Wall clock time and date at job start Mon Mar 30 2020 04:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.81374 * 2 1 4 4 C 1.54887 * 110.75574 * 236.65793 * 2 1 3 5 5 C 1.54272 * 104.19458 * 203.74091 * 4 2 1 6 6 H 1.08998 * 110.03221 * 142.89560 * 5 4 2 7 7 C 1.50697 * 110.07459 * 264.30723 * 5 4 2 8 8 O 1.20824 * 119.99904 * 29.20696 * 7 5 4 9 9 O 1.34230 * 119.99960 * 209.21004 * 7 5 4 10 10 C 1.53873 * 106.59599 * 23.61430 * 5 4 2 11 11 H 1.09004 * 110.03412 * 119.33221 * 10 5 4 12 12 C 1.50701 * 110.03470 * 240.71051 * 10 5 4 13 13 O 1.21293 * 119.99832 * 87.94605 * 12 10 5 14 14 N 1.34769 * 120.00031 * 267.95047 * 12 10 5 15 15 C 1.37106 * 119.99957 * 179.97438 * 14 12 10 16 16 H 1.08004 * 119.99819 * 0.27461 * 15 14 12 17 17 C 1.38953 * 120.00015 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00071 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00061 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47302 * 90.00017 * 19 17 15 21 21 H 1.48499 * 109.47153 * 209.99934 * 19 17 15 22 22 H 1.48503 * 109.47080 * 329.99933 * 19 17 15 23 23 C 1.54265 * 106.60136 * 359.97438 * 10 5 4 24 24 H 1.09003 * 109.46630 * 181.88553 * 1 2 3 25 25 H 1.09000 * 109.47011 * 301.88683 * 1 2 3 26 26 H 1.08992 * 109.46792 * 61.88823 * 1 2 3 27 27 H 1.09002 * 110.48369 * 85.07268 * 4 2 1 28 28 H 1.08997 * 110.60448 * 322.47831 * 4 2 1 29 29 H 0.96699 * 117.00467 * 180.02562 * 9 7 5 30 30 H 0.96998 * 120.00465 * 359.97438 * 14 12 10 31 31 H 0.96995 * 119.99827 * 180.02562 * 18 17 15 32 32 H 1.09003 * 110.48959 * 95.06588 * 23 10 5 33 33 H 1.09005 * 110.48686 * 217.71046 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0790 -0.7961 -1.2100 5 6 3.4932 -1.2269 -0.7692 6 1 3.7121 -2.2273 -1.1425 7 6 4.5164 -0.2483 -1.2854 8 8 4.2129 0.9084 -1.4579 9 8 5.7649 -0.6618 -1.5538 10 6 3.4931 -1.2267 0.7695 11 1 3.7128 -2.2269 1.1430 12 6 4.5155 -0.2473 1.2858 13 8 4.2101 0.9138 1.4581 14 7 5.7692 -0.6616 1.5560 15 6 6.6995 0.2296 2.0252 16 1 6.4264 1.2627 2.1825 17 6 7.9919 -0.1976 2.3042 18 7 8.8837 0.6567 2.7535 19 14 8.4622 -1.9859 2.0395 20 1 8.9681 -2.1650 0.6549 21 1 9.5222 -2.3675 3.0069 22 1 7.2701 -2.8470 2.2462 23 6 2.0791 -0.7953 1.2102 24 1 -0.3633 -1.0272 0.0338 25 1 -0.3633 0.5429 0.8726 26 1 -0.3632 0.4842 -0.9064 27 1 2.1321 -0.1593 -2.0931 28 1 1.4582 -1.6699 -1.4076 29 1 6.3862 0.0022 -1.8825 30 1 6.0134 -1.5902 1.4185 31 1 9.7860 0.3585 2.9479 32 1 1.4572 -1.6689 1.4056 33 1 2.1324 -0.1585 2.0933 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165338380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:48 Heat of formation + Delta-G solvation = -141.011059 kcal Electronic energy + Delta-G solvation = -18361.166708 eV Core-core repulsion = 15386.278995 eV Total energy + Delta-G solvation = -2974.887713 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56252 -38.44120 -36.90328 -35.43624 -33.93851 -31.89626 -31.28457 -29.03769 -26.00037 -24.70448 -22.70360 -20.73753 -19.64830 -19.07030 -18.16898 -17.56242 -16.59718 -15.72129 -15.35410 -14.83452 -14.48590 -14.36976 -13.46884 -13.25899 -13.03430 -12.81716 -12.61525 -12.30391 -11.86162 -11.51533 -11.44081 -11.14182 -10.99752 -10.86715 -10.75570 -10.57933 -10.37853 -10.26840 -9.98820 -9.92220 -9.54948 -8.45463 -8.17499 -6.32500 -3.83079 2.70686 3.02898 3.08218 3.15244 3.41247 3.63435 4.09963 4.55266 4.58046 4.78109 5.05814 5.23839 5.43746 5.44771 5.53881 5.63048 5.67816 5.72415 5.84989 5.90943 5.96224 6.03319 6.14578 6.24881 6.33599 6.54598 6.78959 7.04016 7.55803 8.13498 8.40187 8.58339 8.94010 9.41794 9.82267 10.80333 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.008209 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.839079 B = 3410.167580 C = 3602.735392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.093 0.907 4 C -0.103 4.103 5 C -0.073 4.073 6 H 0.103 0.897 7 C 0.480 3.520 8 O -0.495 6.495 9 O -0.515 6.515 10 C -0.097 4.097 11 H 0.090 0.910 12 C 0.439 3.561 13 O -0.558 6.558 14 N -0.581 5.581 15 C -0.303 4.303 16 H 0.118 0.882 17 C 0.043 3.957 18 N -0.880 5.880 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.097 4.097 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.409 0.591 30 H 0.371 0.629 31 H 0.273 0.727 32 H 0.067 0.933 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.098 -8.964 -7.535 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.112 0.888 4 C -0.140 4.140 5 C -0.093 4.093 6 H 0.121 0.879 7 C 0.321 3.679 8 O -0.381 6.381 9 O -0.327 6.327 10 C -0.120 4.120 11 H 0.108 0.892 12 C 0.224 3.776 13 O -0.440 6.440 14 N -0.219 5.219 15 C -0.432 4.432 16 H 0.136 0.864 17 C -0.160 4.160 18 N -0.519 5.519 19 Si 0.706 3.294 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.135 4.135 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.268 0.732 30 H 0.204 0.796 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.427 -8.090 -7.239 15.761 hybrid contribution 1.221 -1.017 -0.295 1.617 sum -10.205 -9.107 -7.533 15.615 Atomic orbital electron populations 1.21736 0.95200 1.01248 1.01550 1.22122 0.94686 1.00994 0.93484 0.88832 1.22394 0.92262 1.00061 0.99302 1.21578 0.93397 0.98357 0.95954 0.87920 1.23082 0.82071 0.88623 0.74169 1.90697 1.80139 1.19473 1.47819 1.84462 1.22647 1.47106 1.78496 1.21828 0.97432 1.00257 0.92458 0.89203 1.19653 0.83245 0.89328 0.85358 1.90599 1.79169 1.18282 1.55992 1.42265 1.10067 1.10611 1.58974 1.19436 0.89503 0.94534 1.39747 0.86421 1.25037 0.95595 0.98127 0.97242 1.69628 1.04281 1.34390 1.43644 0.86670 0.79019 0.84607 0.79131 1.19402 1.20282 1.19503 1.22271 0.92517 0.99450 0.99280 0.92958 0.92620 0.92894 0.90774 0.90471 0.73229 0.79572 0.91609 0.91438 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.27 37.16 0.34 -1.23 16 2 C -0.09 -1.38 3.41 -88.64 -0.30 -1.68 16 3 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 4 C -0.10 -1.35 5.48 -25.07 -0.14 -1.49 16 5 C -0.07 -1.10 3.40 -90.65 -0.31 -1.41 16 6 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 7 C 0.48 8.92 5.34 36.00 0.19 9.11 16 8 O -0.50 -10.85 16.35 -20.69 -0.34 -11.19 16 9 O -0.52 -8.79 13.42 -39.26 -0.53 -9.32 16 10 C -0.10 -1.64 3.29 -90.65 -0.30 -1.94 16 11 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 12 C 0.44 10.08 4.79 -10.99 -0.05 10.03 16 13 O -0.56 -15.24 15.16 4.52 0.07 -15.17 16 14 N -0.58 -13.95 5.09 -10.96 -0.06 -14.01 16 15 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 16 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 17 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 18 N -0.88 -25.70 13.96 55.50 0.77 -24.93 16 19 Si 0.88 19.49 27.74 -169.99 -4.71 14.78 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 23 C -0.10 -1.47 5.48 -25.08 -0.14 -1.61 16 24 H 0.05 0.50 8.12 -51.93 -0.42 0.07 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.02 7.44 -51.93 -0.39 0.64 16 28 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 29 H 0.41 5.92 9.10 45.56 0.41 6.34 16 30 H 0.37 7.99 5.76 -40.82 -0.24 7.76 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 32 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 33 H 0.08 1.40 7.43 -51.93 -0.39 1.01 16 LS Contribution 278.91 15.07 4.20 4.20 Total: -1.00 -34.42 278.91 -5.06 -39.48 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -3.52 Total: 14.05 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.95 Total: 2.11 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.72 Total: -38.93 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.80 Total: -35.68 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.42 -5.06 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165338380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.536 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds