Wall clock time and date at job start Mon Mar 30 2020 03:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46939 * 2 1 4 4 C 1.50700 * 109.47535 * 239.99506 * 2 1 3 5 5 H 1.07994 * 120.00252 * 240.00579 * 4 2 1 6 6 C 1.37873 * 119.99703 * 59.99955 * 4 2 1 7 7 N 1.31516 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00046 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47299 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47187 * 120.00017 * 8 6 4 11 11 H 1.48503 * 109.47377 * 240.00269 * 8 6 4 12 12 N 1.46903 * 109.47098 * 119.99568 * 2 1 3 13 13 C 1.46898 * 110.99923 * 275.00380 * 12 2 1 14 14 C 1.53009 * 109.46910 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.46727 * 60.00068 * 14 13 12 16 16 O 1.42891 * 109.47159 * 299.99838 * 14 13 12 17 17 C 1.50706 * 109.47028 * 179.97438 * 14 13 12 18 18 C 1.38422 * 122.53644 * 265.00515 * 17 14 13 19 19 C 1.33390 * 114.91870 * 180.02562 * 18 17 14 20 20 S 1.75890 * 109.59395 * 359.97438 * 19 18 17 21 21 C 1.33383 * 122.53751 * 85.02331 * 17 14 13 22 22 H 1.09005 * 109.47181 * 60.00742 * 1 2 3 23 23 H 1.09001 * 109.46939 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47382 * 300.00200 * 1 2 3 25 25 H 0.97003 * 119.99709 * 180.02562 * 7 6 4 26 26 H 1.00893 * 111.00326 * 151.04752 * 12 2 1 27 27 H 1.09002 * 109.47370 * 60.00114 * 13 12 2 28 28 H 1.08997 * 109.47108 * 299.99542 * 13 12 2 29 29 H 0.96694 * 114.00641 * 300.00054 * 16 14 13 30 30 H 1.08000 * 122.54685 * 0.04229 * 18 17 14 31 31 H 1.07998 * 125.20728 * 180.02562 * 19 18 17 32 32 H 1.07996 * 125.20606 * 359.94742 * 21 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1456 -2.2879 -3.6036 10 1 1.1662 -1.5870 -4.8159 11 1 3.1468 -0.1876 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5330 3.5746 15 1 3.5903 -0.9270 3.3692 16 8 1.7078 -1.6124 3.8742 17 6 2.6599 0.4060 4.7516 18 6 3.8186 1.0742 5.1078 19 6 3.7050 1.8666 6.1748 20 16 2.0595 1.7928 6.7918 21 6 1.6053 0.6558 5.5291 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7091 1.1611 -3.4845 26 1 2.9173 -1.1204 1.0289 27 1 1.0869 0.6164 2.5525 28 1 2.7588 1.0463 2.1182 29 1 0.8020 -1.3350 4.0676 30 1 4.7445 0.9628 4.5630 31 1 4.5013 2.4630 6.5951 32 1 0.6226 0.2262 5.4022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219233017.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:06 Heat of formation + Delta-G solvation = -40.448479 kcal Electronic energy + Delta-G solvation = -14943.139436 eV Core-core repulsion = 12415.365315 eV Total energy + Delta-G solvation = -2527.774121 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.14068 -37.73233 -36.65546 -34.40447 -31.55786 -30.33075 -28.19597 -27.27084 -24.86358 -22.78021 -21.76287 -19.83891 -18.93539 -18.64776 -17.52195 -16.89371 -16.25662 -15.99941 -15.29237 -15.01192 -14.75497 -14.36978 -13.85079 -13.64422 -13.49578 -13.22943 -13.11405 -12.85013 -12.61732 -12.31612 -12.24210 -12.19164 -12.00323 -11.70749 -11.01368 -10.80461 -10.58022 -9.73415 -9.29416 -9.03412 -8.13975 -6.28214 0.07111 0.75271 1.04537 1.41479 1.43479 1.55497 1.70524 2.41723 3.14647 3.47157 3.62106 3.98619 4.13004 4.22659 4.30591 4.49693 4.64685 4.74776 4.80149 4.90151 5.06328 5.13540 5.21136 5.41203 5.45879 5.53605 5.66470 5.85084 6.21696 6.45547 6.73527 6.85055 7.00516 7.42501 8.91952 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.047994 B = 0.004554 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.263939 B = 6147.176746 C = 6163.326910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H -0.033 1.033 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.677 5.677 13 C 0.042 3.958 14 C 0.183 3.817 15 H 0.103 0.897 16 O -0.554 6.554 17 C -0.142 4.142 18 C -0.144 4.144 19 C -0.211 4.211 20 S 0.113 5.887 21 C -0.214 4.214 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.021 0.979 25 H 0.263 0.737 26 H 0.332 0.668 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.380 0.620 30 H 0.150 0.850 31 H 0.189 0.811 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 2.082 17.425 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.015 1.015 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.308 5.308 13 C -0.088 4.088 14 C 0.120 3.880 15 H 0.121 0.879 16 O -0.360 6.360 17 C -0.155 4.155 18 C -0.174 4.174 19 C -0.346 4.346 20 S 0.376 5.624 21 C -0.349 4.349 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.229 0.771 30 H 0.168 0.832 31 H 0.206 0.794 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.617 2.301 18.595 18.918 hybrid contribution 1.127 0.123 -2.351 2.610 sum 3.744 2.424 16.243 16.845 Atomic orbital electron populations 1.21525 0.97679 0.98848 0.98948 1.18940 0.92828 0.90629 0.87010 1.01533 1.21624 1.31656 1.12658 0.91626 0.92259 1.25743 0.95148 0.95667 1.02089 1.70035 1.37548 1.24116 1.24129 0.85419 0.78126 0.78594 0.78947 1.19054 1.20576 1.20555 1.60568 1.32324 1.32887 1.04989 1.22577 1.00146 0.94107 0.91963 1.20328 0.94278 0.85170 0.88202 0.87940 1.86566 1.23907 1.33627 1.91908 1.19679 0.94273 1.01867 0.99703 1.20231 0.99533 0.98939 0.98731 1.25929 1.00756 1.06260 1.01660 1.84093 1.05046 1.42585 1.30658 1.25606 1.03500 1.05001 1.00832 0.92564 0.95299 0.95958 0.92829 0.85077 0.91876 0.96083 0.77108 0.83247 0.79399 0.80680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.65 9.19 71.98 0.66 -4.99 16 2 C 0.21 11.11 2.60 44.17 0.11 11.23 16 3 H -0.03 -1.88 7.80 -2.39 -0.02 -1.90 16 4 C -0.54 -29.93 8.59 25.60 0.22 -29.71 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 8 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 N -0.68 -29.07 6.17 -495.43 -3.06 -32.13 16 13 C 0.04 1.50 5.13 86.31 0.44 1.94 16 14 C 0.18 5.25 3.50 29.85 0.10 5.36 16 15 H 0.10 2.92 8.11 -2.39 -0.02 2.90 16 16 O -0.55 -16.55 13.03 -148.98 -1.94 -18.49 16 17 C -0.14 -3.52 4.91 -20.92 -0.10 -3.62 16 18 C -0.14 -3.19 9.96 21.22 0.21 -2.98 16 19 C -0.21 -3.92 11.23 66.72 0.75 -3.17 16 20 S 0.11 2.09 23.34 -56.49 -1.32 0.77 16 21 C -0.21 -4.70 10.43 66.72 0.70 -4.01 16 22 H 0.06 3.12 6.07 -2.38 -0.01 3.10 16 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.33 14.06 8.22 -89.70 -0.74 13.32 16 27 H 0.06 2.25 7.44 -2.39 -0.02 2.23 16 28 H 0.02 0.78 8.05 -2.39 -0.02 0.76 16 29 H 0.38 9.16 7.79 -74.06 -0.58 8.58 16 30 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.18 3.24 7.15 -2.91 -0.02 3.22 16 Total: -1.00 -63.04 283.83 -0.68 -63.72 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -0.18 Total: 22.27 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 3.55 Total: -28.80 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -2.81 Total: -85.24 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.94 Total: -18.49 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.32 Total: 0.77 kcal Total: -63.04 -0.68 -63.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219233017.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.273 kcal (2) G-P(sol) polarization free energy of solvation -63.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds