Wall clock time and date at job start Mon Mar 30 2020 03:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00108 * 2 1 4 4 H 1.48498 * 109.47131 * 269.99463 * 3 2 1 5 5 H 1.48504 * 109.47413 * 29.99781 * 3 2 1 6 6 H 1.48502 * 109.47244 * 149.99621 * 3 2 1 7 7 C 1.37871 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00103 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00154 * 180.02562 * 7 2 1 10 10 H 1.09005 * 110.46429 * 298.82502 * 9 7 2 11 11 C 1.54088 * 110.52487 * 176.04186 * 9 7 2 12 12 N 1.47090 * 103.77752 * 241.37022 * 11 9 7 13 13 C 1.46499 * 125.55710 * 180.26341 * 12 11 9 14 14 C 1.52999 * 109.47238 * 269.71605 * 13 12 11 15 15 H 1.09000 * 110.33035 * 307.25205 * 14 13 12 16 16 C 1.54478 * 110.37307 * 185.00217 * 14 13 12 17 17 C 1.54511 * 104.06178 * 217.19090 * 16 14 13 18 18 C 1.54475 * 104.06335 * 359.97438 * 17 16 14 19 19 O 1.44421 * 110.37185 * 69.62114 * 14 13 12 20 20 C 1.34004 * 108.88052 * 359.97438 * 12 11 9 21 21 O 1.21514 * 123.06618 * 180.02562 * 20 12 11 22 22 O 1.33762 * 113.85830 * 0.02562 * 20 12 11 23 23 H 0.97008 * 119.99809 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.56560 * 122.79423 * 11 9 7 25 25 H 1.09006 * 110.56234 * 359.94666 * 11 9 7 26 26 H 1.09000 * 109.47162 * 29.72095 * 13 12 11 27 27 H 1.09003 * 109.47099 * 149.71682 * 13 12 11 28 28 H 1.09006 * 110.51338 * 335.83394 * 16 14 13 29 29 H 1.09003 * 110.51312 * 98.54708 * 16 14 13 30 30 H 1.08995 * 110.51298 * 118.64621 * 17 16 14 31 31 H 1.09002 * 110.51088 * 241.35381 * 17 16 14 32 32 H 1.09001 * 110.37272 * 142.80949 * 18 17 16 33 33 H 1.09004 * 110.37101 * 265.03631 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8930 -0.7020 -0.8936 11 6 4.0516 -2.6338 0.1013 12 7 4.8150 -2.6348 1.3586 13 6 5.5401 -3.7802 1.9140 14 6 4.6101 -4.5763 2.8317 15 1 4.1566 -3.9190 3.5736 16 6 5.3870 -5.7164 3.5266 17 6 4.3770 -6.8847 3.5736 18 6 3.1091 -6.3120 2.9021 19 8 3.5899 -5.2435 2.0573 20 6 4.7443 -1.4155 1.9098 21 8 5.2866 -1.1298 2.9590 22 8 4.0222 -0.5417 1.1997 23 1 -0.4850 0.8401 0.0004 24 1 4.7039 -2.8576 -0.7429 25 1 3.2300 -3.3483 0.1515 26 1 5.8847 -4.4205 1.1020 27 1 6.3977 -3.4250 2.4854 28 1 6.2640 -5.9931 2.9413 29 1 5.6771 -5.4216 4.5351 30 1 4.7546 -7.7389 3.0116 31 1 4.1677 -7.1675 4.6053 32 1 2.6186 -7.0783 2.3018 33 1 2.4232 -5.9241 3.6552 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220449570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:07 Heat of formation + Delta-G solvation = -115.167598 kcal Electronic energy + Delta-G solvation = -17976.047276 eV Core-core repulsion = 15002.280219 eV Total energy + Delta-G solvation = -2973.767057 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.50921 -39.20110 -36.28417 -34.77422 -32.76225 -32.11277 -30.67939 -29.11866 -26.02531 -24.58756 -22.30014 -21.50843 -21.03831 -20.07159 -17.40618 -16.80802 -16.33065 -15.88740 -15.65348 -15.22372 -15.14902 -14.34261 -13.95533 -13.68652 -13.18249 -12.96124 -12.59033 -12.25657 -12.06380 -11.86611 -11.72446 -11.34407 -11.14854 -10.88325 -10.80365 -10.70774 -10.36305 -9.94313 -9.68950 -9.41951 -9.11915 -8.75971 -8.22044 -6.31121 -4.45076 3.17743 3.28008 3.44409 3.59385 3.64393 3.99176 4.36578 4.54940 4.59343 4.71760 4.88277 5.10109 5.12414 5.24147 5.32637 5.45993 5.52886 5.59543 5.67431 5.72468 5.78567 5.84525 5.93391 6.05479 6.26477 6.48766 6.76062 6.91544 7.14706 7.29435 8.15479 8.40679 8.70835 8.91415 9.29020 10.77785 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.033595 B = 0.007271 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.258282 B = 3850.246422 C = 4324.599217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.091 3.909 3 Si 0.867 3.133 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.226 1.226 7 C -0.539 4.539 8 H 0.089 0.911 9 C 0.158 3.842 10 H 0.073 0.927 11 C 0.090 3.910 12 N -0.633 5.633 13 C 0.158 3.842 14 C 0.055 3.945 15 H 0.074 0.926 16 C -0.148 4.148 17 C -0.154 4.154 18 C 0.043 3.957 19 O -0.361 6.361 20 C 0.637 3.363 21 O -0.565 6.565 22 O -0.332 6.332 23 H 0.271 0.729 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.570 -12.215 2.793 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.117 4.117 3 Si 0.693 3.307 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.150 1.150 7 C -0.575 4.575 8 H 0.107 0.893 9 C 0.105 3.895 10 H 0.091 0.909 11 C -0.033 4.033 12 N -0.380 5.380 13 C 0.036 3.964 14 C -0.004 4.004 15 H 0.092 0.908 16 C -0.186 4.186 17 C -0.191 4.191 18 C -0.034 4.034 19 O -0.280 6.280 20 C 0.394 3.606 21 O -0.455 6.455 22 O -0.242 6.242 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.546 -11.650 3.121 15.382 hybrid contribution 0.152 0.571 0.182 0.618 sum 9.698 -11.080 3.303 15.091 Atomic orbital electron populations 1.69903 1.06665 1.28028 1.46347 1.25043 0.94790 0.99957 0.91880 0.87000 0.82734 0.82342 0.78658 1.20318 1.20927 1.14953 1.21089 0.86817 0.95606 1.53965 0.89348 1.21972 0.96599 0.87532 0.83414 0.90915 1.22821 0.95520 1.00064 0.84929 1.47988 1.54200 1.10646 1.25156 1.21187 0.92902 0.85428 0.96928 1.23589 0.89184 0.93937 0.93711 0.90772 1.22928 0.99060 0.95000 1.01626 1.22927 0.96089 0.98602 1.01531 1.23383 0.95738 0.90026 0.94258 1.89219 1.54669 1.45501 1.38580 1.18975 0.77932 0.80234 0.83469 1.90870 1.51604 1.81089 1.21926 1.87807 1.61848 1.36887 1.37622 0.91975 0.91475 0.88914 0.89696 0.88786 0.90479 0.90364 0.90784 0.90744 0.89236 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.96 55.43 0.77 -25.12 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 3 Si 0.87 21.37 27.09 -169.99 -4.61 16.77 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.23 -5.66 5.36 56.52 0.30 -5.36 16 7 C -0.54 -14.66 9.41 -34.44 -0.32 -14.98 16 8 H 0.09 2.56 7.63 -52.49 -0.40 2.16 16 9 C 0.16 3.65 3.08 -27.31 -0.08 3.57 16 10 H 0.07 1.56 7.67 -51.93 -0.40 1.16 16 11 C 0.09 1.72 7.33 -3.15 -0.02 1.70 16 12 N -0.63 -12.31 2.96 -178.85 -0.53 -12.84 16 13 C 0.16 2.36 5.62 -4.04 -0.02 2.33 16 14 C 0.05 0.80 3.53 -25.96 -0.09 0.71 16 15 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.15 -1.54 6.63 -25.16 -0.17 -1.71 16 17 C -0.15 -1.46 7.09 -25.16 -0.18 -1.63 16 18 C 0.04 0.52 7.63 37.93 0.29 0.81 16 19 O -0.36 -5.74 11.31 -35.23 -0.40 -6.14 16 20 C 0.64 15.11 8.85 53.71 0.48 15.59 16 21 O -0.57 -14.42 17.55 -19.12 -0.34 -14.76 16 22 O -0.33 -8.44 7.81 -37.81 -0.30 -8.74 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.09 1.87 7.42 -51.93 -0.39 1.48 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 28 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 276.84 15.07 4.17 4.17 Total: -1.00 -33.10 276.84 -6.06 -39.17 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.62 Total: -1.36 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -0.22 Total: 8.84 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.24 Total: -37.95 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -1.03 Total: -29.64 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.61 Total: 16.77 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.10 -6.06 -39.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220449570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.002 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds