Wall clock time and date at job start Mon Mar 30 2020 03:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00438 * 2 1 4 4 H 1.48503 * 109.47435 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00559 * 3 2 1 6 6 H 1.48502 * 109.47110 * 60.00234 * 3 2 1 7 7 C 1.37883 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99375 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00177 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47280 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99919 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00136 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99763 * 180.02562 * 11 10 9 14 14 H 1.09000 * 110.01812 * 28.80877 * 13 11 10 15 15 C 1.54263 * 110.03329 * 150.25219 * 13 11 10 16 16 C 1.54882 * 104.19790 * 142.89326 * 15 13 11 17 17 C 1.54890 * 102.74919 * 322.05767 * 16 15 13 18 18 C 1.53879 * 110.03178 * 267.41827 * 13 11 10 19 19 H 1.08999 * 110.03095 * 121.38093 * 18 13 11 20 20 C 1.50698 * 110.03115 * 0.02562 * 18 13 11 21 21 O 1.20830 * 119.99468 * 272.51717 * 20 18 13 22 22 O 1.34229 * 120.00289 * 92.24651 * 20 18 13 23 23 H 0.97003 * 119.99825 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47501 * 59.99717 * 9 7 2 25 25 H 1.09002 * 109.47062 * 300.00275 * 9 7 2 26 26 H 0.97000 * 119.99684 * 359.97438 * 10 9 7 27 27 H 1.08992 * 110.48928 * 261.57724 * 15 13 11 28 28 H 1.09006 * 110.48149 * 24.08401 * 15 13 11 29 29 H 1.09001 * 110.75430 * 80.37287 * 16 15 13 30 30 H 1.08996 * 110.75941 * 203.74819 * 16 15 13 31 31 H 1.08996 * 110.49170 * 279.26315 * 17 16 15 32 32 H 1.08999 * 110.48839 * 156.61552 * 17 16 15 33 33 H 0.96698 * 116.99565 * 180.27642 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6128 -0.0015 11 6 1.7535 -4.8834 -0.0019 12 8 0.5611 -5.1050 -0.0019 13 6 2.7328 -6.0289 -0.0010 14 1 3.6569 -5.7294 0.4933 15 6 2.1191 -7.2483 0.7176 16 6 2.6289 -8.4643 -0.0950 17 6 2.5818 -7.9449 -1.5534 18 6 3.0270 -6.4719 -1.4450 19 1 4.0939 -6.3873 -1.6514 20 6 2.2457 -5.6232 -2.4147 21 8 1.1202 -5.9378 -2.7219 22 8 2.7979 -4.5149 -2.9327 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5564 -0.8919 25 1 0.6239 -2.5575 0.8880 26 1 3.1565 -3.4355 -0.0010 27 1 2.4726 -7.3021 1.7471 28 1 1.0305 -7.1985 0.6911 29 1 3.6492 -8.7198 0.1913 30 1 1.9652 -9.3195 0.0320 31 1 1.5681 -8.0089 -1.9487 32 1 3.2732 -8.5071 -2.1811 33 1 2.2564 -4.0007 -3.5471 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168636749.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:46 Heat of formation + Delta-G solvation = -148.245516 kcal Electronic energy + Delta-G solvation = -17913.416536 eV Core-core repulsion = 14938.215113 eV Total energy + Delta-G solvation = -2975.201423 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72285 -38.72583 -36.88130 -35.64031 -34.16801 -32.34159 -29.82365 -29.29002 -27.00421 -23.54100 -22.66515 -20.88801 -20.41932 -19.13349 -18.03534 -17.26265 -16.35053 -16.03494 -15.37949 -15.12233 -14.85543 -14.51496 -13.84067 -13.79753 -13.05476 -12.91343 -12.10574 -12.01969 -11.90223 -11.50917 -11.30372 -11.15306 -11.06827 -10.97840 -10.90318 -10.84488 -10.63332 -10.32142 -10.18662 -9.38361 -9.00592 -8.74306 -7.88184 -6.17102 -4.24024 2.46563 3.16970 3.22794 3.26929 3.30070 3.33208 4.04601 4.34341 4.37746 4.62320 4.93718 5.18969 5.27187 5.30941 5.38147 5.41163 5.53969 5.59261 5.62173 5.83510 5.98205 6.08690 6.19213 6.44022 6.83755 7.29815 7.43102 7.50428 7.66377 7.96246 8.19017 8.61489 8.77335 9.08537 9.42638 10.93145 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037709 B = 0.006250 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.354946 B = 4478.788734 C = 4692.372351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.487 3.513 12 O -0.538 6.538 13 C -0.103 4.103 14 H 0.100 0.900 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.070 4.070 19 H 0.108 0.892 20 C 0.474 3.526 21 O -0.496 6.496 22 O -0.511 6.511 23 H 0.265 0.735 24 H 0.024 0.976 25 H 0.026 0.974 26 H 0.391 0.609 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.809 -13.367 -2.106 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.354 5.354 11 C 0.270 3.730 12 O -0.416 6.416 13 C -0.125 4.125 14 H 0.118 0.882 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.090 4.090 19 H 0.126 0.874 20 C 0.314 3.686 21 O -0.383 6.383 22 O -0.323 6.323 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.224 0.776 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 8.690 -13.668 -1.922 16.310 hybrid contribution 0.549 1.587 -0.421 1.731 sum 9.239 -12.081 -2.342 15.388 Atomic orbital electron populations 1.69992 1.06136 1.27181 1.49020 1.24964 0.94895 0.99478 0.94744 0.86361 0.79841 0.82960 0.77742 1.19603 1.20821 1.20816 1.21253 0.93292 0.90350 1.52994 0.91799 1.19084 0.88270 0.82045 0.97570 1.46488 1.11142 1.05950 1.71785 1.20351 0.89568 0.84494 0.78580 1.90693 1.16448 1.84545 1.49870 1.21960 0.99944 0.96285 0.94331 0.88207 1.22387 1.02921 0.91539 0.98257 1.22454 1.01242 0.97862 0.94067 1.22468 1.03451 0.91355 0.98078 1.21557 1.00801 0.94778 0.91862 0.87385 1.23191 0.85828 0.79747 0.79790 1.90722 1.19145 1.70676 1.57728 1.84486 1.50552 1.37278 1.59949 0.92512 0.95799 0.95645 0.77596 0.90957 0.89087 0.91203 0.90778 0.89235 0.90805 0.72972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.71 -14.98 5.55 -61.47 -0.34 -15.32 16 11 C 0.49 9.89 4.92 -10.98 -0.05 9.84 16 12 O -0.54 -13.40 15.21 3.20 0.05 -13.35 16 13 C -0.10 -1.48 3.29 -90.65 -0.30 -1.78 16 14 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.11 -1.47 6.31 -25.08 -0.16 -1.63 16 16 C -0.12 -1.18 6.91 -24.74 -0.17 -1.35 16 17 C -0.12 -1.32 6.31 -25.07 -0.16 -1.48 16 18 C -0.07 -0.91 3.40 -90.65 -0.31 -1.22 16 19 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 20 C 0.47 7.92 5.42 36.00 0.20 8.12 16 21 O -0.50 -10.12 15.97 -21.18 -0.34 -10.46 16 22 O -0.51 -7.76 13.42 -39.25 -0.53 -8.29 16 23 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.39 7.20 8.32 -40.82 -0.34 6.86 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.47 6.87 -51.93 -0.36 1.11 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.25 6.87 -51.93 -0.36 0.90 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.41 5.29 9.10 45.56 0.41 5.70 16 LS Contribution 283.23 15.07 4.27 4.27 Total: -1.00 -34.89 283.23 -6.13 -41.02 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -3.55 Total: 8.00 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.40 Total: 3.85 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.40 Total: -40.87 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.82 Total: -32.09 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.89 -6.13 -41.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168636749.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.228 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds