Wall clock time and date at job start Mon Mar 30 2020 04:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46512 * 2 1 4 4 C 1.50700 * 109.47258 * 119.99314 * 2 1 3 5 5 O 1.20822 * 119.99763 * 119.99871 * 4 2 1 6 6 O 1.34231 * 120.00245 * 300.00466 * 4 2 1 7 7 C 1.50690 * 109.47357 * 239.99579 * 2 1 3 8 8 O 1.21284 * 120.00155 * 253.07132 * 7 2 1 9 9 N 1.34779 * 120.00156 * 73.07203 * 7 2 1 10 10 C 1.46501 * 119.99768 * 4.98842 * 9 7 2 11 11 C 1.50701 * 109.47142 * 85.77829 * 10 9 7 12 12 H 1.07995 * 119.99719 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99772 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00209 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99621 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47493 * 59.99639 * 15 13 11 17 17 H 1.48500 * 109.47033 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47202 * 299.99554 * 15 13 11 19 19 C 1.46495 * 120.00234 * 184.99020 * 9 7 2 20 20 C 1.52992 * 117.50022 * 16.26861 * 19 9 7 21 21 C 1.53000 * 117.49885 * 307.60773 * 19 9 7 22 22 H 1.08997 * 109.47046 * 55.13829 * 1 2 3 23 23 H 1.09004 * 109.46789 * 175.13646 * 1 2 3 24 24 H 1.09003 * 109.47067 * 295.13396 * 1 2 3 25 25 H 0.96698 * 117.00459 * 179.97438 * 6 4 2 26 26 H 1.08995 * 109.47364 * 205.77659 * 10 9 7 27 27 H 1.08999 * 109.47374 * 325.77652 * 10 9 7 28 28 H 0.96997 * 119.99808 * 180.02562 * 14 13 11 29 29 H 1.09004 * 115.55158 * 161.94005 * 19 9 7 30 30 H 1.08998 * 117.50089 * 0.02562 * 20 19 9 31 31 H 1.09012 * 117.50177 * 145.01993 * 20 19 9 32 32 H 1.09000 * 117.50287 * 214.97937 * 21 19 9 33 33 H 1.08998 * 117.50020 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7270 -1.6926 1.1197 6 8 1.7081 -0.2516 2.4497 7 6 2.0324 -0.7104 -1.2303 8 8 2.5229 -1.8155 -1.1347 9 7 1.9366 -0.1178 -2.4370 10 6 1.4457 1.2586 -2.5402 11 6 2.5914 2.2169 -2.3398 12 1 3.5856 1.8385 -2.1538 13 6 2.3700 3.5768 -2.3930 14 7 1.1592 4.0376 -2.6190 15 14 3.7902 4.7646 -2.1453 16 1 4.8211 4.5279 -3.1876 17 1 3.2926 6.1598 -2.2498 18 1 4.3862 4.5504 -0.8021 19 6 2.3234 -0.8501 -3.6455 20 6 2.4597 -2.3701 -3.5372 21 6 3.7100 -1.4965 -3.6664 22 1 -0.3633 0.5874 -0.8432 23 1 -0.3633 -1.0240 -0.0871 24 1 -0.3633 0.4365 0.9304 25 1 2.0535 -0.7407 3.2090 26 1 1.0090 1.4157 -3.5264 27 1 0.6885 1.4326 -1.7757 28 1 1.0035 4.9942 -2.6568 29 1 1.9431 -0.4444 -4.5830 30 1 2.2612 -2.8254 -2.5670 31 1 2.1694 -2.9645 -4.4037 32 1 4.2418 -1.5164 -4.6177 33 1 4.3346 -1.3766 -2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165461041.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:38 Heat of formation + Delta-G solvation = -106.985294 kcal Electronic energy + Delta-G solvation = -18138.169816 eV Core-core repulsion = 15164.757571 eV Total energy + Delta-G solvation = -2973.412245 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.93717 -40.57374 -37.51576 -36.79567 -36.28654 -34.48229 -33.34482 -29.00111 -26.51279 -24.99923 -24.45713 -23.23535 -22.46240 -19.77482 -19.01671 -18.67931 -17.82367 -17.66241 -16.83243 -16.44022 -16.27019 -15.78171 -15.57377 -14.76099 -14.57802 -14.12131 -13.93494 -13.61857 -13.37780 -12.99847 -12.91384 -12.77540 -12.51393 -12.44434 -12.35978 -12.12504 -12.00149 -11.47664 -11.35874 -11.19181 -10.59051 -10.16413 -9.20452 -8.19027 -6.33300 1.21056 1.42593 1.44266 1.49850 1.57377 1.81964 2.37618 2.51520 3.07526 3.11341 3.41341 3.95971 4.00515 4.11394 4.13732 4.23098 4.48080 4.71046 4.72779 4.80319 4.84247 4.94235 5.05956 5.15162 5.35894 5.42973 5.61388 5.69652 5.97412 6.07711 6.51060 6.80403 7.02910 7.29840 7.40909 8.84947 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.010087 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.868386 B = 2775.087134 C = 3644.297963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 H 0.135 0.865 4 C 0.493 3.507 5 O -0.519 6.519 6 O -0.503 6.503 7 C 0.515 3.485 8 O -0.548 6.548 9 N -0.569 5.569 10 C 0.242 3.758 11 C -0.551 4.551 12 H 0.044 0.956 13 C 0.031 3.969 14 N -0.911 5.911 15 Si 0.948 3.052 16 H -0.277 1.277 17 H -0.278 1.278 18 H -0.273 1.273 19 C 0.068 3.932 20 C -0.186 4.186 21 C -0.189 4.189 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.099 0.901 25 H 0.428 0.572 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.269 0.731 29 H 0.140 0.860 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -5.323 3.799 6.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 H 0.152 0.848 4 C 0.334 3.666 5 O -0.406 6.406 6 O -0.317 6.317 7 C 0.302 3.698 8 O -0.428 6.428 9 N -0.298 5.298 10 C 0.122 3.878 11 C -0.590 4.590 12 H 0.063 0.937 13 C -0.171 4.171 14 N -0.550 5.550 15 Si 0.774 3.226 16 H -0.203 1.203 17 H -0.203 1.203 18 H -0.199 1.199 19 C -0.036 4.036 20 C -0.223 4.223 21 C -0.228 4.228 22 H 0.100 0.900 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.290 0.710 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.111 -5.757 3.459 7.040 hybrid contribution 1.180 0.650 0.471 1.427 sum -0.931 -5.107 3.930 6.511 Atomic orbital electron populations 1.21755 0.87893 1.03432 1.05647 1.20968 1.01544 1.02055 0.88299 0.84785 1.22738 0.76892 0.81824 0.85146 1.90797 1.35961 1.26581 1.87286 1.84465 1.72123 1.58914 1.16197 1.20114 0.79055 0.85694 0.84891 1.90580 1.45597 1.20979 1.85657 1.47540 1.62698 1.15201 1.04353 1.19426 0.94571 0.75244 0.98536 1.21613 0.95149 0.91674 1.50559 0.93725 1.25497 0.97768 0.99375 0.94433 1.69957 1.21358 1.14797 1.48884 0.85764 0.79849 0.78265 0.78753 1.20292 1.20337 1.19851 1.21847 1.00038 0.92532 0.89214 1.23755 1.00968 0.92538 1.05078 1.23123 0.91569 1.05655 1.02442 0.89964 0.91659 0.88217 0.70998 0.95392 0.92847 0.92136 0.84256 0.87154 0.86742 0.86630 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.88 71.98 0.64 -3.17 16 2 C -0.11 -3.87 2.33 -12.29 -0.03 -3.90 16 3 H 0.13 5.19 6.98 -2.39 -0.02 5.17 16 4 C 0.49 17.08 7.61 71.24 0.54 17.63 16 5 O -0.52 -21.87 15.04 29.67 0.45 -21.42 16 6 O -0.50 -12.58 13.23 -51.42 -0.68 -13.26 16 7 C 0.51 21.73 6.64 87.65 0.58 22.31 16 8 O -0.55 -25.43 10.09 20.22 0.20 -25.22 16 9 N -0.57 -23.78 2.83 -802.17 -2.27 -26.06 16 10 C 0.24 10.96 4.82 85.63 0.41 11.37 16 11 C -0.55 -27.91 8.79 25.60 0.23 -27.68 16 12 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 13 C 0.03 1.55 5.46 84.66 0.46 2.02 16 14 N -0.91 -47.60 13.29 21.45 0.28 -47.32 16 15 Si 0.95 40.91 29.54 68.60 2.03 42.93 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 C 0.07 2.54 6.61 44.99 0.30 2.84 16 20 C -0.19 -6.36 9.63 30.62 0.29 -6.06 16 21 C -0.19 -6.81 9.88 30.62 0.30 -6.51 16 22 H 0.08 2.53 5.84 -2.39 -0.01 2.52 16 23 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.10 2.43 8.00 -2.39 -0.02 2.41 16 25 H 0.43 6.44 9.10 -74.06 -0.67 5.76 16 26 H 0.03 1.33 7.97 -2.39 -0.02 1.31 16 27 H 0.05 2.36 4.51 -2.39 -0.01 2.35 16 28 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 29 H 0.14 4.67 8.05 -2.39 -0.02 4.65 16 30 H 0.11 4.44 5.18 -7.61 -0.04 4.40 16 31 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 32 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.06 2.65 7.64 -2.39 -0.02 2.63 16 Total: -1.00 -64.36 279.80 4.18 -60.18 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.44 Total: 21.32 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 3.73 Total: 8.84 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.99 Total: -73.37 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -0.03 Total: -59.90 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -64.36 4.18 -60.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165461041.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.805 kcal (2) G-P(sol) polarization free energy of solvation -64.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds