Wall clock time and date at job start Mon Mar 30 2020 04:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46512 * 2 1 4 4 C 1.50700 * 109.47258 * 119.99314 * 2 1 3 5 5 O 1.20822 * 119.99763 * 119.99871 * 4 2 1 6 6 O 1.34231 * 120.00245 * 300.00466 * 4 2 1 7 7 C 1.50690 * 109.47357 * 239.99579 * 2 1 3 8 8 O 1.21284 * 120.00155 * 253.07132 * 7 2 1 9 9 N 1.34779 * 120.00156 * 73.07203 * 7 2 1 10 10 C 1.46501 * 119.99768 * 4.98842 * 9 7 2 11 11 C 1.50701 * 109.47142 * 85.77829 * 10 9 7 12 12 H 1.07995 * 119.99719 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99772 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00209 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99621 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47493 * 59.99639 * 15 13 11 17 17 H 1.48500 * 109.47033 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47202 * 299.99554 * 15 13 11 19 19 C 1.46495 * 120.00234 * 184.99020 * 9 7 2 20 20 C 1.52992 * 117.50022 * 16.26861 * 19 9 7 21 21 C 1.53000 * 117.49885 * 307.60773 * 19 9 7 22 22 H 1.08997 * 109.47046 * 55.13829 * 1 2 3 23 23 H 1.09004 * 109.46789 * 175.13646 * 1 2 3 24 24 H 1.09003 * 109.47067 * 295.13396 * 1 2 3 25 25 H 0.96698 * 117.00459 * 179.97438 * 6 4 2 26 26 H 1.08995 * 109.47364 * 205.77659 * 10 9 7 27 27 H 1.08999 * 109.47374 * 325.77652 * 10 9 7 28 28 H 0.96997 * 119.99808 * 180.02562 * 14 13 11 29 29 H 1.09004 * 115.55158 * 161.94005 * 19 9 7 30 30 H 1.08998 * 117.50089 * 0.02562 * 20 19 9 31 31 H 1.09012 * 117.50177 * 145.01993 * 20 19 9 32 32 H 1.09000 * 117.50287 * 214.97937 * 21 19 9 33 33 H 1.08998 * 117.50020 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7270 -1.6926 1.1197 6 8 1.7081 -0.2516 2.4497 7 6 2.0324 -0.7104 -1.2303 8 8 2.5229 -1.8155 -1.1347 9 7 1.9366 -0.1178 -2.4370 10 6 1.4457 1.2586 -2.5402 11 6 2.5914 2.2169 -2.3398 12 1 3.5856 1.8385 -2.1538 13 6 2.3700 3.5768 -2.3930 14 7 1.1592 4.0376 -2.6190 15 14 3.7902 4.7646 -2.1453 16 1 4.8211 4.5279 -3.1876 17 1 3.2926 6.1598 -2.2498 18 1 4.3862 4.5504 -0.8021 19 6 2.3234 -0.8501 -3.6455 20 6 2.4597 -2.3701 -3.5372 21 6 3.7100 -1.4965 -3.6664 22 1 -0.3633 0.5874 -0.8432 23 1 -0.3633 -1.0240 -0.0871 24 1 -0.3633 0.4365 0.9304 25 1 2.0535 -0.7407 3.2090 26 1 1.0090 1.4157 -3.5264 27 1 0.6885 1.4326 -1.7757 28 1 1.0035 4.9942 -2.6568 29 1 1.9431 -0.4444 -4.5830 30 1 2.2612 -2.8254 -2.5670 31 1 2.1694 -2.9645 -4.4037 32 1 4.2418 -1.5164 -4.6177 33 1 4.3346 -1.3766 -2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165461041.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:39 Heat of formation + Delta-G solvation = -87.895032 kcal Electronic energy + Delta-G solvation = -18137.342000 eV Core-core repulsion = 15164.757571 eV Total energy + Delta-G solvation = -2972.584429 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43716 -39.09603 -36.08061 -35.35798 -34.60383 -32.71675 -31.75876 -27.13041 -25.13848 -23.39832 -22.72410 -21.79257 -21.04585 -18.21272 -17.64166 -16.78667 -16.38315 -15.97372 -15.40284 -14.88878 -14.50089 -14.25678 -14.07473 -13.36414 -12.93145 -12.48047 -12.36117 -12.04435 -11.93840 -11.45243 -11.32551 -11.15367 -11.06464 -10.86601 -10.65695 -10.50445 -10.27689 -9.96885 -9.70188 -9.60915 -8.67506 -8.52095 -7.53693 -6.23975 -4.31968 2.61552 3.03515 3.21935 3.26890 3.29196 3.32372 3.94945 4.29020 4.55802 4.92195 5.09048 5.32793 5.41786 5.49472 5.55693 5.67383 5.84454 5.96245 6.11471 6.20041 6.23764 6.33452 6.56213 6.77487 6.79135 6.93136 7.12024 7.57719 7.72000 7.98725 8.22554 8.27002 8.73671 8.96343 9.36391 10.81991 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.010087 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.868386 B = 2775.087134 C = 3644.297963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 H 0.146 0.854 4 C 0.483 3.517 5 O -0.479 6.479 6 O -0.520 6.520 7 C 0.523 3.477 8 O -0.527 6.527 9 N -0.566 5.566 10 C 0.230 3.770 11 C -0.543 4.543 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.890 5.890 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.090 3.910 20 C -0.204 4.204 21 C -0.189 4.189 22 H 0.089 0.911 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.404 0.596 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.267 0.733 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 -5.533 3.610 6.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.164 0.836 4 C 0.322 3.678 5 O -0.364 6.364 6 O -0.332 6.332 7 C 0.310 3.690 8 O -0.405 6.405 9 N -0.295 5.295 10 C 0.111 3.889 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.528 5.528 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.015 4.015 20 C -0.241 4.241 21 C -0.227 4.227 22 H 0.107 0.893 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.262 0.738 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.828 -5.971 3.242 7.036 hybrid contribution 1.093 0.735 0.484 1.403 sum -0.735 -5.237 3.726 6.469 Atomic orbital electron populations 1.21779 0.90264 1.02871 1.04718 1.20970 0.99603 1.03244 0.88785 0.83637 1.22947 0.77847 0.82712 0.84258 1.90804 1.34171 1.24838 1.86565 1.84535 1.72771 1.59194 1.16661 1.19661 0.79395 0.85774 0.84190 1.90574 1.44716 1.20011 1.85227 1.47538 1.62777 1.15714 1.03493 1.19675 0.95319 0.74753 0.99160 1.21482 0.95196 0.90847 1.50579 0.92072 1.24923 0.95905 0.98173 0.94614 1.69895 1.20171 1.14405 1.48290 0.86573 0.82309 0.79721 0.79028 1.20085 1.21069 1.20038 1.21505 0.99277 0.91548 0.89199 1.23843 1.01993 0.93330 1.04935 1.23127 0.91824 1.05380 1.02397 0.89272 0.92370 0.90576 0.73806 0.94265 0.93416 0.92349 0.85848 0.84740 0.90167 0.89453 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.88 37.16 0.33 -1.80 16 2 C -0.10 -1.91 2.33 -92.93 -0.22 -2.13 16 3 H 0.15 2.82 6.98 -51.93 -0.36 2.46 16 4 C 0.48 8.58 7.61 36.01 0.27 8.86 16 5 O -0.48 -10.13 15.04 -26.79 -0.40 -10.54 16 6 O -0.52 -7.09 13.23 -39.26 -0.52 -7.61 16 7 C 0.52 10.98 6.64 -10.99 -0.07 10.90 16 8 O -0.53 -12.05 10.09 -18.77 -0.19 -12.24 16 9 N -0.57 -11.81 2.83 -167.48 -0.47 -12.28 16 10 C 0.23 5.21 4.82 -5.19 -0.03 5.18 16 11 C -0.54 -13.72 8.79 -34.44 -0.30 -14.02 16 12 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -23.52 13.29 55.43 0.74 -22.79 16 15 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.09 1.71 6.61 -67.94 -0.45 1.26 16 20 C -0.20 -3.60 9.63 -26.70 -0.26 -3.85 16 21 C -0.19 -3.46 9.88 -26.69 -0.26 -3.72 16 22 H 0.09 1.42 5.84 -51.93 -0.30 1.11 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 1.02 8.00 -51.93 -0.42 0.60 16 25 H 0.40 3.57 9.10 45.56 0.41 3.99 16 26 H 0.04 0.93 7.97 -51.93 -0.41 0.52 16 27 H 0.05 1.06 4.51 -51.93 -0.23 0.83 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.12 2.15 8.05 -51.93 -0.42 1.73 16 30 H 0.14 2.71 5.18 -52.26 -0.27 2.44 16 31 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.09 1.94 7.64 -51.93 -0.40 1.54 16 LS Contribution 279.80 15.07 4.22 4.22 Total: -1.00 -30.38 279.80 -5.95 -36.33 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -3.21 Total: 7.42 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.08 Total: 2.30 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.26 Total: -35.07 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.11 Total: -30.38 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.38 -5.95 -36.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165461041.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.568 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds