Wall clock time and date at job start Mon Mar 30 2020 04:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 6 6 H 1.07995 * 120.00485 * 119.99509 * 5 3 2 7 7 C 1.37880 * 119.99796 * 300.00708 * 5 3 2 8 8 N 1.31514 * 119.99726 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00037 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47160 * 59.99611 * 9 7 5 11 11 H 1.48499 * 109.47085 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47121 * 299.99671 * 9 7 5 13 13 O 1.45200 * 109.47292 * 295.00145 * 3 2 1 14 14 C 1.34236 * 117.00099 * 89.99460 * 13 3 2 15 15 O 1.20826 * 119.99519 * 0.02562 * 14 13 3 16 16 C 1.50692 * 120.00297 * 179.97438 * 14 13 3 17 17 H 1.09001 * 110.85962 * 303.79752 * 16 14 13 18 18 C 1.54479 * 110.97190 * 180.02562 * 16 14 13 19 19 N 1.46760 * 105.47582 * 216.47088 * 18 16 14 20 20 C 1.34418 * 111.30108 * 17.01567 * 19 18 16 21 21 O 1.21287 * 124.94243 * 179.59592 * 20 19 18 22 22 C 1.51283 * 110.11784 * 359.59067 * 20 19 18 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 0.97005 * 120.00053 * 180.02562 * 8 7 5 29 29 H 1.09006 * 110.24269 * 335.46548 * 18 16 14 30 30 H 1.08998 * 110.24537 * 97.38066 * 18 16 14 31 31 H 0.97004 * 124.35178 * 196.99514 * 19 18 16 32 32 H 1.08995 * 110.49138 * 225.06778 * 22 20 19 33 33 H 1.08998 * 110.48289 * 102.42629 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3374 2.1731 9 14 6.0050 0.8802 1.3810 10 1 6.5004 2.2802 1.3807 11 1 6.3979 0.2168 2.6502 12 1 6.5967 0.1456 0.2341 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7254 -1.2559 15 8 -0.2190 2.7376 -0.2652 16 6 0.0073 3.4226 -2.5083 17 1 0.7414 4.1572 -2.8391 18 6 -1.3742 4.0799 -2.2943 19 7 -2.0867 3.9169 -3.5670 20 6 -1.5080 2.9767 -4.3337 21 8 -1.8980 2.6385 -5.4312 22 6 -0.2994 2.4017 -3.6285 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.8293 -0.0605 2.9501 29 1 -1.9127 3.5737 -1.4931 30 1 -1.2563 5.1377 -2.0593 31 1 -2.8743 4.4225 -3.8220 32 1 0.5429 2.3251 -4.3160 33 1 -0.5347 1.4266 -3.2020 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188014788.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:36 Heat of formation + Delta-G solvation = -133.405151 kcal Electronic energy + Delta-G solvation = -17710.296867 eV Core-core repulsion = 14735.738971 eV Total energy + Delta-G solvation = -2974.557896 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.71155 -39.33955 -36.60422 -35.64130 -33.60484 -31.80567 -31.30083 -27.79565 -27.35958 -24.14607 -22.93504 -20.73378 -20.38655 -19.42886 -17.72470 -17.40245 -16.69614 -16.09850 -15.34690 -15.08884 -14.81480 -14.35470 -13.71059 -13.63044 -13.26061 -13.02224 -12.86347 -12.13636 -11.65370 -11.60698 -11.49562 -11.24885 -11.22827 -10.99458 -10.71929 -10.35365 -10.13610 -9.86523 -9.67188 -9.44980 -9.22239 -8.89310 -8.51019 -6.23850 -4.31418 2.49000 2.77015 3.11479 3.23055 3.27289 3.29406 3.50013 4.17843 4.27147 4.42153 4.82417 4.92830 5.08527 5.36531 5.49849 5.59118 5.75041 5.85440 6.15947 6.22012 6.37926 6.62245 6.78433 6.83422 6.88439 7.08643 7.16157 7.54994 7.66508 7.85433 8.08597 8.11449 8.50763 8.80032 9.34116 10.82781 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.040850 B = 0.005728 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.277933 B = 4886.847434 C = 5036.916744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.349 6.349 14 C 0.464 3.536 15 O -0.511 6.511 16 C -0.101 4.101 17 H 0.124 0.876 18 C 0.111 3.889 19 N -0.731 5.731 20 C 0.523 3.477 21 O -0.536 6.536 22 C -0.143 4.143 23 H 0.053 0.947 24 H 0.030 0.970 25 H 0.034 0.966 26 H 0.109 0.891 27 H 0.043 0.957 28 H 0.267 0.733 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.411 0.589 32 H 0.116 0.884 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 5.718 -6.704 11.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.265 6.265 14 C 0.306 3.694 15 O -0.401 6.401 16 C -0.121 4.121 17 H 0.142 0.858 18 C -0.013 4.013 19 N -0.387 5.387 20 C 0.310 3.690 21 O -0.413 6.413 22 C -0.183 4.183 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.127 0.873 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.250 0.750 32 H 0.135 0.865 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.878 5.338 -6.732 11.005 hybrid contribution 0.593 0.188 0.295 0.689 sum -6.284 5.526 -6.437 10.558 Atomic orbital electron populations 1.21865 0.98389 0.99134 1.00607 1.22036 0.92594 0.99328 1.03530 1.20731 0.95102 0.88789 0.78420 0.93392 1.20994 0.89595 1.39262 1.06331 0.91319 1.24878 0.99267 0.94667 0.95032 1.69873 1.35542 1.37650 1.09456 0.86336 0.83802 0.78507 0.77520 1.19984 1.21022 1.19904 1.86482 1.33612 1.62089 1.44322 1.22611 0.81190 0.77110 0.88522 1.90625 1.55471 1.58476 1.35513 1.21871 0.98299 0.98620 0.93289 0.85819 1.22041 0.90996 1.02078 0.86192 1.46223 1.32083 1.41139 1.19246 1.20842 0.84793 0.78888 0.84497 1.90754 1.68137 1.62767 1.19656 1.22296 0.98354 1.00003 0.97632 0.92764 0.95118 0.94711 0.87256 0.93846 0.92268 0.88714 0.89328 0.74981 0.86548 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.57 37.16 0.32 -2.63 16 2 C -0.14 -3.23 5.49 -26.73 -0.15 -3.38 16 3 C 0.22 5.55 2.25 -27.89 -0.06 5.49 16 4 H 0.05 1.33 7.16 -51.92 -0.37 0.96 16 5 C -0.52 -14.03 8.90 -34.44 -0.31 -14.34 16 6 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.26 11.29 55.43 0.63 -23.64 16 9 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 O -0.35 -7.54 9.81 -39.27 -0.39 -7.93 16 14 C 0.46 8.38 5.64 36.00 0.20 8.58 16 15 O -0.51 -10.33 12.65 -18.75 -0.24 -10.57 16 16 C -0.10 -1.28 3.66 -90.14 -0.33 -1.61 16 17 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 18 C 0.11 1.17 7.14 -3.12 -0.02 1.15 16 19 N -0.73 -7.58 6.24 -59.20 -0.37 -7.95 16 20 C 0.52 6.97 8.43 -10.86 -0.09 6.88 16 21 O -0.54 -9.07 18.03 5.55 0.10 -8.97 16 22 C -0.14 -1.78 6.41 -26.74 -0.17 -1.96 16 23 H 0.05 1.17 7.80 -51.93 -0.40 0.77 16 24 H 0.03 0.59 6.06 -51.93 -0.31 0.28 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.11 2.83 5.95 -51.93 -0.31 2.52 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.09 1.13 6.96 -51.93 -0.36 0.77 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.41 3.38 8.96 -40.82 -0.37 3.01 16 32 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.11 1.47 7.89 -51.93 -0.41 1.06 16 LS Contribution 278.26 15.07 4.19 4.19 Total: -1.00 -30.65 278.26 -5.99 -36.64 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.20 Total: 3.04 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.70 Total: -0.20 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.26 Total: -31.59 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.52 Total: -27.46 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.65 -5.99 -36.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188014788.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.764 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds