Wall clock time and date at job start Mon Mar 30 2020 03:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48508 * 109.46856 * 270.00094 * 3 2 1 5 5 H 1.48495 * 109.46854 * 30.00020 * 3 2 1 6 6 H 1.48501 * 109.47279 * 150.00479 * 3 2 1 7 7 C 1.37879 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99824 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99785 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.99712 * 180.02562 * 11 10 9 14 14 H 1.08999 * 110.01765 * 301.39047 * 13 11 10 15 15 C 1.53873 * 110.07354 * 62.81480 * 13 11 10 16 16 C 1.54264 * 106.60152 * 119.30398 * 15 13 11 17 17 C 1.54897 * 104.19493 * 23.60884 * 16 15 13 18 18 C 1.54268 * 110.02899 * 180.02562 * 13 11 10 19 19 H 1.08999 * 110.48827 * 335.73368 * 18 13 11 20 20 C 1.50702 * 110.48798 * 98.37894 * 18 13 11 21 21 O 1.20823 * 119.99908 * 356.22858 * 20 18 13 22 22 O 1.34224 * 120.00220 * 176.22740 * 20 18 13 23 23 H 0.96999 * 119.99783 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47058 * 60.00186 * 9 7 2 25 25 H 1.09001 * 109.46990 * 299.99968 * 9 7 2 26 26 H 0.96998 * 120.00282 * 0.02562 * 10 9 7 27 27 H 1.09001 * 110.03473 * 0.02562 * 15 13 11 28 28 H 1.09005 * 110.03108 * 238.58372 * 15 13 11 29 29 H 1.08998 * 110.49036 * 264.93341 * 16 15 13 30 30 H 1.09000 * 110.49063 * 142.28381 * 16 15 13 31 31 H 1.09000 * 110.75568 * 80.37108 * 17 16 15 32 32 H 1.09002 * 110.75327 * 203.73969 * 17 16 15 33 33 H 0.96702 * 116.99943 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5614 -5.1050 -0.0006 13 6 2.7330 -6.0288 -0.0022 14 1 3.3803 -5.9657 -0.8769 15 6 3.5790 -6.0011 1.2829 16 6 3.3054 -7.3287 2.0194 17 6 2.8322 -8.2921 0.9025 18 6 1.9748 -7.3723 -0.0023 19 1 0.9768 -7.2471 0.4177 20 6 1.8942 -7.9323 -1.3990 21 8 2.3295 -7.2977 -2.3304 22 8 1.3387 -9.1362 -1.6084 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0021 27 1 3.2812 -5.1593 1.9079 28 1 4.6370 -5.9247 1.0318 29 1 2.5224 -7.1965 2.7660 30 1 4.2178 -7.7023 2.4841 31 1 3.6832 -8.6916 0.3509 32 1 2.2273 -9.0980 1.3183 33 1 1.3101 -9.4536 -2.5214 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168636969.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:50 Heat of formation + Delta-G solvation = -152.703410 kcal Electronic energy + Delta-G solvation = -17369.185132 eV Core-core repulsion = 14393.790400 eV Total energy + Delta-G solvation = -2975.394731 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.69346 -39.06447 -36.85253 -36.03407 -34.19916 -32.34884 -29.64860 -29.51190 -26.91586 -23.72085 -22.61292 -21.04723 -20.46038 -19.08489 -18.20173 -17.30883 -16.85685 -15.92624 -15.41413 -15.26143 -14.73686 -14.53796 -14.01142 -13.68696 -13.25136 -13.02701 -12.22094 -12.04574 -11.89187 -11.71496 -11.45416 -11.30064 -11.21258 -10.96598 -10.89523 -10.86153 -10.70094 -10.35714 -10.27676 -9.38605 -9.01063 -8.72597 -7.87541 -6.15553 -4.22385 2.26408 3.00913 3.25331 3.31227 3.33631 3.37942 4.04014 4.27203 4.35993 4.55260 4.85994 5.20556 5.21644 5.29081 5.38524 5.43164 5.48652 5.58691 5.66737 5.80946 5.92399 6.04371 6.17286 6.22746 6.50085 7.31544 7.44413 7.53029 7.67430 7.91410 7.98132 8.63267 8.78259 9.09661 9.44147 10.94751 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037411 B = 0.005238 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.262012 B = 5344.268704 C = 5672.707127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.708 5.708 11 C 0.508 3.492 12 O -0.559 6.559 13 C -0.108 4.108 14 H 0.111 0.889 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.109 4.109 18 C -0.075 4.075 19 H 0.133 0.867 20 C 0.490 3.510 21 O -0.513 6.513 22 O -0.516 6.516 23 H 0.266 0.734 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.391 0.609 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.853 -16.477 2.067 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.355 5.355 11 C 0.292 3.708 12 O -0.439 6.439 13 C -0.129 4.129 14 H 0.129 0.871 15 C -0.155 4.155 16 C -0.160 4.160 17 C -0.147 4.147 18 C -0.094 4.094 19 H 0.151 0.849 20 C 0.332 3.668 21 O -0.401 6.401 22 O -0.328 6.328 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.224 0.776 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 6.957 -16.131 2.219 17.707 hybrid contribution 0.764 0.920 -0.809 1.444 sum 7.721 -15.211 1.409 17.116 Atomic orbital electron populations 1.69978 1.06124 1.27285 1.48962 1.24954 0.94910 0.99456 0.94697 0.86409 0.79608 0.82623 0.78237 1.20459 1.21009 1.19729 1.21229 0.93277 0.90441 1.53150 0.91873 1.19122 0.88333 0.81980 0.97740 1.46403 1.11163 1.05996 1.71987 1.20207 0.89102 0.84436 0.77043 1.90628 1.16892 1.84764 1.51597 1.21944 0.97373 0.92285 1.01338 0.87068 1.22163 0.99591 0.98931 0.94776 1.22359 1.01639 0.94470 0.97487 1.22482 0.98835 0.97355 0.96021 1.21796 1.04096 0.94252 0.89242 0.84922 1.23351 0.72910 0.78175 0.92353 1.90715 1.45013 1.59267 1.45072 1.84534 1.75082 1.35731 1.37424 0.92459 0.95569 0.95473 0.77608 0.90308 0.90574 0.90797 0.90833 0.91004 0.90004 0.73515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.71 -15.29 5.44 -61.47 -0.33 -15.63 16 11 C 0.51 10.40 6.91 -10.99 -0.08 10.32 16 12 O -0.56 -13.58 15.40 5.56 0.09 -13.49 16 13 C -0.11 -1.62 2.65 -90.66 -0.24 -1.86 16 14 H 0.11 1.68 6.90 -51.93 -0.36 1.32 16 15 C -0.12 -1.36 6.41 -25.62 -0.16 -1.52 16 16 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 17 C -0.11 -1.07 6.30 -24.72 -0.16 -1.22 16 18 C -0.07 -1.02 2.69 -90.09 -0.24 -1.26 16 19 H 0.13 2.03 6.88 -51.93 -0.36 1.67 16 20 C 0.49 6.98 7.63 36.01 0.27 7.25 16 21 O -0.51 -8.94 16.21 -18.75 -0.30 -9.25 16 22 O -0.52 -5.58 13.40 -39.24 -0.53 -6.11 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.39 7.29 8.32 -40.82 -0.34 6.95 16 27 H 0.08 1.02 7.62 -51.93 -0.40 0.62 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.63 8.05 -51.93 -0.42 0.22 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.41 2.63 9.10 45.56 0.41 3.05 16 LS Contribution 285.83 15.07 4.31 4.31 Total: -1.00 -34.53 285.83 -5.80 -40.33 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.52 Total: 5.95 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -1.22 Total: 3.53 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.40 Total: -41.26 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.74 Total: -28.85 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.53 -5.80 -40.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168636969.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.375 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds