Wall clock time and date at job start Mon Mar 30 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48496 * 109.47377 * 240.00161 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47383 * 119.99775 * 3 2 1 7 7 C 1.40127 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00410 * 180.02562 * 7 2 1 9 9 C 1.40925 * 119.99643 * 359.72256 * 7 2 1 10 10 N 1.34032 * 120.69759 * 0.27602 * 9 7 2 11 11 C 1.32076 * 120.61097 * 180.02562 * 10 9 7 12 12 C 1.48272 * 118.93379 * 179.97438 * 11 10 9 13 13 C 1.39410 * 120.12443 * 359.72465 * 12 11 10 14 14 C 1.38004 * 119.86987 * 179.72352 * 13 12 11 15 15 C 1.38334 * 120.12368 * 0.55104 * 14 13 12 16 16 C 1.38332 * 120.26091 * 359.71942 * 15 14 13 17 17 C 1.37998 * 120.12805 * 0.02562 * 16 15 14 18 18 N 1.32986 * 122.13225 * 359.97438 * 11 10 9 19 19 C 1.31964 * 121.36060 * 0.02562 * 18 11 10 20 20 C 1.39695 * 119.20142 * 359.71998 * 19 18 11 21 21 N 1.38375 * 120.95831 * 180.27953 * 20 19 18 22 22 H 0.97000 * 120.00774 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.06698 * 359.97438 * 13 12 11 24 24 H 1.07990 * 119.93709 * 180.29646 * 14 13 12 25 25 H 1.08003 * 119.87288 * 179.74870 * 15 14 13 26 26 H 1.08007 * 119.93928 * 180.02562 * 16 15 14 27 27 H 1.07999 * 120.06789 * 180.02562 * 17 16 15 28 28 H 1.08001 * 120.39820 * 180.02562 * 19 18 11 29 29 H 0.96992 * 120.00264 * 180.26893 * 21 20 19 30 30 H 0.97004 * 119.99737 * 0.26914 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.0946 1.6966 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0946 1.6966 1.2125 7 6 2.0077 -1.2135 -0.0005 8 1 3.0877 -1.2135 -0.0001 9 6 1.3031 -2.4339 0.0048 10 7 -0.0371 -2.4503 0.0049 11 6 -0.6958 -3.5951 0.0105 12 6 -2.1783 -3.5698 0.0109 13 6 -2.8572 -2.3522 0.0114 14 6 -4.2372 -2.3348 0.0061 15 6 -4.9465 -3.5224 0.0118 16 6 -4.2782 -4.7335 0.0170 17 6 -2.8985 -4.7634 0.0171 18 7 -0.0723 -4.7698 0.0156 19 6 1.2450 -4.8481 0.0160 20 6 1.9977 -3.6714 0.0048 21 7 3.3809 -3.7112 -0.0010 22 1 -0.4851 0.8400 -0.0004 23 1 -2.3044 -1.4244 0.0118 24 1 -4.7642 -1.3922 0.0016 25 1 -6.0264 -3.5040 0.0117 26 1 -4.8372 -5.6577 0.0211 27 1 -2.3777 -5.7095 0.0208 28 1 1.7352 -5.8105 0.0198 29 1 3.8899 -2.8856 -0.0048 30 1 3.8415 -4.5650 -0.0013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215517737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:09 Heat of formation + Delta-G solvation = 47.836392 kcal Electronic energy + Delta-G solvation = -16210.864153 eV Core-core repulsion = 13583.767151 eV Total energy + Delta-G solvation = -2627.097002 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93483 -39.45067 -36.13980 -35.52863 -33.24329 -32.24689 -31.60541 -29.39167 -27.88526 -24.44104 -24.18001 -22.86106 -21.85799 -19.61088 -18.61202 -17.63072 -17.19268 -16.69032 -16.24784 -15.88331 -15.24935 -15.18151 -15.02158 -14.36788 -14.06382 -13.90511 -13.50886 -12.93019 -12.87897 -12.69038 -11.99734 -11.97612 -11.92165 -11.74437 -11.53371 -11.25204 -10.51543 -9.72425 -9.67206 -9.26792 -8.31591 -8.27081 -6.40466 0.14805 0.68352 1.04944 1.29999 1.42841 1.54435 1.61120 2.22473 2.84856 3.17369 3.39262 3.66737 4.02161 4.03421 4.29128 4.31217 4.45265 4.48821 4.79107 4.85711 4.89231 5.01887 5.20874 5.26376 5.42422 5.63839 5.74895 5.89051 6.06884 6.11270 6.28744 6.46323 6.76607 6.96972 7.24602 7.33280 8.27884 8.45751 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.008694 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.582497 B = 3219.742859 C = 4476.474944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.025 3.975 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.451 4.451 8 H 0.100 0.900 9 C 0.201 3.799 10 N -0.511 5.511 11 C 0.260 3.740 12 C -0.039 4.039 13 C -0.104 4.104 14 C -0.134 4.134 15 C -0.115 4.115 16 C -0.129 4.129 17 C -0.104 4.104 18 N -0.582 5.582 19 C 0.020 3.980 20 C 0.028 3.972 21 N -0.850 5.850 22 H 0.280 0.720 23 H 0.121 0.879 24 H 0.142 0.858 25 H 0.158 0.842 26 H 0.153 0.847 27 H 0.122 0.878 28 H 0.159 0.841 29 H 0.398 0.602 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 -1.831 0.013 3.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.118 0.882 9 C 0.064 3.936 10 N -0.232 5.232 11 C -0.007 4.007 12 C -0.041 4.041 13 C -0.124 4.124 14 C -0.152 4.152 15 C -0.133 4.133 16 C -0.147 4.147 17 C -0.124 4.124 18 N -0.303 5.303 19 C -0.142 4.142 20 C -0.083 4.083 21 N -0.394 5.394 22 H 0.090 0.910 23 H 0.139 0.861 24 H 0.160 0.840 25 H 0.175 0.825 26 H 0.171 0.829 27 H 0.140 0.860 28 H 0.176 0.824 29 H 0.228 0.772 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.830 -1.776 0.014 4.222 hybrid contribution 1.998 0.558 -0.001 2.075 sum -1.832 -1.218 0.013 2.200 Atomic orbital electron populations 1.70153 1.08899 1.29228 1.28685 1.26946 0.95724 1.04384 0.92764 0.85160 0.78522 0.75432 0.79969 1.18292 1.19716 1.18298 1.19599 0.94822 0.89585 1.44656 0.88250 1.19127 0.88685 0.92301 0.93464 1.69240 1.07720 1.26299 1.19964 1.21454 0.94789 0.85432 0.99064 1.18522 0.88781 0.94767 1.02035 1.21569 0.95261 0.97901 0.97689 1.21352 0.92714 0.99871 1.01246 1.21559 1.01198 0.91591 0.98945 1.21375 0.92904 0.99559 1.00864 1.21341 0.94888 0.97053 0.99079 1.67751 1.10492 1.28944 1.23077 1.22277 0.89408 0.96358 1.06108 1.19733 0.87166 0.95842 1.05581 1.41453 1.01468 1.10544 1.85891 0.90961 0.86124 0.84044 0.82462 0.82888 0.85988 0.82431 0.77206 0.77116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.18 11.34 21.85 0.25 -38.93 16 2 C 0.02 1.22 5.50 85.32 0.47 1.69 16 3 Si 0.99 36.48 29.56 68.60 2.03 38.50 16 4 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.45 -23.09 8.93 23.39 0.21 -22.88 16 8 H 0.10 4.50 6.23 -2.91 -0.02 4.48 16 9 C 0.20 11.04 6.59 40.38 0.27 11.31 16 10 N -0.51 -29.41 7.01 -182.39 -1.28 -30.69 16 11 C 0.26 14.16 7.55 137.56 1.04 15.20 16 12 C -0.04 -1.86 5.88 -20.04 -0.12 -1.98 16 13 C -0.10 -4.63 9.56 22.50 0.22 -4.42 16 14 C -0.13 -4.53 10.03 22.24 0.22 -4.31 16 15 C -0.11 -3.24 10.04 22.31 0.22 -3.01 16 16 C -0.13 -3.94 10.03 22.24 0.22 -3.71 16 17 C -0.10 -4.12 9.56 22.49 0.22 -3.90 16 18 N -0.58 -29.84 9.39 -188.65 -1.77 -31.61 16 19 C 0.02 0.92 11.20 85.03 0.95 1.87 16 20 C 0.03 1.34 6.85 39.37 0.27 1.61 16 21 N -0.85 -30.76 8.98 -49.79 -0.45 -31.21 16 22 H 0.28 13.32 8.29 -92.71 -0.77 12.55 16 23 H 0.12 6.05 7.32 -2.91 -0.02 6.03 16 24 H 0.14 3.92 8.06 -2.92 -0.02 3.89 16 25 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 26 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 27 H 0.12 4.86 7.50 -2.91 -0.02 4.84 16 28 H 0.16 6.07 8.06 -2.91 -0.02 6.05 16 29 H 0.40 13.69 6.96 -92.71 -0.65 13.04 16 30 H 0.40 11.45 8.86 -92.71 -0.82 10.63 16 Total: -1.00 -67.21 266.72 2.70 -64.51 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.27 Total: 41.96 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 4.19 Total: -12.54 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -3.25 Total: -132.44 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.50 kcal Total: -67.21 2.70 -64.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215517737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.347 kcal (2) G-P(sol) polarization free energy of solvation -67.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds