Wall clock time and date at job start Mon Mar 30 2020 03:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39156 * 125.89042 * 2 1 4 4 C 1.38826 * 132.80083 * 0.04851 * 3 2 1 5 5 C 1.38067 * 119.89607 * 179.97438 * 4 3 2 6 6 C 1.38445 * 120.27450 * 359.97438 * 5 4 3 7 7 C 1.38076 * 120.26387 * 0.02562 * 6 5 4 8 8 C 1.38771 * 119.89966 * 359.97438 * 7 6 5 9 9 N 1.39485 * 132.74682 * 179.97438 * 8 7 6 10 10 C 1.36638 * 143.70167 * 359.97438 * 9 8 7 11 11 C 1.39126 * 106.49107 * 180.02562 * 10 9 8 12 12 C 1.41118 * 126.32603 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99532 * 6.15936 * 12 11 10 14 14 C 1.39661 * 120.00017 * 186.15488 * 12 11 10 15 15 N 1.31047 * 120.00429 * 6.44733 * 14 12 11 16 16 Si 1.86802 * 120.00011 * 186.44727 * 14 12 11 17 17 H 1.48502 * 109.47238 * 265.01988 * 16 14 12 18 18 H 1.48506 * 109.46890 * 25.01287 * 16 14 12 19 19 H 1.48494 * 109.47440 * 145.01278 * 16 14 12 20 20 N 1.35886 * 107.35470 * 0.26044 * 11 10 9 21 21 C 1.31598 * 109.21280 * 359.56235 * 20 11 10 22 22 H 1.09001 * 109.46987 * 89.99686 * 1 2 3 23 23 H 1.09003 * 109.46780 * 209.99549 * 1 2 3 24 24 H 1.08999 * 109.46929 * 329.99599 * 1 2 3 25 25 H 1.07999 * 120.05437 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.86412 * 180.02562 * 5 4 3 27 27 H 1.08001 * 119.87279 * 180.02562 * 6 5 4 28 28 H 1.07997 * 120.05662 * 180.02562 * 7 6 5 29 29 H 1.07996 * 126.75294 * 0.02562 * 10 9 8 30 30 H 0.96994 * 120.00351 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2808 1.1274 0.0000 4 6 2.0086 2.4887 0.0009 5 6 3.0473 3.3982 0.0011 6 6 4.3601 2.9584 0.0011 7 6 4.6411 1.6066 0.0002 8 6 3.6041 0.6844 0.0000 9 7 3.5772 -0.7101 -0.0013 10 6 4.3647 -1.8268 -0.0031 11 6 3.5022 -2.9184 -0.0039 12 6 3.8760 -4.2791 -0.0062 13 1 4.9158 -4.5536 0.0927 14 6 2.9012 -5.2708 -0.1364 15 7 1.6576 -4.9390 -0.3827 16 14 3.3701 -7.0704 0.0406 17 1 3.6318 -7.6481 -1.3022 18 1 4.5935 -7.1833 0.8749 19 1 2.2582 -7.8102 0.6898 20 7 2.2332 -2.4323 -0.0084 21 6 2.2733 -1.1169 -0.0009 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 0.9859 2.8357 0.0022 26 1 2.8350 4.4571 0.0022 27 1 5.1676 3.6756 0.0017 28 1 5.6664 1.2672 0.0006 29 1 5.4443 -1.8561 -0.0038 30 1 0.9807 -5.6278 -0.4735 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215517805.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:21 Heat of formation + Delta-G solvation = 131.972702 kcal Electronic energy + Delta-G solvation = -16363.640993 eV Core-core repulsion = 13740.192415 eV Total energy + Delta-G solvation = -2623.448578 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.89407 -38.35061 -35.93898 -33.65450 -32.37330 -30.09052 -28.50572 -28.46221 -26.53776 -24.65600 -22.02105 -21.50840 -19.83092 -19.39935 -17.32438 -16.50423 -16.29302 -15.48955 -14.94622 -14.64917 -14.13877 -13.76012 -13.74671 -13.24730 -12.79777 -12.21853 -12.18242 -12.10217 -11.66189 -11.19019 -11.01588 -10.82312 -10.49293 -10.38139 -10.08775 -9.82821 -8.91857 -8.34071 -8.24572 -7.28316 -6.46948 -6.36471 -4.14472 1.48682 1.75535 2.92904 3.09261 3.20324 3.24871 3.55011 3.86996 4.13540 4.13832 4.47712 4.85686 5.16837 5.20065 5.44553 5.56911 5.61053 5.66963 5.71383 5.82798 5.91417 6.10254 6.31975 6.40733 6.72389 6.76639 6.97392 7.17124 7.36307 7.52149 7.71353 7.88945 8.30479 8.66992 8.98315 9.12568 9.76762 10.55851 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.045327 B = 0.006437 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.585965 B = 4349.120218 C = 4944.751948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.502 5.502 3 C 0.114 3.886 4 C -0.124 4.124 5 C -0.119 4.119 6 C -0.135 4.135 7 C -0.100 4.100 8 C 0.085 3.915 9 N -0.412 5.412 10 C -0.253 4.253 11 C 0.242 3.758 12 C -0.443 4.443 13 H 0.084 0.916 14 C 0.076 3.924 15 N -0.764 5.764 16 Si 0.907 3.093 17 H -0.273 1.273 18 H -0.263 1.263 19 H -0.279 1.279 20 N -0.462 5.462 21 C 0.381 3.619 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.149 0.851 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 11.768 0.633 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.204 5.204 3 C 0.008 3.992 4 C -0.146 4.146 5 C -0.139 4.139 6 C -0.155 4.155 7 C -0.121 4.121 8 C -0.019 4.019 9 N -0.096 5.096 10 C -0.376 4.376 11 C 0.120 3.880 12 C -0.477 4.477 13 H 0.103 0.897 14 C -0.144 4.144 15 N -0.388 5.388 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.187 1.187 19 H -0.204 1.204 20 N -0.194 5.194 21 C 0.035 3.965 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.166 0.834 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.779 10.990 0.587 11.148 hybrid contribution 0.850 -0.381 0.034 0.932 sum -0.929 10.608 0.621 10.667 Atomic orbital electron populations 1.21624 0.75599 1.03522 1.02304 1.42763 1.05030 1.00535 1.72026 1.17976 0.87580 0.88601 1.04997 1.19853 0.99710 0.88276 1.06794 1.20622 0.92017 0.98553 1.02694 1.20639 0.96624 0.94068 1.04207 1.20102 0.97219 0.91757 1.03034 1.17981 0.93938 0.82609 1.07408 1.43037 1.09151 1.02505 1.54933 1.21930 0.95290 0.81947 1.38468 1.18340 0.84330 0.92429 0.92921 1.18515 0.94584 0.87554 1.47078 0.89745 1.25840 0.94595 1.00814 0.93199 1.70089 1.01342 1.34304 1.33099 0.86332 0.79130 0.82348 0.78967 1.19832 1.18707 1.20403 1.71586 1.23768 0.96851 1.27187 1.21345 0.78794 0.88984 1.07402 0.92163 0.89600 0.90880 0.85988 0.85795 0.85876 0.86069 0.83373 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.75 11.13 59.85 0.67 2.41 16 2 N -0.50 -10.48 3.27 -122.33 -0.40 -10.88 16 3 C 0.11 2.18 6.81 -83.83 -0.57 1.60 16 4 C -0.12 -1.80 10.00 -39.43 -0.39 -2.20 16 5 C -0.12 -1.51 10.03 -39.57 -0.40 -1.91 16 6 C -0.13 -1.83 10.03 -39.56 -0.40 -2.22 16 7 C -0.10 -1.69 10.07 -39.44 -0.40 -2.09 16 8 C 0.09 1.80 7.23 -83.69 -0.60 1.19 16 9 N -0.41 -10.38 3.46 -60.35 -0.21 -10.58 16 10 C -0.25 -6.75 12.12 -15.08 -0.18 -6.93 16 11 C 0.24 7.06 6.65 -84.65 -0.56 6.50 16 12 C -0.44 -12.57 9.36 -37.96 -0.36 -12.92 16 13 H 0.08 2.23 7.85 -52.49 -0.41 1.82 16 14 C 0.08 2.04 5.48 -17.36 -0.10 1.95 16 15 N -0.76 -21.64 11.99 55.53 0.67 -20.97 16 16 Si 0.91 19.70 29.56 -169.99 -5.03 14.68 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 18 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 N -0.46 -13.52 9.62 -11.36 -0.11 -13.63 16 21 C 0.38 9.88 9.05 -319.23 -2.89 6.99 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.15 3.57 8.06 -52.49 -0.42 3.15 16 30 H 0.27 6.97 8.30 -40.82 -0.34 6.63 16 LS Contribution 268.06 15.07 4.04 4.04 Total: -1.00 -33.40 268.06 -10.15 -43.55 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -2.93 Total: 1.42 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -6.18 Total: -7.62 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.05 Total: -56.06 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.40 -10.15 -43.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215517805.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.519 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds