 9 9 N 1.31543 * 119.99679 * 15.64107 * 8 6 5 10 10 Si 1.86797 * 120.00113 * 195.63735 * 8 6 5 11 11 H 1.48503 * 109.47054 * 60.00604 * 10 8 6 12 12 H 1.48503 * 109.47050 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47395 * 300.00318 * 10 8 6 14 14 C 1.46509 * 119.99996 * 359.97438 * 5 4 3 15 15 C 1.47192 * 109.46878 * 83.66956 * 14 5 4 16 16 N 5.11521 * 105.52469 * 29.69378 * 2 1 3 17 17 C 1.39363 * 120.12571 * 359.67961 * 4 3 2 18 18 C 1.37574 * 120.06013 * 0.59806 * 17 4 3 19 19 C 1.39838 * 120.03058 * 179.97438 * 2 1 3 20 20 C 1.43198 * 120.06549 * 359.97438 * 19 2 1 21 21 N 3.48540 * 80.41312 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47254 * 270.01746 * 1 2 3 23 23 H 1.09002 * 109.47022 * 30.02636 * 1 2 3 24 24 H 1.09005 * 109.47126 * 150.02054 * 1 2 3 25 25 H 1.07991 * 119.96797 * 359.97438 * 3 2 1 26 26 H 0.97001 * 119.99773 * 179.97438 * 9 8 6 27 27 H 1.09003 * 109.47010 * 203.67585 * 14 5 4 28 28 H 1.09005 * 109.46942 * 323.66778 * 14 5 4 29 29 H 1.07993 * 119.96913 * 180.30139 * 17 4 3 30 30 H 1.07996 * 120.03242 * 179.70050 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1914 0.0000 4 6 3.5889 1.1922 0.0005 5 7 4.2812 2.3957 0.0000 6 6 5.6490 2.3980 0.0000 7 1 6.1904 1.5479 -0.3882 8 6 6.3415 3.4932 0.4990 9 7 5.7188 4.3820 1.2425 10 14 8.1573 3.7044 0.1147 11 1 8.3440 3.8014 -1.3554 12 1 8.6591 4.9438 0.7607 13 1 8.9123 2.5357 0.6336 14 6 3.5466 3.6633 -0.0017 15 6 3.1672 4.0123 1.3770 16 7 2.8761 4.2814 2.4414 17 6 4.2890 -0.0128 0.0078 18 6 3.6057 -1.2069 0.0021 19 6 2.2069 -1.2107 0.0005 20 6 1.4929 -2.4520 0.0017 21 7 0.9265 -3.4367 0.0015 22 1 -0.3634 0.0003 1.0277 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6557 2.1266 -0.0004 26 1 6.2027 5.1469 1.5914 27 1 4.1791 4.4492 -0.4146 28 1 2.6486 3.5620 -0.6112 29 1 5.3689 -0.0093 0.0131 30 1 4.1487 -2.1404 0.0028 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133325575.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = 88.786737 kcal Electronic energy + Delta-G solvation = -16079.713427 eV Core-core repulsion = 13454.392165 eV Total energy + Delta-G solvation = -2625.321262 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25238 -37.10617 -35.50740 -34.75981 -32.57143 -31.96057 -29.37818 -28.12292 -26.25640 -24.70790 -21.63364 -20.94448 -18.26148 -17.58199 -16.95385 -16.30297 -15.07317 -14.65636 -14.05043 -13.82931 -13.69298 -13.27957 -12.70831 -12.62345 -12.58240 -12.46672 -12.11239 -11.94772 -11.90332 -11.51903 -11.36213 -11.32590 -11.03739 -10.89430 -10.69672 -10.52275 -10.04056 -9.74907 -8.88998 -8.17107 -7.04743 -6.75626 -4.19041 1.71298 2.17850 2.97576 3.02909 3.04952 3.33924 3.49273 3.69232 3.85694 3.97905 4.49608 4.68188 4.75437 4.80070 5.13949 5.35877 5.41435 5.72278 5.91432 5.94620 6.08070 6.13936 6.22989 6.33652 6.45033 6.70610 6.91652 7.04806 7.14992 7.22646 7.41728 7.71839 8.19279 8.22092 8.69899 8.80921 9.09199 10.23163 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.028848 B = 0.007152 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.359749 B = 3914.165962 C = 4675.569466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.020 3.980 3 C -0.236 4.236 4 C 0.231 3.769 5 N -0.422 5.422 6 C -0.319 4.319 7 H 0.109 0.891 8 C 0.034 3.966 9 N -0.864 5.864 10 Si 0.934 3.066 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.228 3.772 15 C 0.245 3.755 16 N -0.469 5.469 17 C -0.209 4.209 18 C -0.013 4.013 19 C -0.171 4.171 20 C 0.285 3.715 21 N -0.489 5.489 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.116 0.884 26 H 0.280 0.720 27 H 0.123 0.877 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 -0.305 -5.538 5.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.016 3.984 3 C -0.260 4.260 4 C 0.112 3.888 5 N -0.106 5.106 6 C -0.447 4.447 7 H 0.127 0.873 8 C -0.173 4.173 9 N -0.498 5.498 10 Si 0.759 3.241 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.195 1.195 14 C 0.101 3.899 15 C -0.073 4.073 16 N -0.148 5.148 17 C -0.232 4.232 18 C -0.035 4.035 19 C -0.180 4.180 20 C -0.026 4.026 21 N -0.167 5.167 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.134 0.866 26 H 0.090 0.910 27 H 0.141 0.859 28 H 0.107 0.893 29 H 0.146 0.854 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.474 -0.879 -3.848 4.658 hybrid contribution 1.431 0.574 -0.326 1.576 sum -1.043 -0.305 -4.173 4.313 Atomic orbital electron populations 1.20837 0.92183 1.02260 1.02181 1.19259 0.94352 0.91272 0.93479 1.20120 0.92096 0.96990 1.16802 1.18127 0.90686 0.86664 0.93362 1.42537 1.05166 1.00476 1.62422 1.19702 0.79523 1.05646 1.39782 0.87341 1.25453 1.01142 0.96408 0.94257 1.69802 1.38228 1.13093 1.28722 0.85854 0.80930 0.78266 0.79033 1.19375 1.20729 1.19498 1.18691 0.96642 0.88971 0.85631 1.29137 0.90014 0.92750 0.95396 1.80889 1.13350 1.08934 1.11664 1.20393 0.99856 0.90040 1.12942 1.20603 0.91498 0.97364 0.94037 1.15339 0.91951 0.85650 1.25022 1.25916 0.92403 0.92646 0.91609 1.81129 1.09789 1.11709 1.14085 0.91238 0.91320 0.92206 0.86614 0.90965 0.85948 0.89323 0.85434 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.61 36.01 0.35 -1.26 16 2 C 0.02 0.33 5.91 -104.25 -0.62 -0.29 16 3 C -0.24 -4.03 8.71 -39.41 -0.34 -4.37 16 4 C 0.23 4.35 6.47 -83.86 -0.54 3.80 16 5 N -0.42 -8.39 2.68 -116.22 -0.31 -8.70 16 6 C -0.32 -6.74 8.95 -15.12 -0.14 -6.87 16 7 H 0.11 2.19 6.23 -52.49 -0.33 1.87 16 8 C 0.03 0.73 4.96 -17.45 -0.09 0.64 16 9 N -0.86 -19.78 9.41 55.49 0.52 -19.26 16 10 Si 0.93 17.15 29.58 -169.99 -5.03 12.12 16 11 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 12 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 13 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 14 C 0.23 4.09 4.80 -6.83 -0.03 4.06 16 15 C 0.25 5.11 13.05 -20.77 -0.27 4.84 16 16 N -0.47 -10.76 18.54 42.15 0.78 -9.98 16 17 C -0.21 -3.74 9.24 -39.40 -0.36 -4.10 16 18 C -0.01 -0.21 9.74 -39.21 -0.38 -0.59 16 19 C -0.17 -2.89 5.74 -106.76 -0.61 -3.50 16 20 C 0.29 4.98 13.79 -22.47 -0.31 4.67 16 21 N -0.49 -9.14 18.54 41.84 0.78 -8.36 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 24 H 0.06 0.82 7.09 -51.93 -0.37 0.45 16 25 H 0.12 1.81 6.11 -52.49 -0.32 1.49 16 26 H 0.28 6.30 8.31 -40.82 -0.34 5.96 16 27 H 0.12 2.22 6.75 -51.93 -0.35 1.87 16 28 H 0.09 1.26 6.54 -51.93 -0.34 0.92 16 29 H 0.13 2.25 6.18 -52.49 -0.32 1.92 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 272.50 15.07 4.11 4.11 Total: -1.00 -25.55 272.50 -4.93 -30.49 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -2.43 Total: 2.56 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -3.35 Total: -2.97 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 1.77 Total: -46.31 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.55 -4.93 -30.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133325575.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.277 kcal (2) G-P(sol) polarization free energy of solvation -25.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds