Wall clock time and date at job start Mon Mar 30 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.09000 * 110.46236 * 59.29706 * 9 7 2 11 11 C 1.54084 * 110.52241 * 181.92835 * 9 7 2 12 12 N 1.47421 * 103.62316 * 118.59413 * 11 9 7 13 13 C 1.46494 * 125.52981 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47118 * 270.10640 * 13 12 11 15 15 H 1.09000 * 109.82335 * 305.56313 * 14 13 12 16 16 C 1.54387 * 109.83166 * 184.58783 * 14 13 12 17 17 C 1.55298 * 102.25275 * 219.12831 * 16 14 13 18 18 C 1.54946 * 100.94560 * 34.13036 * 17 16 14 19 19 O 1.43234 * 109.83185 * 66.45219 * 14 13 12 20 20 C 1.34007 * 108.90953 * 0.11030 * 12 11 9 21 21 O 1.21508 * 123.06935 * 179.88339 * 20 12 11 22 22 O 1.33767 * 113.85444 * 359.92665 * 20 12 11 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.08996 * 110.56599 * 237.20606 * 11 9 7 25 25 H 1.09000 * 110.56868 * 0.05944 * 11 9 7 26 26 H 1.08998 * 109.47179 * 30.10139 * 13 12 11 27 27 H 1.08999 * 109.47511 * 150.10360 * 13 12 11 28 28 H 1.08993 * 110.84587 * 337.31719 * 16 14 13 29 29 H 1.08996 * 110.84576 * 100.93495 * 16 14 13 30 30 H 1.09003 * 111.12616 * 276.21305 * 17 16 14 31 31 H 1.09002 * 111.16289 * 152.06614 * 17 16 14 32 32 H 1.08992 * 110.31555 * 204.63929 * 18 17 16 33 33 H 1.09004 * 110.30618 * 82.46985 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8931 -0.6682 0.8804 11 6 4.0518 -2.6364 -0.0367 12 7 4.8153 -2.6850 -1.2969 13 6 5.5370 -3.8517 -1.8105 14 6 6.9738 -3.8347 -1.2849 15 1 7.4459 -2.8834 -1.5303 16 6 7.7747 -4.9961 -1.9120 17 6 8.6422 -5.4805 -0.7185 18 6 7.6751 -5.2347 0.4669 19 8 6.9742 -4.0256 0.1346 20 6 4.7440 -1.4876 -1.8943 21 8 5.2864 -1.2417 -2.9534 22 8 4.0219 -0.5875 -1.2176 23 1 -0.4850 0.8400 0.0004 24 1 4.7040 -2.8258 0.8159 25 1 3.2303 -3.3525 -0.0580 26 1 5.0392 -4.7624 -1.4776 27 1 5.5483 -3.8214 -2.9000 28 1 7.1075 -5.7876 -2.2531 29 1 8.4026 -4.6381 -2.7279 30 1 9.5456 -4.8787 -0.6197 31 1 8.8863 -6.5386 -0.8133 32 1 8.2362 -5.1046 1.3923 33 1 6.9744 -6.0642 0.5618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220449435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:04 Heat of formation + Delta-G solvation = -139.501235 kcal Electronic energy + Delta-G solvation = -17891.956850 eV Core-core repulsion = 14917.134608 eV Total energy + Delta-G solvation = -2974.822242 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.23528 -40.33751 -38.16654 -36.28540 -34.90258 -33.13055 -32.02813 -30.78071 -27.46265 -26.26094 -23.37742 -23.08793 -22.37021 -21.46297 -19.33631 -18.35227 -17.88473 -17.60920 -17.27234 -16.80034 -16.27295 -15.75904 -15.34248 -15.03361 -14.72207 -14.37177 -14.27337 -14.14234 -13.51394 -12.98454 -12.84379 -12.81850 -12.62872 -12.45360 -12.19180 -11.98407 -11.94260 -11.70618 -11.37442 -11.11869 -10.89094 -10.65774 -9.66142 -8.48419 -6.65998 1.31972 1.32595 1.60272 1.79912 1.83526 2.31363 2.67561 2.93550 3.23166 3.60179 3.71413 3.77577 3.90409 3.99000 4.23096 4.31051 4.38367 4.47704 4.65492 4.68580 4.82952 4.86252 4.94337 4.97149 5.01925 5.11401 5.28032 5.32621 5.56818 5.99314 6.14081 6.46215 6.64642 7.10962 7.15220 8.63906 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.043107 B = 0.006383 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.395668 B = 4385.537880 C = 4599.020714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.043 3.957 3 Si 0.926 3.074 4 H -0.255 1.255 5 H -0.238 1.238 6 H -0.285 1.285 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.152 3.848 10 H 0.090 0.910 11 C 0.102 3.898 12 N -0.619 5.619 13 C 0.132 3.868 14 C 0.064 3.936 15 H 0.056 0.944 16 C -0.142 4.142 17 C -0.147 4.147 18 C 0.038 3.962 19 O -0.398 6.398 20 C 0.628 3.372 21 O -0.593 6.593 22 O -0.358 6.358 23 H 0.274 0.726 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.241 -12.845 1.447 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.749 3.251 4 H -0.180 1.180 5 H -0.162 1.162 6 H -0.211 1.211 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.099 3.901 10 H 0.108 0.892 11 C -0.020 4.020 12 N -0.366 5.366 13 C 0.012 3.988 14 C 0.005 3.995 15 H 0.074 0.926 16 C -0.180 4.180 17 C -0.184 4.184 18 C -0.038 4.038 19 O -0.318 6.318 20 C 0.384 3.616 21 O -0.485 6.485 22 O -0.269 6.269 23 H 0.083 0.917 24 H 0.123 0.877 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.185 -12.272 1.044 20.338 hybrid contribution -0.258 0.854 -0.197 0.913 sum 15.927 -11.418 0.847 19.615 Atomic orbital electron populations 1.69989 1.08068 1.29037 1.48309 1.25808 0.95395 1.03195 0.91690 0.86064 0.80713 0.78676 0.79606 1.17966 1.16191 1.21121 1.21310 0.88992 0.94511 1.53210 0.91911 1.22026 0.94310 0.91208 0.82541 0.89211 1.22803 0.95511 0.97027 0.86663 1.48155 1.53296 1.11455 1.23647 1.21959 0.91305 0.86161 0.99402 1.23199 0.95045 0.99562 0.81714 0.92644 1.23115 0.98769 0.96884 0.99197 1.23247 0.98246 1.03782 0.93153 1.23639 0.94184 0.86931 0.98999 1.88476 1.77483 1.43866 1.21977 1.19095 0.77947 0.81148 0.83449 1.90828 1.52879 1.82231 1.22555 1.87666 1.62561 1.38329 1.38312 0.91650 0.87701 0.89313 0.87338 0.89030 0.88352 0.89046 0.90521 0.87369 0.89090 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.83 13.96 21.45 0.30 -54.53 16 2 C 0.04 2.40 5.47 84.65 0.46 2.87 16 3 Si 0.93 44.37 27.06 68.60 1.86 46.22 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.24 -11.71 5.48 99.48 0.55 -11.16 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.54 -29.56 9.41 25.60 0.24 -29.32 16 8 H 0.06 3.63 7.62 -2.91 -0.02 3.61 16 9 C 0.15 6.97 3.06 30.22 0.09 7.06 16 10 H 0.09 3.81 7.56 -2.39 -0.02 3.79 16 11 C 0.10 3.78 7.35 86.57 0.64 4.42 16 12 N -0.62 -23.47 2.94 -950.65 -2.80 -26.27 16 13 C 0.13 3.68 5.55 86.38 0.48 4.16 16 14 C 0.06 1.58 3.77 31.07 0.12 1.69 16 15 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 16 C -0.14 -2.20 6.54 31.85 0.21 -1.99 16 17 C -0.15 -1.85 7.15 32.05 0.23 -1.62 16 18 C 0.04 0.63 7.78 72.65 0.57 1.20 16 19 O -0.40 -10.22 10.72 -148.98 -1.60 -11.82 16 20 C 0.63 29.89 8.85 129.91 1.15 31.04 16 21 O -0.59 -30.66 17.54 19.66 0.34 -30.32 16 22 O -0.36 -18.33 8.04 -47.27 -0.38 -18.71 16 23 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 24 H 0.10 3.34 7.87 -2.39 -0.02 3.32 16 25 H 0.09 3.21 7.45 -2.39 -0.02 3.19 16 26 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.09 2.55 7.93 -2.39 -0.02 2.53 16 28 H 0.10 1.19 7.85 -2.39 -0.02 1.17 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -71.78 276.48 2.84 -68.94 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.94 Total: 6.97 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 4.18 Total: 19.51 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -2.50 Total: -80.80 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -1.63 Total: -60.84 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.86 Total: 46.22 kcal Total: -71.78 2.84 -68.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220449435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.563 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds