Wall clock time and date at job start Mon Mar 30 2020 04:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.81374 * 2 1 4 4 C 1.54887 * 110.75574 * 236.65793 * 2 1 3 5 5 C 1.54272 * 104.19458 * 203.74091 * 4 2 1 6 6 H 1.08998 * 110.03221 * 142.89560 * 5 4 2 7 7 C 1.50697 * 110.07459 * 264.30723 * 5 4 2 8 8 O 1.20824 * 119.99904 * 29.20696 * 7 5 4 9 9 O 1.34230 * 119.99960 * 209.21004 * 7 5 4 10 10 C 1.53873 * 106.59599 * 23.61430 * 5 4 2 11 11 H 1.09004 * 110.03412 * 119.33221 * 10 5 4 12 12 C 1.50701 * 110.03470 * 240.71051 * 10 5 4 13 13 O 1.21293 * 119.99832 * 87.94605 * 12 10 5 14 14 N 1.34769 * 120.00031 * 267.95047 * 12 10 5 15 15 C 1.37106 * 119.99957 * 179.97438 * 14 12 10 16 16 H 1.08004 * 119.99819 * 0.27461 * 15 14 12 17 17 C 1.38953 * 120.00015 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00071 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00061 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47302 * 90.00017 * 19 17 15 21 21 H 1.48499 * 109.47153 * 209.99934 * 19 17 15 22 22 H 1.48503 * 109.47080 * 329.99933 * 19 17 15 23 23 C 1.54265 * 106.60136 * 359.97438 * 10 5 4 24 24 H 1.09003 * 109.46630 * 181.88553 * 1 2 3 25 25 H 1.09000 * 109.47011 * 301.88683 * 1 2 3 26 26 H 1.08992 * 109.46792 * 61.88823 * 1 2 3 27 27 H 1.09002 * 110.48369 * 85.07268 * 4 2 1 28 28 H 1.08997 * 110.60448 * 322.47831 * 4 2 1 29 29 H 0.96699 * 117.00467 * 180.02562 * 9 7 5 30 30 H 0.96998 * 120.00465 * 359.97438 * 14 12 10 31 31 H 0.96995 * 119.99827 * 180.02562 * 18 17 15 32 32 H 1.09003 * 110.48959 * 95.06588 * 23 10 5 33 33 H 1.09005 * 110.48686 * 217.71046 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9174 1.0189 0.0000 4 6 2.0790 -0.7961 -1.2100 5 6 3.4932 -1.2269 -0.7692 6 1 3.7121 -2.2273 -1.1425 7 6 4.5164 -0.2483 -1.2854 8 8 4.2129 0.9084 -1.4579 9 8 5.7649 -0.6618 -1.5538 10 6 3.4931 -1.2267 0.7695 11 1 3.7128 -2.2269 1.1430 12 6 4.5155 -0.2473 1.2858 13 8 4.2101 0.9138 1.4581 14 7 5.7692 -0.6616 1.5560 15 6 6.6995 0.2296 2.0252 16 1 6.4264 1.2627 2.1825 17 6 7.9919 -0.1976 2.3042 18 7 8.8837 0.6567 2.7535 19 14 8.4622 -1.9859 2.0395 20 1 8.9681 -2.1650 0.6549 21 1 9.5222 -2.3675 3.0069 22 1 7.2701 -2.8470 2.2462 23 6 2.0791 -0.7953 1.2102 24 1 -0.3633 -1.0272 0.0338 25 1 -0.3633 0.5429 0.8726 26 1 -0.3632 0.4842 -0.9064 27 1 2.1321 -0.1593 -2.0931 28 1 1.4582 -1.6699 -1.4076 29 1 6.3862 0.0022 -1.8825 30 1 6.0134 -1.5902 1.4185 31 1 9.7860 0.3585 2.9479 32 1 1.4572 -1.6689 1.4056 33 1 2.1324 -0.1585 2.0933 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165338380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:48 Heat of formation + Delta-G solvation = -168.106177 kcal Electronic energy + Delta-G solvation = -18362.341640 eV Core-core repulsion = 15386.278995 eV Total energy + Delta-G solvation = -2976.062646 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.01216 -40.10012 -38.35557 -36.91153 -35.98748 -33.83594 -32.61613 -30.28808 -27.49394 -26.26097 -24.12532 -22.27139 -21.00814 -20.78176 -19.80814 -19.10770 -18.18292 -17.28732 -16.91773 -16.55772 -15.81993 -15.61009 -15.21880 -15.02256 -14.61393 -14.29360 -14.21869 -13.69660 -13.05899 -12.81472 -12.75024 -12.66066 -12.43565 -12.43506 -12.04123 -11.99708 -11.88864 -11.60869 -11.47663 -11.40006 -11.25677 -10.35567 -10.25739 -8.43847 -6.04615 1.25910 1.29420 1.35068 1.43682 1.86214 2.12772 2.21694 2.91721 3.09998 3.43211 3.61534 3.91259 4.23875 4.28422 4.34735 4.47065 4.50771 4.60283 4.67826 4.82216 4.96381 5.03284 5.10182 5.14160 5.39951 5.42459 5.53003 5.62947 5.70991 5.91674 6.55325 6.85262 7.00713 7.36148 7.93978 8.73878 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.008209 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.839079 B = 3410.167580 C = 3602.735392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.033 0.967 4 C -0.095 4.095 5 C -0.072 4.072 6 H 0.155 0.845 7 C 0.469 3.531 8 O -0.544 6.544 9 O -0.512 6.512 10 C -0.094 4.094 11 H 0.136 0.864 12 C 0.437 3.563 13 O -0.613 6.613 14 N -0.579 5.579 15 C -0.326 4.326 16 H 0.047 0.953 17 C -0.011 4.011 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.253 1.253 21 H -0.275 1.275 22 H -0.231 1.231 23 C -0.095 4.095 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.129 0.871 29 H 0.415 0.585 30 H 0.389 0.611 31 H 0.279 0.721 32 H 0.119 0.881 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.583 -14.023 -8.684 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 H 0.052 0.948 4 C -0.132 4.132 5 C -0.091 4.091 6 H 0.173 0.827 7 C 0.312 3.688 8 O -0.433 6.433 9 O -0.324 6.324 10 C -0.116 4.116 11 H 0.154 0.846 12 C 0.225 3.775 13 O -0.497 6.497 14 N -0.220 5.220 15 C -0.455 4.455 16 H 0.065 0.935 17 C -0.210 4.210 18 N -0.574 5.574 19 Si 0.783 3.217 20 H -0.177 1.177 21 H -0.200 1.200 22 H -0.154 1.154 23 C -0.133 4.133 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.275 0.725 30 H 0.225 0.775 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.925 -13.168 -8.396 20.272 hybrid contribution 1.675 0.750 0.080 1.837 sum -11.250 -12.418 -8.316 18.706 Atomic orbital electron populations 1.21688 0.92339 1.03343 1.01599 1.22060 0.97062 0.98138 0.94605 0.94806 1.22471 0.91653 1.01431 0.97628 1.21896 0.93178 0.99853 0.94212 0.82714 1.24094 0.82765 0.88832 0.73086 1.90689 1.80919 1.21818 1.49881 1.84445 1.22543 1.47296 1.78135 1.21994 0.95716 1.00144 0.93701 0.84607 1.20989 0.83721 0.89826 0.82983 1.90586 1.80203 1.21495 1.57465 1.42069 1.09808 1.10666 1.59446 1.18931 0.91556 0.92789 1.42273 0.93475 1.26110 0.94483 1.04643 0.95771 1.69812 1.05053 1.37782 1.44733 0.85392 0.79915 0.76777 0.79652 1.17725 1.20045 1.15385 1.22357 0.92388 1.00761 0.97799 0.89601 0.93316 0.92366 0.92082 0.85297 0.72494 0.77484 0.91103 0.86267 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.27 71.98 0.67 -1.93 16 2 C -0.10 -2.78 3.41 -9.51 -0.03 -2.81 16 3 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.09 -2.13 5.48 31.67 0.17 -1.96 16 5 C -0.07 -1.89 3.40 -10.82 -0.04 -1.93 16 6 H 0.16 2.55 8.14 -2.39 -0.02 2.53 16 7 C 0.47 17.08 5.34 71.23 0.38 17.46 16 8 O -0.54 -24.83 16.35 23.82 0.39 -24.44 16 9 O -0.51 -16.83 13.42 -51.42 -0.69 -17.52 16 10 C -0.09 -2.85 3.29 -10.82 -0.04 -2.88 16 11 H 0.14 2.94 8.14 -2.38 -0.02 2.92 16 12 C 0.44 20.24 4.79 87.66 0.42 20.66 16 13 O -0.61 -35.65 15.16 -2.09 -0.03 -35.68 16 14 N -0.58 -27.73 5.09 -306.98 -1.56 -29.29 16 15 C -0.33 -19.42 10.16 84.04 0.85 -18.57 16 16 H 0.05 3.40 7.39 -2.91 -0.02 3.38 16 17 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 18 N -0.93 -56.75 13.96 21.66 0.30 -56.45 16 19 Si 0.96 38.85 27.74 68.60 1.90 40.75 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 23 C -0.10 -2.62 5.48 31.66 0.17 -2.45 16 24 H 0.09 1.15 8.12 -2.39 -0.02 1.13 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.57 7.44 -2.39 -0.02 1.55 16 28 H 0.13 1.65 8.05 -2.39 -0.02 1.63 16 29 H 0.42 12.14 9.10 -74.06 -0.67 11.46 16 30 H 0.39 15.56 5.76 -92.71 -0.53 15.03 16 31 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.12 2.10 8.03 -2.39 -0.02 2.08 16 33 H 0.04 1.53 7.43 -2.38 -0.02 1.51 16 Total: -1.00 -85.50 278.91 3.21 -82.28 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.13 Total: 34.92 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 3.03 Total: 5.43 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -1.26 Total: -85.74 kcal Atomic # 8 Polarization: -77.32 SS G_CDS: -0.33 Total: -77.65 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.75 kcal Total: -85.50 3.21 -82.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165338380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.823 kcal (2) G-P(sol) polarization free energy of solvation -85.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds