Wall clock time and date at job start Mon Mar 30 2020 04:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47598 * 2 1 4 4 C 1.50702 * 109.47496 * 239.99534 * 2 1 3 5 5 O 1.20820 * 120.00499 * 240.00042 * 4 2 1 6 6 O 1.34236 * 119.99365 * 59.99869 * 4 2 1 7 7 C 1.50699 * 109.47255 * 119.99435 * 2 1 3 8 8 O 1.21290 * 120.00032 * 100.13811 * 7 2 1 9 9 N 1.34770 * 120.00513 * 280.14185 * 7 2 1 10 10 C 1.46501 * 119.99745 * 5.94426 * 9 7 2 11 11 C 1.50700 * 109.47411 * 275.91580 * 10 9 7 12 12 H 1.08002 * 119.99730 * 359.72438 * 11 10 9 13 13 C 1.37871 * 120.00111 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00459 * 359.72444 * 13 11 10 15 15 Si 1.86807 * 120.00011 * 179.72167 * 13 11 10 16 16 H 1.48501 * 109.46964 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46673 * 119.99977 * 15 13 11 18 18 H 1.48497 * 109.47420 * 239.99986 * 15 13 11 19 19 C 1.46504 * 120.00363 * 185.94381 * 9 7 2 20 20 C 1.52998 * 117.49748 * 17.63672 * 19 9 7 21 21 C 1.52995 * 117.50219 * 308.97486 * 19 9 7 22 22 H 1.08998 * 109.46971 * 172.53806 * 1 2 3 23 23 H 1.09002 * 109.46942 * 292.53785 * 1 2 3 24 24 H 1.08994 * 109.47200 * 52.53688 * 1 2 3 25 25 H 0.96702 * 116.99569 * 179.97438 * 6 4 2 26 26 H 1.09007 * 109.47406 * 155.91324 * 10 9 7 27 27 H 1.09002 * 109.46964 * 35.91893 * 10 9 7 28 28 H 0.96998 * 120.00619 * 179.97438 * 14 13 11 29 29 H 1.09000 * 115.54730 * 163.29522 * 19 9 7 30 30 H 1.08995 * 117.49780 * 359.97438 * 20 19 9 31 31 H 1.08996 * 117.49965 * 145.01550 * 20 19 9 32 32 H 1.08998 * 117.49883 * 214.97901 * 21 19 9 33 33 H 1.09001 * 117.49312 * 359.97167 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 6 2.0323 -0.7103 1.2305 8 8 2.4088 -1.8608 1.1554 9 7 2.0632 -0.0672 2.4145 10 6 1.4890 1.2753 2.5340 11 6 2.5052 2.2974 2.0939 12 1 3.4827 1.9791 1.7628 13 6 2.1888 3.6391 2.1187 14 7 0.9983 4.0267 2.5213 15 14 3.4512 4.9065 1.5805 16 1 4.7027 4.2175 1.1753 17 1 2.9173 5.6792 0.4301 18 1 3.7367 5.8304 2.7075 19 6 2.6710 -0.7105 3.5820 20 6 3.6034 -1.8970 3.3292 21 6 2.2127 -2.1293 3.9253 22 1 -0.3633 -1.0189 -0.1335 23 1 -0.3633 0.3939 0.9492 24 1 -0.3633 0.6250 -0.8157 25 1 2.0542 -0.7407 -3.2088 26 1 1.2127 1.4613 3.5720 27 1 0.6030 1.3489 1.9035 28 1 0.7758 4.9706 2.5391 29 1 2.9154 -0.0461 4.4108 30 1 3.7642 -2.1991 2.2944 31 1 4.4608 -2.0134 3.9920 32 1 2.1558 -2.3984 4.9800 33 1 1.4586 -2.5838 3.2828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165460926.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:37 Heat of formation + Delta-G solvation = -109.159069 kcal Electronic energy + Delta-G solvation = -18150.289139 eV Core-core repulsion = 15176.782632 eV Total energy + Delta-G solvation = -2973.506507 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.93545 -40.57843 -37.51526 -36.81186 -36.29756 -34.43525 -33.36580 -28.99097 -26.52986 -24.99380 -24.45985 -23.23908 -22.45601 -19.77922 -19.03473 -18.63706 -17.84638 -17.69023 -16.78949 -16.44039 -16.29463 -15.76227 -15.46214 -14.75955 -14.61952 -14.25869 -13.88651 -13.61091 -13.36139 -12.98144 -12.95298 -12.76783 -12.50556 -12.45251 -12.34873 -12.10720 -11.99444 -11.44726 -11.37387 -11.19145 -10.60341 -10.22201 -9.20382 -8.18766 -6.33495 1.20608 1.41639 1.45720 1.51246 1.57370 1.84979 2.38111 2.52412 3.08780 3.10391 3.40349 3.94947 4.00029 4.12687 4.15408 4.24203 4.49955 4.69138 4.73809 4.81999 4.84359 4.94540 5.06089 5.14669 5.35416 5.42525 5.60487 5.69960 5.95403 6.06402 6.51047 6.81049 7.02319 7.29199 7.40842 8.85768 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.010328 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.292495 B = 2710.481856 C = 3642.806380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 H 0.138 0.862 4 C 0.494 3.506 5 O -0.521 6.521 6 O -0.502 6.502 7 C 0.516 3.484 8 O -0.549 6.549 9 N -0.570 5.570 10 C 0.243 3.757 11 C -0.549 4.549 12 H 0.049 0.951 13 C 0.030 3.970 14 N -0.912 5.912 15 Si 0.949 3.051 16 H -0.275 1.275 17 H -0.274 1.274 18 H -0.280 1.280 19 C 0.064 3.936 20 C -0.197 4.197 21 C -0.173 4.173 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.428 0.572 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.269 0.731 29 H 0.135 0.865 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 -4.970 -3.589 6.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.131 4.131 3 H 0.156 0.844 4 C 0.336 3.664 5 O -0.409 6.409 6 O -0.316 6.316 7 C 0.304 3.696 8 O -0.429 6.429 9 N -0.299 5.299 10 C 0.123 3.877 11 C -0.588 4.588 12 H 0.067 0.933 13 C -0.171 4.171 14 N -0.551 5.551 15 Si 0.775 3.225 16 H -0.200 1.200 17 H -0.200 1.200 18 H -0.206 1.206 19 C -0.040 4.040 20 C -0.235 4.235 21 C -0.211 4.211 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.290 0.710 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.140 0.860 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.932 -5.438 -3.230 6.393 hybrid contribution 0.904 0.641 -0.602 1.261 sum -0.027 -4.797 -3.832 6.139 Atomic orbital electron populations 1.21694 0.88186 1.03416 1.05177 1.21033 1.01420 1.02382 0.88227 0.84425 1.22746 0.76818 0.81727 0.85143 1.90782 1.36184 1.26584 1.87356 1.84477 1.72070 1.58885 1.16188 1.20082 0.78643 0.86153 0.84755 1.90587 1.48768 1.17853 1.85692 1.47564 1.56469 1.18234 1.07644 1.19403 0.93960 0.76344 0.98036 1.21661 1.00048 0.91815 1.45266 0.93266 1.25524 0.96889 0.99877 0.94806 1.69984 1.21002 1.17133 1.46957 0.85634 0.79421 0.79177 0.78227 1.19987 1.19987 1.20554 1.21835 1.02192 0.89317 0.90694 1.23630 0.94231 1.01717 1.03902 1.23208 0.97685 0.98418 1.01810 0.91619 0.90483 0.88367 0.71012 0.95491 0.93264 0.92162 0.84699 0.87929 0.87364 0.86032 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.82 71.98 0.63 -3.26 16 2 C -0.11 -4.02 2.37 -12.29 -0.03 -4.05 16 3 H 0.14 5.44 6.46 -2.39 -0.02 5.43 16 4 C 0.49 17.36 7.58 71.24 0.54 17.90 16 5 O -0.52 -22.02 15.16 29.59 0.45 -21.57 16 6 O -0.50 -12.83 13.35 -51.48 -0.69 -13.52 16 7 C 0.52 21.89 6.52 87.66 0.57 22.46 16 8 O -0.55 -25.40 10.22 19.94 0.20 -25.20 16 9 N -0.57 -23.97 2.84 -802.13 -2.28 -26.25 16 10 C 0.24 11.01 4.89 85.63 0.42 11.43 16 11 C -0.55 -27.29 8.06 25.60 0.21 -27.08 16 12 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 13 C 0.03 1.52 5.46 84.65 0.46 1.98 16 14 N -0.91 -47.40 13.29 21.45 0.28 -47.12 16 15 Si 0.95 40.25 29.54 68.60 2.03 42.28 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 C 0.06 2.40 6.58 44.99 0.30 2.69 16 20 C -0.20 -7.02 9.63 30.62 0.29 -6.72 16 21 C -0.17 -5.67 9.86 30.62 0.30 -5.37 16 22 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 23 H 0.08 2.49 5.86 -2.39 -0.01 2.48 16 24 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.43 6.59 9.10 -74.06 -0.67 5.92 16 26 H 0.03 1.29 8.03 -2.38 -0.02 1.27 16 27 H 0.05 2.22 4.85 -2.39 -0.01 2.21 16 28 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 29 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 30 H 0.10 4.38 5.31 -2.83 -0.02 4.37 16 31 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.08 2.76 7.50 -2.39 -0.02 2.75 16 Total: -1.00 -63.32 279.41 4.16 -59.17 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.46 Total: 22.23 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 3.70 Total: 9.98 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.99 Total: -73.36 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -0.03 Total: -60.29 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -63.32 4.16 -59.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165460926.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.994 kcal (2) G-P(sol) polarization free energy of solvation -63.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds