Wall clock time and date at job start Mon Mar 30 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.09000 * 110.46236 * 59.29706 * 9 7 2 11 11 C 1.54084 * 110.52241 * 181.92835 * 9 7 2 12 12 N 1.47421 * 103.62316 * 118.59413 * 11 9 7 13 13 C 1.46494 * 125.52981 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47118 * 270.10640 * 13 12 11 15 15 H 1.09000 * 109.82335 * 305.56313 * 14 13 12 16 16 C 1.54387 * 109.83166 * 184.58783 * 14 13 12 17 17 C 1.55298 * 102.25275 * 219.12831 * 16 14 13 18 18 C 1.54946 * 100.94560 * 34.13036 * 17 16 14 19 19 O 1.43234 * 109.83185 * 66.45219 * 14 13 12 20 20 C 1.34007 * 108.90953 * 0.11030 * 12 11 9 21 21 O 1.21508 * 123.06935 * 179.88339 * 20 12 11 22 22 O 1.33767 * 113.85444 * 359.92665 * 20 12 11 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.08996 * 110.56599 * 237.20606 * 11 9 7 25 25 H 1.09000 * 110.56868 * 0.05944 * 11 9 7 26 26 H 1.08998 * 109.47179 * 30.10139 * 13 12 11 27 27 H 1.08999 * 109.47511 * 150.10360 * 13 12 11 28 28 H 1.08993 * 110.84587 * 337.31719 * 16 14 13 29 29 H 1.08996 * 110.84576 * 100.93495 * 16 14 13 30 30 H 1.09003 * 111.12616 * 276.21305 * 17 16 14 31 31 H 1.09002 * 111.16289 * 152.06614 * 17 16 14 32 32 H 1.08992 * 110.31555 * 204.63929 * 18 17 16 33 33 H 1.09004 * 110.30618 * 82.46985 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8931 -0.6682 0.8804 11 6 4.0518 -2.6364 -0.0367 12 7 4.8153 -2.6850 -1.2969 13 6 5.5370 -3.8517 -1.8105 14 6 6.9738 -3.8347 -1.2849 15 1 7.4459 -2.8834 -1.5303 16 6 7.7747 -4.9961 -1.9120 17 6 8.6422 -5.4805 -0.7185 18 6 7.6751 -5.2347 0.4669 19 8 6.9742 -4.0256 0.1346 20 6 4.7440 -1.4876 -1.8943 21 8 5.2864 -1.2417 -2.9534 22 8 4.0219 -0.5875 -1.2176 23 1 -0.4850 0.8400 0.0004 24 1 4.7040 -2.8258 0.8159 25 1 3.2303 -3.3525 -0.0580 26 1 5.0392 -4.7624 -1.4776 27 1 5.5483 -3.8214 -2.9000 28 1 7.1075 -5.7876 -2.2531 29 1 8.4026 -4.6381 -2.7279 30 1 9.5456 -4.8787 -0.6197 31 1 8.8863 -6.5386 -0.8133 32 1 8.2362 -5.1046 1.3923 33 1 6.9744 -6.0642 0.5618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220449435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:04 Heat of formation + Delta-G solvation = -116.204550 kcal Electronic energy + Delta-G solvation = -17890.946630 eV Core-core repulsion = 14917.134608 eV Total energy + Delta-G solvation = -2973.812022 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.49998 -39.35808 -36.25914 -34.71597 -32.78025 -32.28085 -30.70917 -29.13950 -26.13029 -24.61400 -22.10986 -21.49127 -21.44344 -19.92192 -17.35434 -17.05063 -16.53048 -16.14135 -15.79916 -15.29296 -14.54794 -14.22570 -14.08696 -13.48425 -13.28227 -13.13480 -12.82423 -12.44896 -11.93636 -11.85257 -11.76197 -11.35736 -11.27684 -11.00126 -10.90096 -10.82208 -10.34891 -9.94399 -9.67972 -9.45930 -9.10526 -8.77830 -8.14451 -6.33065 -4.47542 3.19580 3.28028 3.43450 3.59282 3.66190 3.82270 4.34050 4.35691 4.59202 4.65429 4.74383 5.04922 5.07702 5.16226 5.24743 5.45708 5.49824 5.55067 5.55253 5.58236 5.71988 5.82481 5.95588 6.04556 6.20296 6.52563 6.74406 6.96200 7.19147 7.29435 8.13197 8.42849 8.67155 8.94200 9.27377 10.75792 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.043107 B = 0.006383 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.395668 B = 4385.537880 C = 4599.020714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.092 3.908 3 Si 0.868 3.132 4 H -0.276 1.276 5 H -0.229 1.229 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.087 0.913 9 C 0.158 3.842 10 H 0.073 0.927 11 C 0.092 3.908 12 N -0.631 5.631 13 C 0.142 3.858 14 C 0.061 3.939 15 H 0.084 0.916 16 C -0.148 4.148 17 C -0.156 4.156 18 C 0.048 3.952 19 O -0.371 6.371 20 C 0.638 3.362 21 O -0.566 6.566 22 O -0.333 6.333 23 H 0.271 0.729 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.424 -11.410 0.888 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.116 4.116 3 Si 0.694 3.306 4 H -0.202 1.202 5 H -0.152 1.152 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.105 0.895 9 C 0.105 3.895 10 H 0.091 0.909 11 C -0.031 4.031 12 N -0.378 5.378 13 C 0.019 3.981 14 C 0.002 3.998 15 H 0.102 0.898 16 C -0.186 4.186 17 C -0.193 4.193 18 C -0.029 4.029 19 O -0.290 6.290 20 C 0.395 3.605 21 O -0.456 6.456 22 O -0.243 6.243 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.351 -10.790 0.458 17.961 hybrid contribution 0.299 0.514 -0.030 0.595 sum 14.650 -10.276 0.428 17.900 Atomic orbital electron populations 1.69894 1.06670 1.28112 1.46259 1.25042 0.94785 0.99998 0.91771 0.86957 0.82634 0.82294 0.78726 1.20227 1.15242 1.20882 1.21083 0.86871 0.95544 1.54125 0.89502 1.21948 0.96388 0.88384 0.82798 0.90899 1.22851 0.94907 0.99538 0.85832 1.48001 1.53884 1.11716 1.24205 1.21524 0.90269 0.87163 0.99154 1.23358 0.96135 0.99063 0.81216 0.89770 1.23109 0.98708 0.98073 0.98723 1.23253 0.99013 1.02195 0.94876 1.23379 0.93586 0.87992 0.97915 1.88517 1.76763 1.41830 1.21894 1.18924 0.77901 0.80184 0.83507 1.90865 1.51720 1.81561 1.21429 1.87759 1.61968 1.37001 1.37555 0.91920 0.90543 0.89901 0.90074 0.89105 0.90143 0.89762 0.90469 0.90012 0.89962 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.76 13.96 55.43 0.77 -24.98 16 2 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 3 Si 0.87 21.44 27.06 -169.99 -4.60 16.84 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.23 -5.77 5.48 56.52 0.31 -5.46 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.54 -14.62 9.41 -34.44 -0.32 -14.94 16 8 H 0.09 2.47 7.62 -52.49 -0.40 2.07 16 9 C 0.16 3.69 3.06 -27.31 -0.08 3.60 16 10 H 0.07 1.61 7.56 -51.93 -0.39 1.22 16 11 C 0.09 1.77 7.35 -2.97 -0.02 1.75 16 12 N -0.63 -12.37 2.94 -178.59 -0.53 -12.90 16 13 C 0.14 2.11 5.55 -4.04 -0.02 2.09 16 14 C 0.06 0.81 3.77 -26.00 -0.10 0.72 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.15 -1.37 6.54 -24.79 -0.16 -1.53 16 17 C -0.16 -1.25 7.15 -24.49 -0.18 -1.43 16 18 C 0.05 0.47 7.78 38.18 0.30 0.77 16 19 O -0.37 -5.19 10.72 -35.23 -0.38 -5.57 16 20 C 0.64 15.29 8.85 53.71 0.48 15.77 16 21 O -0.57 -14.57 17.54 -19.11 -0.34 -14.91 16 22 O -0.33 -8.57 8.04 -37.82 -0.30 -8.87 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.08 1.33 7.87 -51.93 -0.41 0.92 16 25 H 0.08 1.57 7.45 -51.93 -0.39 1.18 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.09 1.33 7.93 -51.93 -0.41 0.92 16 28 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 276.48 15.07 4.17 4.17 Total: -1.00 -33.01 276.48 -6.01 -39.02 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.59 Total: -2.07 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.21 Total: 9.26 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.25 Total: -37.88 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.02 Total: -29.34 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.60 Total: 16.84 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.01 -6.01 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220449435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.180 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds