Wall clock time and date at job start Mon Mar 30 2020 03:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48508 * 109.46856 * 270.00094 * 3 2 1 5 5 H 1.48495 * 109.46854 * 30.00020 * 3 2 1 6 6 H 1.48501 * 109.47279 * 150.00479 * 3 2 1 7 7 C 1.37879 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99824 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99785 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.99712 * 180.02562 * 11 10 9 14 14 H 1.08999 * 110.01765 * 301.39047 * 13 11 10 15 15 C 1.53873 * 110.07354 * 62.81480 * 13 11 10 16 16 C 1.54264 * 106.60152 * 119.30398 * 15 13 11 17 17 C 1.54897 * 104.19493 * 23.60884 * 16 15 13 18 18 C 1.54268 * 110.02899 * 180.02562 * 13 11 10 19 19 H 1.08999 * 110.48827 * 335.73368 * 18 13 11 20 20 C 1.50702 * 110.48798 * 98.37894 * 18 13 11 21 21 O 1.20823 * 119.99908 * 356.22858 * 20 18 13 22 22 O 1.34224 * 120.00220 * 176.22740 * 20 18 13 23 23 H 0.96999 * 119.99783 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47058 * 60.00186 * 9 7 2 25 25 H 1.09001 * 109.46990 * 299.99968 * 9 7 2 26 26 H 0.96998 * 120.00282 * 0.02562 * 10 9 7 27 27 H 1.09001 * 110.03473 * 0.02562 * 15 13 11 28 28 H 1.09005 * 110.03108 * 238.58372 * 15 13 11 29 29 H 1.08998 * 110.49036 * 264.93341 * 16 15 13 30 30 H 1.09000 * 110.49063 * 142.28381 * 16 15 13 31 31 H 1.09000 * 110.75568 * 80.37108 * 17 16 15 32 32 H 1.09002 * 110.75327 * 203.73969 * 17 16 15 33 33 H 0.96702 * 116.99943 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5614 -5.1050 -0.0006 13 6 2.7330 -6.0288 -0.0022 14 1 3.3803 -5.9657 -0.8769 15 6 3.5790 -6.0011 1.2829 16 6 3.3054 -7.3287 2.0194 17 6 2.8322 -8.2921 0.9025 18 6 1.9748 -7.3723 -0.0023 19 1 0.9768 -7.2471 0.4177 20 6 1.8942 -7.9323 -1.3990 21 8 2.3295 -7.2977 -2.3304 22 8 1.3387 -9.1362 -1.6084 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0021 27 1 3.2812 -5.1593 1.9079 28 1 4.6370 -5.9247 1.0318 29 1 2.5224 -7.1965 2.7660 30 1 4.2178 -7.7023 2.4841 31 1 3.6832 -8.6916 0.3509 32 1 2.2273 -9.0980 1.3183 33 1 1.3101 -9.4536 -2.5214 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168636969.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:50 Heat of formation + Delta-G solvation = -179.220312 kcal Electronic energy + Delta-G solvation = -17370.334991 eV Core-core repulsion = 14393.790400 eV Total energy + Delta-G solvation = -2976.544591 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88239 -40.52517 -38.05885 -37.09666 -36.19086 -34.39906 -30.88692 -30.59182 -28.79446 -25.15829 -24.26364 -22.28709 -21.60417 -20.56478 -19.41001 -18.72620 -18.19117 -17.55193 -17.02875 -16.68925 -16.33323 -16.02012 -15.31356 -15.08568 -14.59016 -14.19601 -14.05310 -13.92999 -13.28041 -12.98454 -12.80040 -12.71694 -12.52377 -12.38954 -12.23497 -12.07676 -11.87685 -11.61100 -11.50312 -11.40950 -10.82393 -10.70642 -9.87660 -8.30827 -6.47849 1.15524 1.42289 1.45054 1.56373 1.69281 2.03860 2.31893 2.56200 3.04051 3.21928 3.55547 3.86501 4.15054 4.26807 4.37007 4.44355 4.53377 4.56792 4.73482 5.00971 5.05577 5.10824 5.20174 5.20759 5.23444 5.41630 5.45906 5.56629 5.65681 5.82267 6.62570 6.84080 6.95321 7.20890 7.42303 8.81618 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037411 B = 0.005238 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.262012 B = 5344.268704 C = 5672.707127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.266 3.734 10 N -0.704 5.704 11 C 0.501 3.499 12 O -0.603 6.603 13 C -0.098 4.098 14 H 0.115 0.885 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.097 4.097 18 C -0.082 4.082 19 H 0.112 0.888 20 C 0.493 3.507 21 O -0.552 6.552 22 O -0.504 6.504 23 H 0.269 0.731 24 H -0.018 1.018 25 H -0.009 1.009 26 H 0.408 0.592 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.556 -17.311 2.725 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.143 3.857 10 N -0.353 5.353 11 C 0.289 3.711 12 O -0.486 6.486 13 C -0.119 4.119 14 H 0.133 0.867 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.134 4.134 18 C -0.102 4.102 19 H 0.130 0.870 20 C 0.337 3.663 21 O -0.443 6.443 22 O -0.317 6.317 23 H 0.078 0.922 24 H 0.000 1.000 25 H 0.009 0.991 26 H 0.244 0.756 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 9.695 -17.025 2.878 19.802 hybrid contribution -0.176 1.080 -1.049 1.516 sum 9.518 -15.945 1.829 18.660 Atomic orbital electron populations 1.70143 1.08339 1.28619 1.49936 1.26092 0.95788 1.03983 0.93739 0.85128 0.78551 0.76793 0.78567 1.19754 1.20793 1.17715 1.21612 0.94310 0.90511 1.53010 0.89792 1.18563 0.88711 0.84422 0.93999 1.46161 1.11193 1.05486 1.72447 1.21293 0.89615 0.85170 0.75026 1.90599 1.19379 1.85463 1.53139 1.21956 0.96256 0.90222 1.03505 0.86720 1.22234 1.00375 0.99832 0.92751 1.22387 1.02994 0.92968 0.97070 1.22517 0.98812 0.96928 0.95144 1.21873 1.03714 0.94644 0.89939 0.86975 1.23455 0.72173 0.78567 0.92083 1.90702 1.46987 1.60480 1.46145 1.84482 1.73920 1.34043 1.39297 0.92208 0.99978 0.99097 0.75630 0.91886 0.87636 0.91347 0.87624 0.89213 0.88228 0.71159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.99 42.83 29.54 68.60 2.03 44.85 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.56 -30.96 9.28 25.60 0.24 -30.73 16 8 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.27 15.10 5.43 85.63 0.46 15.56 16 10 N -0.70 -31.33 5.44 -466.78 -2.54 -33.87 16 11 C 0.50 21.23 6.91 87.65 0.61 21.83 16 12 O -0.60 -30.94 15.40 -3.02 -0.05 -30.99 16 13 C -0.10 -2.88 2.65 -10.82 -0.03 -2.91 16 14 H 0.11 3.35 6.90 -2.39 -0.02 3.33 16 15 C -0.11 -2.40 6.41 31.32 0.20 -2.19 16 16 C -0.12 -1.83 6.83 31.67 0.22 -1.62 16 17 C -0.10 -1.57 6.30 31.90 0.20 -1.37 16 18 C -0.08 -2.17 2.69 -10.45 -0.03 -2.20 16 19 H 0.11 3.48 6.88 -2.39 -0.02 3.46 16 20 C 0.49 13.60 7.63 71.24 0.54 14.14 16 21 O -0.55 -19.11 16.21 21.97 0.36 -18.76 16 22 O -0.50 -10.00 13.40 -51.36 -0.69 -10.69 16 23 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.41 15.16 8.32 -92.71 -0.77 14.39 16 27 H 0.06 1.54 7.62 -2.39 -0.02 1.53 16 28 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.43 4.70 9.10 -74.06 -0.67 4.03 16 Total: -1.00 -78.62 285.83 1.96 -76.66 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.30 Total: 18.44 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 2.87 Total: 11.19 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -2.26 Total: -90.70 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -0.38 Total: -60.43 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -78.62 1.96 -76.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168636969.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.564 kcal (2) G-P(sol) polarization free energy of solvation -78.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds