Wall clock time and date at job start Mon Mar 30 2020 03:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00438 * 2 1 4 4 H 1.48503 * 109.47435 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00559 * 3 2 1 6 6 H 1.48502 * 109.47110 * 60.00234 * 3 2 1 7 7 C 1.37883 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99375 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00177 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47280 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99919 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00136 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99763 * 180.02562 * 11 10 9 14 14 H 1.09000 * 110.01812 * 28.80877 * 13 11 10 15 15 C 1.54263 * 110.03329 * 150.25219 * 13 11 10 16 16 C 1.54882 * 104.19790 * 142.89326 * 15 13 11 17 17 C 1.54890 * 102.74919 * 322.05767 * 16 15 13 18 18 C 1.53879 * 110.03178 * 267.41827 * 13 11 10 19 19 H 1.08999 * 110.03095 * 121.38093 * 18 13 11 20 20 C 1.50698 * 110.03115 * 0.02562 * 18 13 11 21 21 O 1.20830 * 119.99468 * 272.51717 * 20 18 13 22 22 O 1.34229 * 120.00289 * 92.24651 * 20 18 13 23 23 H 0.97003 * 119.99825 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47501 * 59.99717 * 9 7 2 25 25 H 1.09002 * 109.47062 * 300.00275 * 9 7 2 26 26 H 0.97000 * 119.99684 * 359.97438 * 10 9 7 27 27 H 1.08992 * 110.48928 * 261.57724 * 15 13 11 28 28 H 1.09006 * 110.48149 * 24.08401 * 15 13 11 29 29 H 1.09001 * 110.75430 * 80.37287 * 16 15 13 30 30 H 1.08996 * 110.75941 * 203.74819 * 16 15 13 31 31 H 1.08996 * 110.49170 * 279.26315 * 17 16 15 32 32 H 1.08999 * 110.48839 * 156.61552 * 17 16 15 33 33 H 0.96698 * 116.99565 * 180.27642 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6128 -0.0015 11 6 1.7535 -4.8834 -0.0019 12 8 0.5611 -5.1050 -0.0019 13 6 2.7328 -6.0289 -0.0010 14 1 3.6569 -5.7294 0.4933 15 6 2.1191 -7.2483 0.7176 16 6 2.6289 -8.4643 -0.0950 17 6 2.5818 -7.9449 -1.5534 18 6 3.0270 -6.4719 -1.4450 19 1 4.0939 -6.3873 -1.6514 20 6 2.2457 -5.6232 -2.4147 21 8 1.1202 -5.9378 -2.7219 22 8 2.7979 -4.5149 -2.9327 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5564 -0.8919 25 1 0.6239 -2.5575 0.8880 26 1 3.1565 -3.4355 -0.0010 27 1 2.4726 -7.3021 1.7471 28 1 1.0305 -7.1985 0.6911 29 1 3.6492 -8.7198 0.1913 30 1 1.9652 -9.3195 0.0320 31 1 1.5681 -8.0089 -1.9487 32 1 3.2732 -8.5071 -2.1811 33 1 2.2564 -4.0007 -3.5471 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168636749.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:46 Heat of formation + Delta-G solvation = -175.706830 kcal Electronic energy + Delta-G solvation = -17914.607348 eV Core-core repulsion = 14938.215113 eV Total energy + Delta-G solvation = -2976.392235 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.05138 -40.27389 -38.12087 -36.98419 -36.15014 -34.37959 -31.02509 -30.42824 -28.89184 -25.17052 -24.21618 -22.34040 -21.51358 -20.59935 -19.42736 -18.77124 -18.00924 -17.45774 -17.01068 -16.81125 -16.14442 -15.88805 -15.60203 -15.20432 -14.58353 -14.13524 -14.03961 -13.96347 -13.18856 -12.88952 -12.79232 -12.61239 -12.48371 -12.27523 -12.23291 -11.99533 -11.91153 -11.64428 -11.47043 -11.40544 -10.83646 -10.71859 -9.86580 -8.30917 -6.47993 1.15688 1.42527 1.43676 1.57550 1.63385 2.02743 2.32416 2.58712 3.04170 3.36252 3.56786 3.84675 4.17427 4.33050 4.37736 4.44519 4.46270 4.49634 4.75302 5.01885 5.04995 5.15853 5.18655 5.20865 5.22975 5.45238 5.50653 5.62221 5.67442 5.82193 6.63553 6.85831 6.92991 7.21603 7.45705 8.81732 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037709 B = 0.006250 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.354946 B = 4478.788734 C = 4692.372351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.087 0.913 9 C 0.271 3.729 10 N -0.698 5.698 11 C 0.481 3.519 12 O -0.592 6.592 13 C -0.095 4.095 14 H 0.145 0.855 15 C -0.118 4.118 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.068 4.068 19 H 0.156 0.844 20 C 0.465 3.535 21 O -0.546 6.546 22 O -0.508 6.508 23 H 0.268 0.732 24 H -0.021 1.021 25 H -0.018 1.018 26 H 0.409 0.591 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.865 -13.936 -1.730 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.173 1.173 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.588 4.588 8 H 0.105 0.895 9 C 0.148 3.852 10 N -0.348 5.348 11 C 0.268 3.732 12 O -0.473 6.473 13 C -0.116 4.116 14 H 0.163 0.837 15 C -0.156 4.156 16 C -0.142 4.142 17 C -0.154 4.154 18 C -0.087 4.087 19 H 0.174 0.826 20 C 0.308 3.692 21 O -0.436 6.436 22 O -0.320 6.320 23 H 0.077 0.923 24 H -0.003 1.003 25 H 0.000 1.000 26 H 0.245 0.755 27 H 0.114 0.886 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 12.812 -14.259 -1.547 19.232 hybrid contribution -0.791 1.736 -0.555 1.987 sum 12.021 -12.523 -2.101 17.486 Atomic orbital electron populations 1.70165 1.08461 1.28500 1.50182 1.26112 0.95726 1.04075 0.93840 0.85078 0.79198 0.77118 0.77613 1.17309 1.20542 1.20541 1.21622 0.94325 0.90267 1.52571 0.89537 1.18468 0.88628 0.84675 0.93464 1.46218 1.11116 1.05315 1.72149 1.21542 0.90060 0.85349 0.76297 1.90674 1.19558 1.85364 1.51739 1.22133 0.99666 0.93692 0.96139 0.83699 1.22445 1.00327 0.92601 1.00261 1.22469 1.03482 0.96314 0.91892 1.22526 1.02260 0.90840 0.99805 1.21893 1.02814 0.94640 0.89396 0.82603 1.24166 0.85574 0.79799 0.79651 1.90709 1.21474 1.71833 1.59545 1.84477 1.50516 1.37042 1.59948 0.92308 1.00348 0.99995 0.75452 0.88555 0.93523 0.87207 0.90107 0.92964 0.87208 0.72300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.99 42.34 29.54 68.60 2.03 44.36 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -29.99 9.28 25.60 0.24 -29.75 16 8 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 9 C 0.27 15.18 5.43 85.63 0.46 15.65 16 10 N -0.70 -29.87 5.55 -466.78 -2.59 -32.46 16 11 C 0.48 19.80 4.92 87.66 0.43 20.24 16 12 O -0.59 -31.33 15.21 -0.78 -0.01 -31.34 16 13 C -0.09 -2.48 3.29 -10.81 -0.04 -2.51 16 14 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 15 C -0.12 -2.84 6.31 31.67 0.20 -2.64 16 16 C -0.10 -1.67 6.91 31.88 0.22 -1.45 16 17 C -0.12 -2.34 6.31 31.67 0.20 -2.14 16 18 C -0.07 -1.57 3.40 -10.82 -0.04 -1.61 16 19 H 0.16 2.18 8.14 -2.39 -0.02 2.16 16 20 C 0.46 15.43 5.42 71.24 0.39 15.81 16 21 O -0.55 -23.32 15.97 24.27 0.39 -22.94 16 22 O -0.51 -15.14 13.42 -51.40 -0.69 -15.83 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 25 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 26 H 0.41 14.33 8.32 -92.71 -0.77 13.56 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.55 6.87 -2.38 -0.02 1.53 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.46 6.87 -2.39 -0.02 1.44 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.42 11.04 9.10 -74.06 -0.67 10.36 16 Total: -1.00 -82.83 283.23 1.63 -81.20 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.31 Total: 21.83 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 2.53 Total: 12.16 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -2.30 Total: -89.45 kcal Atomic # 8 Polarization: -69.79 SS G_CDS: -0.31 Total: -70.10 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -82.83 1.63 -81.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168636749.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.506 kcal (2) G-P(sol) polarization free energy of solvation -82.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds