Wall clock time and date at job start Mon Mar 30 2020 03:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00265 * 2 1 4 4 H 1.48496 * 109.47251 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47149 * 120.00276 * 3 2 1 6 6 H 1.48501 * 109.47261 * 240.00373 * 3 2 1 7 7 C 1.37882 * 119.99559 * 179.72547 * 2 1 3 8 8 H 1.08001 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00201 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99614 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99959 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.99908 * 179.97438 * 11 10 9 14 14 H 1.09002 * 110.02054 * 331.17596 * 13 11 10 15 15 C 1.54264 * 110.03773 * 209.73095 * 13 11 10 16 16 C 1.54889 * 104.20023 * 217.10919 * 15 13 11 17 17 C 1.54892 * 102.74812 * 37.93779 * 16 15 13 18 18 C 1.53875 * 110.03204 * 92.56358 * 13 11 10 19 19 H 1.08998 * 110.03910 * 238.57212 * 18 13 11 20 20 C 1.50707 * 110.03146 * 0.02562 * 18 13 11 21 21 O 1.20828 * 119.99452 * 87.52227 * 20 18 13 22 22 O 1.34225 * 119.99836 * 267.52139 * 20 18 13 23 23 H 0.96999 * 120.00405 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46978 * 300.00312 * 9 7 2 25 25 H 1.08998 * 109.46819 * 60.00175 * 9 7 2 26 26 H 0.96994 * 119.99874 * 0.02562 * 10 9 7 27 27 H 1.09004 * 110.48072 * 335.78573 * 15 13 11 28 28 H 1.09000 * 110.48563 * 98.42591 * 15 13 11 29 29 H 1.09005 * 110.75173 * 279.63009 * 16 15 13 30 30 H 1.08988 * 110.75542 * 156.25744 * 16 15 13 31 31 H 1.08991 * 110.48454 * 203.38097 * 17 16 15 32 32 H 1.09004 * 110.48272 * 80.73900 * 17 16 15 33 33 H 0.96705 * 116.99686 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1029 1.6963 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0044 -1.1941 0.0057 8 1 3.0844 -1.1942 0.0053 9 6 1.2509 -2.4992 0.0126 10 7 2.2029 -3.6127 0.0172 11 6 1.7535 -4.8834 0.0231 12 8 0.5611 -5.1049 0.0241 13 6 2.7327 -6.0288 0.0272 14 1 3.6568 -5.7316 -0.4686 15 6 2.1190 -7.2514 -0.6857 16 6 2.6289 -8.4638 0.1323 17 6 2.5822 -7.9377 1.5884 18 6 3.0273 -6.4652 1.4731 19 1 4.0944 -6.3805 1.6787 20 6 2.2452 -5.6129 2.4391 21 8 1.1203 -5.9274 2.7483 22 8 2.7983 -4.5044 2.9558 23 1 -0.4851 -0.8400 0.0004 24 1 0.6246 -2.5524 0.9030 25 1 0.6239 -2.5613 -0.8769 26 1 3.1565 -3.4355 0.0159 27 1 1.0304 -7.2028 -0.6572 28 1 2.4724 -7.3099 -1.7151 29 1 3.6492 -8.7206 -0.1530 30 1 1.9653 -9.3195 0.0092 31 1 3.2736 -8.4971 2.2184 32 1 1.5684 -8.0000 1.9841 33 1 2.2578 -3.9898 3.5708 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168637056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:51 Heat of formation + Delta-G solvation = -179.844157 kcal Electronic energy + Delta-G solvation = -17952.700423 eV Core-core repulsion = 14976.128780 eV Total energy + Delta-G solvation = -2976.571643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.13475 -40.38163 -38.21111 -37.05563 -36.43689 -34.50231 -31.00972 -30.46417 -28.52138 -25.21119 -24.33988 -22.50135 -21.56991 -20.68493 -19.58013 -19.04017 -18.34754 -17.47185 -17.20584 -16.49870 -16.04433 -15.76188 -15.65063 -15.34739 -14.59157 -14.51102 -14.21176 -14.12796 -13.23147 -13.08648 -12.70888 -12.55519 -12.54447 -12.33181 -12.05208 -11.96796 -11.92676 -11.71279 -11.45999 -11.04576 -10.79130 -10.78129 -10.02220 -8.82410 -6.58282 1.08576 1.51451 1.54931 1.63959 1.82639 1.95188 2.37794 2.57436 3.05811 3.29578 3.50003 3.75543 4.09957 4.26490 4.31838 4.39163 4.40113 4.43348 4.69971 4.73708 4.88792 4.97628 5.09328 5.15369 5.18314 5.37165 5.46802 5.51409 5.55533 6.04505 6.26861 6.72350 6.85663 7.19502 7.36354 8.56319 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037628 B = 0.006282 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.940947 B = 4456.449132 C = 4670.457608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.034 4.034 3 Si 1.131 2.869 4 H -0.288 1.288 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.625 4.625 8 H 0.079 0.921 9 C 0.258 3.742 10 N -0.695 5.695 11 C 0.482 3.518 12 O -0.591 6.591 13 C -0.095 4.095 14 H 0.145 0.855 15 C -0.118 4.118 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.068 4.068 19 H 0.157 0.843 20 C 0.464 3.536 21 O -0.545 6.545 22 O -0.508 6.508 23 H 0.251 0.749 24 H -0.026 1.026 25 H -0.022 1.022 26 H 0.411 0.589 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.379 -14.523 1.801 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.232 4.232 3 Si 0.950 3.050 4 H -0.214 1.214 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.662 4.662 8 H 0.097 0.903 9 C 0.134 3.866 10 N -0.344 5.344 11 C 0.269 3.731 12 O -0.472 6.472 13 C -0.116 4.116 14 H 0.163 0.837 15 C -0.156 4.156 16 C -0.141 4.141 17 C -0.154 4.154 18 C -0.088 4.088 19 H 0.175 0.825 20 C 0.308 3.692 21 O -0.435 6.435 22 O -0.320 6.320 23 H 0.060 0.940 24 H -0.008 1.008 25 H -0.004 1.004 26 H 0.247 0.753 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.129 0.871 32 H 0.071 0.929 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 13.279 -13.343 1.618 18.894 hybrid contribution -0.960 -0.886 0.556 1.419 sum 12.320 -14.229 2.174 18.946 Atomic orbital electron populations 1.70915 1.08422 1.29730 1.47591 1.27712 0.96262 1.07321 0.91894 0.82783 0.73896 0.69799 0.78541 1.21379 1.18638 1.18640 1.22399 0.95606 0.91436 1.56799 0.90275 1.18594 0.89294 0.85934 0.92750 1.46076 1.10983 1.05049 1.72320 1.21604 0.90145 0.85286 0.76103 1.90671 1.19516 1.85355 1.51668 1.22136 0.99592 0.93589 0.96264 0.83695 1.22456 1.00313 0.92523 1.00330 1.22475 1.03552 0.96303 0.91815 1.22534 1.02302 0.90723 0.99867 1.21906 1.02860 0.94667 0.89321 0.82546 1.24185 0.85591 0.79807 0.79651 1.90709 1.21510 1.71867 1.59426 1.84485 1.50548 1.37067 1.59927 0.94013 1.00797 1.00427 0.75317 0.93498 0.88486 0.87155 0.90008 0.87120 0.92934 0.72319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.69 13.65 21.45 0.29 -58.40 16 2 C -0.03 -1.91 5.46 84.66 0.46 -1.45 16 3 Si 1.13 47.86 29.90 68.60 2.05 49.91 16 4 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.62 -34.41 9.28 25.60 0.24 -34.17 16 8 H 0.08 3.95 7.60 -2.91 -0.02 3.93 16 9 C 0.26 14.35 4.74 85.63 0.41 14.76 16 10 N -0.69 -29.75 5.55 -466.80 -2.59 -32.34 16 11 C 0.48 19.71 4.92 87.66 0.43 20.14 16 12 O -0.59 -30.89 15.21 -0.86 -0.01 -30.90 16 13 C -0.09 -2.45 3.29 -10.82 -0.04 -2.48 16 14 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 15 C -0.12 -2.79 6.31 31.67 0.20 -2.59 16 16 C -0.10 -1.64 6.91 31.89 0.22 -1.42 16 17 C -0.12 -2.31 6.31 31.67 0.20 -2.11 16 18 C -0.07 -1.56 3.40 -10.81 -0.04 -1.60 16 19 H 0.16 2.16 8.14 -2.39 -0.02 2.14 16 20 C 0.46 15.33 5.42 71.24 0.39 15.72 16 21 O -0.55 -23.13 15.97 24.25 0.39 -22.74 16 22 O -0.51 -15.16 13.42 -51.37 -0.69 -15.85 16 23 H 0.25 16.58 7.22 -92.71 -0.67 15.91 16 24 H -0.03 -1.62 8.01 -2.39 -0.02 -1.64 16 25 H -0.02 -1.38 8.00 -2.39 -0.02 -1.40 16 26 H 0.41 14.59 8.32 -92.71 -0.77 13.81 16 27 H 0.05 1.54 6.87 -2.39 -0.02 1.52 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.45 6.87 -2.38 -0.02 1.43 16 33 H 0.42 11.04 9.10 -74.05 -0.67 10.36 16 Total: -1.00 -83.74 281.92 1.71 -82.03 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.20 Total: 23.49 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 2.47 Total: 4.80 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -2.30 Total: -90.74 kcal Atomic # 8 Polarization: -69.18 SS G_CDS: -0.32 Total: -69.49 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.05 Total: 49.91 kcal Total: -83.74 1.71 -82.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168637056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.810 kcal (2) G-P(sol) polarization free energy of solvation -83.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds