Wall clock time and date at job start Mon Mar 30 2020 04:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 6 6 H 1.07995 * 120.00485 * 119.99509 * 5 3 2 7 7 C 1.37880 * 119.99796 * 300.00708 * 5 3 2 8 8 N 1.31514 * 119.99726 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00037 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47160 * 59.99611 * 9 7 5 11 11 H 1.48499 * 109.47085 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47121 * 299.99671 * 9 7 5 13 13 O 1.45200 * 109.47292 * 295.00145 * 3 2 1 14 14 C 1.34236 * 117.00099 * 89.99460 * 13 3 2 15 15 O 1.20826 * 119.99519 * 0.02562 * 14 13 3 16 16 C 1.50692 * 120.00297 * 179.97438 * 14 13 3 17 17 H 1.09001 * 110.85962 * 303.79752 * 16 14 13 18 18 C 1.54479 * 110.97190 * 180.02562 * 16 14 13 19 19 N 1.46760 * 105.47582 * 216.47088 * 18 16 14 20 20 C 1.34418 * 111.30108 * 17.01567 * 19 18 16 21 21 O 1.21287 * 124.94243 * 179.59592 * 20 19 18 22 22 C 1.51283 * 110.11784 * 359.59067 * 20 19 18 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 0.97005 * 120.00053 * 180.02562 * 8 7 5 29 29 H 1.09006 * 110.24269 * 335.46548 * 18 16 14 30 30 H 1.08998 * 110.24537 * 97.38066 * 18 16 14 31 31 H 0.97004 * 124.35178 * 196.99514 * 19 18 16 32 32 H 1.08995 * 110.49138 * 225.06778 * 22 20 19 33 33 H 1.08998 * 110.48289 * 102.42629 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3374 2.1731 9 14 6.0050 0.8802 1.3810 10 1 6.5004 2.2802 1.3807 11 1 6.3979 0.2168 2.6502 12 1 6.5967 0.1456 0.2341 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7254 -1.2559 15 8 -0.2190 2.7376 -0.2652 16 6 0.0073 3.4226 -2.5083 17 1 0.7414 4.1572 -2.8391 18 6 -1.3742 4.0799 -2.2943 19 7 -2.0867 3.9169 -3.5670 20 6 -1.5080 2.9767 -4.3337 21 8 -1.8980 2.6385 -5.4312 22 6 -0.2994 2.4017 -3.6285 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.8293 -0.0605 2.9501 29 1 -1.9127 3.5737 -1.4931 30 1 -1.2563 5.1377 -2.0593 31 1 -2.8743 4.4225 -3.8220 32 1 0.5429 2.3251 -4.3160 33 1 -0.5347 1.4266 -3.2020 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188014788.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:36 Heat of formation + Delta-G solvation = -154.448629 kcal Electronic energy + Delta-G solvation = -17711.209380 eV Core-core repulsion = 14735.738971 eV Total energy + Delta-G solvation = -2975.470410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.95303 -40.71794 -37.99044 -37.06654 -35.48613 -33.40340 -32.65644 -29.30461 -28.77971 -25.69074 -24.54550 -22.14323 -21.63427 -20.97146 -19.09023 -18.61655 -18.45202 -17.61031 -16.94494 -16.51817 -16.17869 -15.76725 -14.96424 -14.79000 -14.72526 -14.55993 -14.15455 -13.69172 -13.34014 -13.26876 -13.12117 -12.77600 -12.65603 -12.53817 -12.39169 -12.13386 -11.73897 -11.46867 -11.32744 -10.99722 -10.79937 -10.49363 -10.17565 -8.24826 -6.41008 1.30919 1.44555 1.45452 1.47293 1.55104 1.89364 2.35335 2.45480 3.05330 3.16628 3.38221 3.80009 3.84035 4.18286 4.39520 4.41386 4.50619 4.57830 4.63684 4.78734 4.86837 4.89873 5.12301 5.23757 5.41624 5.54744 5.70402 5.70872 5.92975 6.01422 6.16593 6.63442 6.99359 7.15630 7.30581 8.81348 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.040850 B = 0.005728 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.277933 B = 4886.847434 C = 5036.916744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.132 4.132 3 C 0.226 3.774 4 H 0.012 0.988 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.977 3.023 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.266 1.266 13 O -0.358 6.358 14 C 0.460 3.540 15 O -0.534 6.534 16 C -0.090 4.090 17 H 0.153 0.847 18 C 0.117 3.883 19 N -0.712 5.712 20 C 0.525 3.475 21 O -0.575 6.575 22 C -0.141 4.141 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.045 0.955 28 H 0.270 0.730 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.424 0.576 32 H 0.129 0.871 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 6.579 -7.527 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.170 4.170 3 C 0.173 3.827 4 H 0.029 0.971 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.800 3.200 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.191 1.191 13 O -0.274 6.274 14 C 0.303 3.697 15 O -0.424 6.424 16 C -0.110 4.110 17 H 0.171 0.829 18 C -0.007 4.007 19 N -0.368 5.368 20 C 0.311 3.689 21 O -0.456 6.456 22 C -0.181 4.181 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.266 0.734 32 H 0.147 0.853 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.698 6.233 -7.548 11.861 hybrid contribution 0.459 -0.039 0.578 0.739 sum -6.239 6.194 -6.970 11.220 Atomic orbital electron populations 1.21723 0.96187 1.00561 1.00273 1.21882 0.94525 0.98268 1.02308 1.20362 0.94386 0.89233 0.78712 0.97053 1.21319 0.90732 1.39863 1.06785 0.91487 1.25738 1.03875 0.93971 0.94490 1.69999 1.37386 1.37974 1.09845 0.85324 0.78160 0.78762 0.77732 1.19333 1.20510 1.19091 1.86464 1.35724 1.62785 1.42433 1.23603 0.79713 0.76263 0.90094 1.90621 1.55677 1.59068 1.37057 1.21954 1.00074 0.98691 0.90258 0.82889 1.22078 0.89353 1.03723 0.85552 1.46117 1.32061 1.40094 1.18514 1.20865 0.84900 0.79040 0.84050 1.90742 1.69248 1.64156 1.21410 1.22294 0.98714 0.99495 0.97605 0.94320 0.94115 0.92368 0.89761 0.93612 0.92118 0.89900 0.85958 0.73433 0.85279 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.57 71.98 0.62 -4.73 16 2 C -0.13 -6.31 5.49 30.59 0.17 -6.14 16 3 C 0.23 11.55 2.25 29.85 0.07 11.62 16 4 H 0.01 0.67 7.16 -2.38 -0.02 0.65 16 5 C -0.55 -29.76 8.90 25.60 0.23 -29.53 16 6 H 0.07 3.55 7.81 -2.91 -0.02 3.52 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -50.76 11.29 21.45 0.24 -50.52 16 9 Si 0.98 41.56 29.54 68.60 2.03 43.59 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 13 O -0.36 -15.40 9.81 -51.47 -0.50 -15.91 16 14 C 0.46 16.20 5.64 71.23 0.40 16.60 16 15 O -0.53 -21.47 12.65 21.96 0.28 -21.19 16 16 C -0.09 -2.06 3.66 -10.48 -0.04 -2.10 16 17 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 18 C 0.12 2.12 7.14 86.83 0.62 2.74 16 19 N -0.71 -12.82 6.24 -459.80 -2.87 -15.69 16 20 C 0.52 12.94 8.43 87.90 0.74 13.68 16 21 O -0.58 -18.79 18.03 -3.05 -0.06 -18.84 16 22 C -0.14 -3.25 6.41 30.59 0.20 -3.05 16 23 H 0.04 1.68 7.80 -2.39 -0.02 1.66 16 24 H 0.04 1.55 6.06 -2.39 -0.01 1.54 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 4.48 5.95 -2.39 -0.01 4.46 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 29 H 0.08 1.80 6.96 -2.38 -0.02 1.78 16 30 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.42 5.75 8.96 -92.71 -0.83 4.92 16 32 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.10 2.59 7.89 -2.39 -0.02 2.57 16 Total: -1.00 -66.98 278.26 2.87 -64.11 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.30 Total: 13.89 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 3.45 Total: 0.56 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -2.63 Total: -66.21 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -0.28 Total: -55.94 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -66.98 2.87 -64.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188014788.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.336 kcal (2) G-P(sol) polarization free energy of solvation -66.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds