Wall clock time and date at job start Mon Mar 30 2020 03:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39156 * 125.89042 * 2 1 4 4 C 1.38826 * 132.80083 * 0.04851 * 3 2 1 5 5 C 1.38067 * 119.89607 * 179.97438 * 4 3 2 6 6 C 1.38445 * 120.27450 * 359.97438 * 5 4 3 7 7 C 1.38076 * 120.26387 * 0.02562 * 6 5 4 8 8 C 1.38771 * 119.89966 * 359.97438 * 7 6 5 9 9 N 1.39485 * 132.74682 * 179.97438 * 8 7 6 10 10 C 1.36638 * 143.70167 * 359.97438 * 9 8 7 11 11 C 1.39126 * 106.49107 * 180.02562 * 10 9 8 12 12 C 1.41118 * 126.32603 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99532 * 6.15936 * 12 11 10 14 14 C 1.39661 * 120.00017 * 186.15488 * 12 11 10 15 15 N 1.31047 * 120.00429 * 6.44733 * 14 12 11 16 16 Si 1.86802 * 120.00011 * 186.44727 * 14 12 11 17 17 H 1.48502 * 109.47238 * 265.01988 * 16 14 12 18 18 H 1.48506 * 109.46890 * 25.01287 * 16 14 12 19 19 H 1.48494 * 109.47440 * 145.01278 * 16 14 12 20 20 N 1.35886 * 107.35470 * 0.26044 * 11 10 9 21 21 C 1.31598 * 109.21280 * 359.56235 * 20 11 10 22 22 H 1.09001 * 109.46987 * 89.99686 * 1 2 3 23 23 H 1.09003 * 109.46780 * 209.99549 * 1 2 3 24 24 H 1.08999 * 109.46929 * 329.99599 * 1 2 3 25 25 H 1.07999 * 120.05437 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.86412 * 180.02562 * 5 4 3 27 27 H 1.08001 * 119.87279 * 180.02562 * 6 5 4 28 28 H 1.07997 * 120.05662 * 180.02562 * 7 6 5 29 29 H 1.07996 * 126.75294 * 0.02562 * 10 9 8 30 30 H 0.96994 * 120.00351 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2808 1.1274 0.0000 4 6 2.0086 2.4887 0.0009 5 6 3.0473 3.3982 0.0011 6 6 4.3601 2.9584 0.0011 7 6 4.6411 1.6066 0.0002 8 6 3.6041 0.6844 0.0000 9 7 3.5772 -0.7101 -0.0013 10 6 4.3647 -1.8268 -0.0031 11 6 3.5022 -2.9184 -0.0039 12 6 3.8760 -4.2791 -0.0062 13 1 4.9158 -4.5536 0.0927 14 6 2.9012 -5.2708 -0.1364 15 7 1.6576 -4.9390 -0.3827 16 14 3.3701 -7.0704 0.0406 17 1 3.6318 -7.6481 -1.3022 18 1 4.5935 -7.1833 0.8749 19 1 2.2582 -7.8102 0.6898 20 7 2.2332 -2.4323 -0.0084 21 6 2.2733 -1.1169 -0.0009 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 0.9859 2.8357 0.0022 26 1 2.8350 4.4571 0.0022 27 1 5.1676 3.6756 0.0017 28 1 5.6664 1.2672 0.0006 29 1 5.4443 -1.8561 -0.0038 30 1 0.9807 -5.6278 -0.4735 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215517805.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:21 Heat of formation + Delta-G solvation = 113.653531 kcal Electronic energy + Delta-G solvation = -16364.435372 eV Core-core repulsion = 13740.192415 eV Total energy + Delta-G solvation = -2624.242957 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.57316 -39.91055 -37.39229 -35.48819 -34.13774 -31.36907 -30.37325 -30.04819 -28.10302 -26.38639 -23.52380 -22.96092 -21.54272 -21.14472 -19.06527 -18.06950 -17.92363 -17.13395 -16.69957 -16.22373 -15.62825 -15.12102 -14.99469 -14.70877 -14.57336 -14.03342 -13.65817 -13.31497 -13.05310 -12.87277 -12.67788 -12.52108 -12.06078 -11.85842 -11.84369 -11.54302 -10.73727 -10.24606 -9.75907 -9.02633 -8.36918 -8.19793 -6.23462 0.16575 0.48262 1.37079 1.39059 1.42161 1.57932 1.75790 2.23528 2.35130 2.49132 2.83904 3.47841 3.58810 3.86810 4.05420 4.14805 4.36795 4.37950 4.44760 4.52493 4.62935 4.75275 4.95378 5.03539 5.19764 5.35761 5.46823 5.57456 5.77595 5.87212 5.97509 6.04097 6.44867 6.76121 7.02402 7.11410 7.81319 8.61489 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.045327 B = 0.006437 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.585965 B = 4349.120218 C = 4944.751948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.505 5.505 3 C 0.099 3.901 4 C -0.116 4.116 5 C -0.092 4.092 6 C -0.118 4.118 7 C -0.111 4.111 8 C 0.027 3.973 9 N -0.423 5.423 10 C -0.267 4.267 11 C 0.203 3.797 12 C -0.484 4.484 13 H 0.088 0.912 14 C 0.027 3.973 15 N -0.808 5.808 16 Si 0.992 3.008 17 H -0.263 1.263 18 H -0.256 1.256 19 H -0.271 1.271 20 N -0.514 5.514 21 C 0.363 3.637 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.120 0.880 25 H 0.162 0.838 26 H 0.178 0.822 27 H 0.167 0.833 28 H 0.123 0.877 29 H 0.160 0.840 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 15.327 0.769 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.208 5.208 3 C -0.005 4.005 4 C -0.138 4.138 5 C -0.111 4.111 6 C -0.138 4.138 7 C -0.132 4.132 8 C -0.074 4.074 9 N -0.106 5.106 10 C -0.391 4.391 11 C 0.079 3.921 12 C -0.518 4.518 13 H 0.106 0.894 14 C -0.189 4.189 15 N -0.434 5.434 16 Si 0.813 3.187 17 H -0.188 1.188 18 H -0.179 1.179 19 H -0.195 1.195 20 N -0.247 5.247 21 C 0.015 3.985 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.138 0.862 25 H 0.179 0.821 26 H 0.196 0.804 27 H 0.184 0.816 28 H 0.141 0.859 29 H 0.177 0.823 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.883 14.670 0.722 14.808 hybrid contribution 0.920 -0.981 -0.013 1.345 sum -0.963 13.689 0.709 13.741 Atomic orbital electron populations 1.21932 0.73146 1.04911 1.03513 1.43157 1.06354 0.99436 1.71835 1.18578 0.86428 0.89829 1.05671 1.20465 1.02557 0.85985 1.04802 1.21349 0.90803 1.00832 0.98100 1.21223 0.98758 0.92815 1.01049 1.20460 0.96642 0.92963 1.03098 1.18706 0.96524 0.81067 1.11129 1.43110 1.08507 1.04130 1.54887 1.22075 0.95787 0.82684 1.38525 1.18835 0.85288 0.93640 0.94289 1.18883 0.95337 0.88361 1.49202 0.89369 1.26849 0.94130 1.05890 0.92045 1.70226 1.02650 1.36121 1.34396 0.85064 0.78993 0.75352 0.79323 1.18758 1.17916 1.19533 1.71393 1.24202 0.99063 1.30066 1.21730 0.80484 0.89466 1.06836 0.91017 0.91494 0.86158 0.82059 0.80431 0.81592 0.85912 0.82310 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.22 11.13 127.77 1.42 4.64 16 2 N -0.50 -21.23 3.27 -540.94 -1.77 -22.99 16 3 C 0.10 3.60 6.81 38.43 0.26 3.87 16 4 C -0.12 -2.78 10.00 22.37 0.22 -2.55 16 5 C -0.09 -1.70 10.03 22.28 0.22 -1.47 16 6 C -0.12 -2.57 10.03 22.28 0.22 -2.34 16 7 C -0.11 -3.56 10.07 22.36 0.23 -3.33 16 8 C 0.03 1.16 7.23 38.37 0.28 1.43 16 9 N -0.42 -22.34 3.46 -344.86 -1.19 -23.53 16 10 C -0.27 -15.24 12.12 84.16 1.02 -14.22 16 11 C 0.20 12.75 6.65 39.44 0.26 13.01 16 12 C -0.48 -29.29 9.36 23.32 0.22 -29.07 16 13 H 0.09 4.98 7.85 -2.91 -0.02 4.96 16 14 C 0.03 1.51 5.48 85.15 0.47 1.98 16 15 N -0.81 -48.50 11.99 21.78 0.26 -48.24 16 16 Si 0.99 42.12 29.56 68.60 2.03 44.15 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 N -0.51 -32.27 9.62 -189.87 -1.83 -34.10 16 21 C 0.36 19.86 9.05 260.24 2.36 22.21 16 22 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 26 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 27 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 28 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.16 8.24 8.06 -2.91 -0.02 8.22 16 30 H 0.28 14.94 8.30 -92.71 -0.77 14.17 16 Total: -1.00 -82.01 268.06 5.84 -76.18 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.15 Total: 14.38 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 7.18 Total: -5.85 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -4.53 Total: -128.86 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -82.01 5.84 -76.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215517805.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.831 kcal (2) G-P(sol) polarization free energy of solvation -82.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds