Wall clock time and date at job start Mon Mar 30 2020 03:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00265 * 2 1 4 4 H 1.48496 * 109.47251 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47149 * 120.00276 * 3 2 1 6 6 H 1.48501 * 109.47261 * 240.00373 * 3 2 1 7 7 C 1.37882 * 119.99559 * 179.72547 * 2 1 3 8 8 H 1.08001 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00201 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99614 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99959 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.99908 * 179.97438 * 11 10 9 14 14 H 1.09002 * 110.02054 * 331.17596 * 13 11 10 15 15 C 1.54264 * 110.03773 * 209.73095 * 13 11 10 16 16 C 1.54889 * 104.20023 * 217.10919 * 15 13 11 17 17 C 1.54892 * 102.74812 * 37.93779 * 16 15 13 18 18 C 1.53875 * 110.03204 * 92.56358 * 13 11 10 19 19 H 1.08998 * 110.03910 * 238.57212 * 18 13 11 20 20 C 1.50707 * 110.03146 * 0.02562 * 18 13 11 21 21 O 1.20828 * 119.99452 * 87.52227 * 20 18 13 22 22 O 1.34225 * 119.99836 * 267.52139 * 20 18 13 23 23 H 0.96999 * 120.00405 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46978 * 300.00312 * 9 7 2 25 25 H 1.08998 * 109.46819 * 60.00175 * 9 7 2 26 26 H 0.96994 * 119.99874 * 0.02562 * 10 9 7 27 27 H 1.09004 * 110.48072 * 335.78573 * 15 13 11 28 28 H 1.09000 * 110.48563 * 98.42591 * 15 13 11 29 29 H 1.09005 * 110.75173 * 279.63009 * 16 15 13 30 30 H 1.08988 * 110.75542 * 156.25744 * 16 15 13 31 31 H 1.08991 * 110.48454 * 203.38097 * 17 16 15 32 32 H 1.09004 * 110.48272 * 80.73900 * 17 16 15 33 33 H 0.96705 * 116.99686 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1029 1.6963 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0044 -1.1941 0.0057 8 1 3.0844 -1.1942 0.0053 9 6 1.2509 -2.4992 0.0126 10 7 2.2029 -3.6127 0.0172 11 6 1.7535 -4.8834 0.0231 12 8 0.5611 -5.1049 0.0241 13 6 2.7327 -6.0288 0.0272 14 1 3.6568 -5.7316 -0.4686 15 6 2.1190 -7.2514 -0.6857 16 6 2.6289 -8.4638 0.1323 17 6 2.5822 -7.9377 1.5884 18 6 3.0273 -6.4652 1.4731 19 1 4.0944 -6.3805 1.6787 20 6 2.2452 -5.6129 2.4391 21 8 1.1203 -5.9274 2.7483 22 8 2.7983 -4.5044 2.9558 23 1 -0.4851 -0.8400 0.0004 24 1 0.6246 -2.5524 0.9030 25 1 0.6239 -2.5613 -0.8769 26 1 3.1565 -3.4355 0.0159 27 1 1.0304 -7.2028 -0.6572 28 1 2.4724 -7.3099 -1.7151 29 1 3.6492 -8.7206 -0.1530 30 1 1.9653 -9.3195 0.0092 31 1 3.2736 -8.4971 2.2184 32 1 1.5684 -8.0000 1.9841 33 1 2.2578 -3.9898 3.5708 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168637056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:52 Heat of formation + Delta-G solvation = -151.970908 kcal Electronic energy + Delta-G solvation = -17951.491748 eV Core-core repulsion = 14976.128780 eV Total energy + Delta-G solvation = -2975.362968 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80497 -38.83068 -36.97696 -35.71331 -34.41964 -32.46179 -29.85480 -29.33696 -26.58077 -23.53106 -22.74557 -21.05846 -20.50950 -19.20726 -18.12491 -17.43398 -16.74335 -16.13779 -15.65270 -15.08282 -14.81038 -14.14083 -13.97972 -13.76025 -13.10617 -12.97995 -12.42416 -12.17757 -12.01658 -11.55931 -11.36578 -11.21303 -11.13178 -11.04148 -10.92506 -10.79435 -10.69049 -10.27118 -10.17218 -9.19497 -8.79512 -8.69916 -8.02540 -6.52821 -4.26590 2.39257 3.07577 3.17502 3.36504 3.38294 3.57472 3.95027 4.30030 4.44014 4.55061 4.87026 5.21412 5.23295 5.26139 5.31142 5.34527 5.46986 5.51313 5.55456 5.78094 5.92405 6.02185 6.13278 6.37479 6.76485 6.96897 7.19230 7.28253 7.63558 8.11775 8.24867 8.42935 8.69361 8.92897 9.47262 10.87042 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037628 B = 0.006282 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.940947 B = 4456.449132 C = 4670.457608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.076 2.924 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.622 4.622 8 H 0.057 0.943 9 C 0.242 3.758 10 N -0.700 5.700 11 C 0.487 3.513 12 O -0.539 6.539 13 C -0.103 4.103 14 H 0.100 0.900 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.070 4.070 19 H 0.109 0.891 20 C 0.473 3.527 21 O -0.497 6.497 22 O -0.511 6.511 23 H 0.272 0.728 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.394 0.606 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.270 -13.762 2.176 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.184 4.184 3 Si 0.903 3.097 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.660 4.660 8 H 0.076 0.924 9 C 0.120 3.880 10 N -0.349 5.349 11 C 0.271 3.729 12 O -0.417 6.417 13 C -0.124 4.124 14 H 0.119 0.881 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.090 4.090 19 H 0.127 0.873 20 C 0.314 3.686 21 O -0.383 6.383 22 O -0.322 6.322 23 H 0.083 0.917 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.227 0.773 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 9.108 -12.542 1.992 15.627 hybrid contribution 0.377 -1.081 0.421 1.220 sum 9.484 -13.623 2.413 16.774 Atomic orbital electron populations 1.70758 1.06897 1.31039 1.44929 1.25888 0.96407 1.02756 0.93317 0.83444 0.74793 0.74861 0.76583 1.20581 1.21271 1.21282 1.22047 0.94543 0.91417 1.57977 0.92434 1.19140 0.88965 0.83584 0.96273 1.46308 1.11071 1.05624 1.71854 1.20408 0.89625 0.84505 0.78369 1.90687 1.16490 1.84585 1.49894 1.21950 0.99881 0.96163 0.94455 0.88133 1.22395 1.02879 0.91510 0.98322 1.22458 1.01308 0.97837 0.94014 1.22475 1.03480 0.91278 0.98127 1.21566 1.00867 0.94791 0.91784 0.87287 1.23206 0.85833 0.79762 0.79785 1.90721 1.19216 1.70737 1.57629 1.84493 1.50562 1.37268 1.59917 0.91739 0.96811 0.96665 0.77315 0.89116 0.90884 0.91140 0.90710 0.90715 0.89231 0.72980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.65 55.43 0.76 -26.74 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.39 29.90 -169.99 -5.08 19.31 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.62 -17.09 9.28 -34.44 -0.32 -17.41 16 8 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 9 C 0.24 6.45 4.74 -5.19 -0.02 6.42 16 10 N -0.70 -14.98 5.55 -61.47 -0.34 -15.32 16 11 C 0.49 9.89 4.92 -10.99 -0.05 9.83 16 12 O -0.54 -13.31 15.21 3.29 0.05 -13.26 16 13 C -0.10 -1.47 3.29 -90.66 -0.30 -1.77 16 14 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.11 -1.46 6.31 -25.07 -0.16 -1.62 16 16 C -0.12 -1.17 6.91 -24.74 -0.17 -1.34 16 17 C -0.12 -1.31 6.31 -25.07 -0.16 -1.47 16 18 C -0.07 -0.91 3.40 -90.65 -0.31 -1.22 16 19 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 20 C 0.47 7.91 5.42 36.01 0.20 8.10 16 21 O -0.50 -10.08 15.97 -21.15 -0.34 -10.42 16 22 O -0.51 -7.79 13.42 -39.24 -0.53 -8.32 16 23 H 0.27 8.46 7.22 -40.82 -0.29 8.16 16 24 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 25 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 26 H 0.39 7.38 8.32 -40.82 -0.34 7.04 16 27 H 0.09 1.45 6.87 -51.93 -0.36 1.10 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.67 8.14 -51.94 -0.42 0.25 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.24 6.87 -51.93 -0.36 0.89 16 33 H 0.41 5.32 9.10 45.56 0.41 5.73 16 LS Contribution 281.92 15.07 4.25 4.25 Total: -1.00 -35.43 281.92 -6.12 -41.55 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.50 Total: 8.89 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.39 Total: 0.06 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.42 Total: -42.05 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.81 Total: -32.00 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.43 -6.12 -41.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168637056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.421 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds