Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37616 * 120.03003 * 2 1 4 4 C 1.39317 * 120.06008 * 179.97438 * 3 2 1 5 5 N 1.38847 * 119.93830 * 179.97438 * 4 3 2 6 6 C 1.36782 * 120.00574 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99410 * 24.54525 * 6 5 4 8 8 C 1.38853 * 120.00446 * 204.54452 * 6 5 4 9 9 N 1.31543 * 119.99679 * 15.64107 * 8 6 5 10 10 Si 1.86797 * 120.00113 * 195.63735 * 8 6 5 11 11 H 1.48503 * 109.47054 * 60.00604 * 10 8 6 12 12 H 1.48503 * 109.47050 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47395 * 300.00318 * 10 8 6 14 14 C 1.46509 * 119.99996 * 359.97438 * 5 4 3 15 15 C 1.47192 * 109.46878 * 83.66956 * 14 5 4 16 16 N 5.11521 * 105.52469 * 29.69378 * 2 1 3 17 17 C 1.39363 * 120.12571 * 359.67961 * 4 3 2 18 18 C 1.37574 * 120.06013 * 0.59806 * 17 4 3 19 19 C 1.39838 * 120.03058 * 179.97438 * 2 1 3 20 20 C 1.43198 * 120.06549 * 359.97438 * 19 2 1 21 21 N 3.48540 * 80.41312 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47254 * 270.01746 * 1 2 3 23 23 H 1.09002 * 109.47022 * 30.02636 * 1 2 3 24 24 H 1.09005 * 109.47126 * 150.02054 * 1 2 3 25 25 H 1.07991 * 119.96797 * 359.97438 * 3 2 1 26 26 H 0.97001 * 119.99773 * 179.97438 * 9 8 6 27 27 H 1.09003 * 109.47010 * 203.67585 * 14 5 4 28 28 H 1.09005 * 109.46942 * 323.66778 * 14 5 4 29 29 H 1.07993 * 119.96913 * 180.30139 * 17 4 3 30 30 H 1.07996 * 120.03242 * 179.70050 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1914 0.0000 4 6 3.5889 1.1922 0.0005 5 7 4.2812 2.3957 0.0000 6 6 5.6490 2.3980 0.0000 7 1 6.1904 1.5479 -0.3882 8 6 6.3415 3.4932 0.4990 9 7 5.7188 4.3820 1.2425 10 14 8.1573 3.7044 0.1147 11 1 8.3440 3.8014 -1.3554 12 1 8.6591 4.9438 0.7607 13 1 8.9123 2.5357 0.6336 14 6 3.5466 3.6633 -0.0017 15 6 3.1672 4.0123 1.3770 16 7 2.8761 4.2814 2.4414 17 6 4.2890 -0.0128 0.0078 18 6 3.6057 -1.2069 0.0021 19 6 2.2069 -1.2107 0.0005 20 6 1.4929 -2.4520 0.0017 21 7 0.9265 -3.4367 0.0015 22 1 -0.3634 0.0003 1.0277 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6557 2.1266 -0.0004 26 1 6.2027 5.1469 1.5914 27 1 4.1791 4.4492 -0.4146 28 1 2.6486 3.5620 -0.6112 29 1 5.3689 -0.0093 0.0131 30 1 4.1487 -2.1404 0.0028 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133325575.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = 77.294633 kcal Electronic energy + Delta-G solvation = -16080.211762 eV Core-core repulsion = 13454.392165 eV Total energy + Delta-G solvation = -2625.819597 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65504 -38.54959 -37.00749 -36.34788 -34.06799 -33.29403 -30.80499 -29.55660 -27.54463 -26.20649 -23.04103 -22.31937 -19.72976 -19.04511 -18.39171 -17.78853 -16.51311 -16.11673 -15.42159 -15.22464 -15.04709 -14.72324 -14.21833 -14.06296 -13.86349 -13.82561 -13.58772 -13.46963 -13.17010 -13.00813 -12.82587 -12.77066 -12.41029 -12.35189 -12.17444 -12.00315 -11.42779 -11.21218 -10.41487 -9.49692 -8.55283 -8.30031 -5.80102 0.32326 0.82502 1.52183 1.54594 1.61170 1.92395 1.97085 2.26183 2.32669 2.40546 2.97936 3.22586 3.29880 3.38882 3.68906 4.09587 4.17798 4.48245 4.68039 4.75832 4.82628 4.86250 4.95344 5.04762 5.12413 5.41107 5.42496 5.58500 5.74775 5.86273 5.97135 6.27779 6.66837 6.80427 7.10753 7.31043 7.56775 8.64566 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.028848 B = 0.007152 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.359749 B = 3914.165962 C = 4675.569466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.021 3.979 3 C -0.237 4.237 4 C 0.223 3.777 5 N -0.443 5.443 6 C -0.325 4.325 7 H 0.112 0.888 8 C -0.003 4.003 9 N -0.898 5.898 10 Si 0.988 3.012 11 H -0.260 1.260 12 H -0.294 1.294 13 H -0.274 1.274 14 C 0.229 3.771 15 C 0.261 3.739 16 N -0.515 5.515 17 C -0.222 4.222 18 C -0.007 4.007 19 C -0.170 4.170 20 C 0.299 3.701 21 N -0.507 5.507 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.132 0.868 26 H 0.271 0.729 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 -1.281 -6.559 7.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.017 3.983 3 C -0.260 4.260 4 C 0.105 3.895 5 N -0.130 5.130 6 C -0.452 4.452 7 H 0.129 0.871 8 C -0.205 4.205 9 N -0.534 5.534 10 Si 0.813 3.187 11 H -0.185 1.185 12 H -0.220 1.220 13 H -0.199 1.199 14 C 0.102 3.898 15 C -0.057 4.057 16 N -0.196 5.196 17 C -0.245 4.245 18 C -0.029 4.029 19 C -0.178 4.178 20 C -0.012 4.012 21 N -0.186 5.186 22 H 0.094 0.906 23 H 0.110 0.890 24 H 0.078 0.922 25 H 0.150 0.850 26 H 0.081 0.919 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.223 -1.906 -4.892 6.160 hybrid contribution 1.521 0.654 -0.041 1.656 sum -1.702 -1.252 -4.933 5.366 Atomic orbital electron populations 1.20891 0.90090 1.03433 1.02939 1.19578 0.95938 0.90666 0.92129 1.20325 0.91500 0.98032 1.16167 1.18479 0.91581 0.86717 0.92682 1.42586 1.04900 1.01106 1.64373 1.19899 0.80520 1.05598 1.39233 0.87100 1.26019 1.03770 0.96436 0.94319 1.69903 1.38955 1.13731 1.30813 0.85025 0.77547 0.77157 0.78970 1.18459 1.21997 1.19916 1.18943 0.98046 0.88388 0.84406 1.29798 0.88639 0.91430 0.95816 1.80880 1.15163 1.10464 1.13103 1.20518 1.00051 0.90412 1.13511 1.20820 0.91487 0.97876 0.92681 1.15532 0.92219 0.85736 1.24301 1.25881 0.91887 0.92372 0.91017 1.81158 1.10475 1.12319 1.14608 0.90570 0.89043 0.92233 0.85041 0.91908 0.86337 0.85250 0.85590 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.61 71.24 0.68 -2.10 16 2 C 0.02 0.61 5.91 -19.62 -0.12 0.50 16 3 C -0.24 -7.43 8.71 22.38 0.19 -7.23 16 4 C 0.22 7.96 6.47 38.56 0.25 8.21 16 5 N -0.44 -17.13 2.68 -521.62 -1.40 -18.53 16 6 C -0.32 -13.56 8.95 84.07 0.75 -12.80 16 7 H 0.11 4.42 6.23 -2.91 -0.02 4.40 16 8 C 0.00 -0.13 4.96 84.88 0.42 0.29 16 9 N -0.90 -41.64 9.41 21.65 0.20 -41.44 16 10 Si 0.99 35.34 29.58 68.60 2.03 37.37 16 11 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 12 H -0.29 -10.96 7.11 99.48 0.71 -10.26 16 13 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 14 C 0.23 7.96 4.80 84.57 0.41 8.36 16 15 C 0.26 10.75 13.05 89.44 1.17 11.92 16 16 N -0.52 -23.74 18.54 20.00 0.37 -23.37 16 17 C -0.22 -7.54 9.24 22.38 0.21 -7.34 16 18 C -0.01 -0.21 9.74 22.51 0.22 0.01 16 19 C -0.17 -5.26 5.74 -21.25 -0.12 -5.38 16 20 C 0.30 9.64 13.79 88.33 1.22 10.86 16 21 N -0.51 -17.79 18.54 19.00 0.35 -17.43 16 22 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.09 1.78 8.08 -2.39 -0.02 1.76 16 24 H 0.06 1.43 7.09 -2.38 -0.02 1.42 16 25 H 0.13 3.68 6.11 -2.92 -0.02 3.67 16 26 H 0.27 12.55 8.31 -92.71 -0.77 11.78 16 27 H 0.12 4.25 6.75 -2.39 -0.02 4.23 16 28 H 0.13 3.33 6.54 -2.38 -0.02 3.32 16 29 H 0.13 4.30 6.18 -2.91 -0.02 4.29 16 30 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -53.57 272.50 8.02 -45.54 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.19 Total: 12.57 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 5.28 Total: 5.29 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -0.47 Total: -100.77 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Total: -53.57 8.02 -45.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133325575.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.837 kcal (2) G-P(sol) polarization free energy of solvation -53.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds