Wall clock time and date at job start Mon Mar 30 2020 03:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38001 * 119.97329 * 2 1 4 4 C 1.38573 * 120.44158 * 180.02562 * 3 2 1 5 5 C 1.37870 * 120.36847 * 0.23250 * 4 3 2 6 6 C 1.39653 * 119.93238 * 359.49345 * 5 4 3 7 7 C 1.43201 * 120.21220 * 180.27614 * 6 5 4 8 8 N 4.81731 * 134.98659 * 179.97438 * 2 1 3 9 9 C 1.38997 * 119.96810 * 179.97438 * 2 1 3 10 10 N 1.38708 * 120.19027 * 0.04437 * 9 2 1 11 11 C 1.36793 * 119.99741 * 89.99637 * 10 9 2 12 12 H 1.08000 * 119.99520 * 174.99047 * 11 10 9 13 13 C 1.38847 * 120.00516 * 354.99256 * 11 10 9 14 14 N 1.31547 * 119.99774 * 5.31087 * 13 11 10 15 15 Si 1.86794 * 120.00417 * 185.31254 * 13 11 10 16 16 H 1.48503 * 109.47013 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47363 * 119.99694 * 15 13 11 18 18 H 1.48500 * 109.47032 * 240.00215 * 15 13 11 19 19 C 1.46498 * 119.99824 * 269.99955 * 10 9 2 20 20 C 1.47193 * 109.47340 * 96.20342 * 19 10 9 21 21 N 4.15270 * 47.36678 * 141.85639 * 2 1 3 22 22 H 1.08996 * 109.47153 * 90.00607 * 1 2 3 23 23 H 1.09007 * 109.47014 * 210.00004 * 1 2 3 24 24 H 1.09000 * 109.46845 * 329.99476 * 1 2 3 25 25 H 1.08005 * 119.78256 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.81559 * 179.97438 * 4 3 2 27 27 H 1.08001 * 120.02897 * 179.74379 * 5 4 3 28 28 H 0.96996 * 120.00186 * 179.97438 * 14 13 11 29 29 H 1.09001 * 109.46517 * 216.19980 * 19 10 9 30 30 H 1.08998 * 109.47208 * 336.19504 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1954 0.0000 4 6 3.5822 1.2068 -0.0005 5 6 4.2889 0.0230 -0.0059 6 6 3.6069 -1.1957 -0.0001 7 6 4.3350 -2.4288 0.0003 8 7 4.9126 -3.4071 0.0015 9 6 2.2013 -1.2041 0.0005 10 7 1.5111 -2.4073 0.0001 11 6 1.1715 -3.0006 -1.1847 12 1 0.7065 -3.9753 -1.1867 13 6 1.4247 -2.3497 -2.3848 14 7 2.0843 -1.2116 -2.3893 15 14 0.8286 -3.0900 -3.9928 16 1 0.1185 -4.3649 -3.7176 17 1 -0.0976 -2.1413 -4.6614 18 1 1.9917 -3.3530 -4.8779 19 6 1.1458 -3.0426 1.2687 20 6 -0.2378 -2.6815 1.6177 21 7 -1.3056 -2.4028 1.8870 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6525 2.1285 -0.0004 26 1 4.1115 2.1482 -0.0009 27 1 5.3688 0.0382 -0.0105 28 1 2.2615 -0.7570 -3.2276 29 1 1.2246 -4.1251 1.1687 30 1 1.8199 -2.7002 2.0539 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220989648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:27 Heat of formation + Delta-G solvation = 101.155391 kcal Electronic energy + Delta-G solvation = -16959.023224 eV Core-core repulsion = 14334.238307 eV Total energy + Delta-G solvation = -2624.784917 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58007 -37.87560 -37.01201 -36.50207 -33.45767 -33.19596 -31.07113 -28.63000 -27.59175 -25.50706 -23.76076 -21.92629 -19.46452 -18.91534 -18.30724 -17.25365 -16.41432 -16.15226 -15.65828 -15.35825 -14.65642 -14.52610 -14.39459 -13.94110 -13.86991 -13.70697 -13.52828 -13.42672 -13.05517 -12.89313 -12.68898 -12.40076 -12.23310 -12.11130 -12.04022 -11.88623 -11.58935 -10.96027 -9.30029 -9.24605 -9.10594 -7.62446 -5.38189 0.42279 1.00611 1.45018 1.50432 1.54704 1.85540 2.00333 2.09723 2.42978 2.51397 3.20594 3.29823 3.45333 3.53514 3.68501 4.37777 4.43447 4.51633 4.69733 4.74469 4.88571 4.94763 5.06306 5.22605 5.30890 5.60052 5.62768 5.83001 5.91972 6.09378 6.17693 6.44710 6.77472 6.94171 7.17913 7.70327 8.02202 9.12192 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.013438 C = 0.011115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.848584 B = 2083.140084 C = 2518.439485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.096 4.096 3 C -0.091 4.091 4 C -0.142 4.142 5 C -0.074 4.074 6 C -0.068 4.068 7 C 0.303 3.697 8 N -0.497 5.497 9 C 0.327 3.673 10 N -0.566 5.566 11 C -0.275 4.275 12 H 0.086 0.914 13 C -0.024 4.024 14 N -0.891 5.891 15 Si 0.953 3.047 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.299 1.299 19 C 0.228 3.772 20 C 0.221 3.779 21 N -0.495 5.495 22 H 0.039 0.961 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.129 0.871 26 H 0.148 0.852 27 H 0.132 0.868 28 H 0.254 0.746 29 H 0.119 0.881 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 5.148 5.611 7.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.110 4.110 4 C -0.160 4.160 5 C -0.095 4.095 6 C -0.074 4.074 7 C -0.010 4.010 8 N -0.174 5.174 9 C 0.229 3.771 10 N -0.283 5.283 11 C -0.403 4.403 12 H 0.104 0.896 13 C -0.222 4.222 14 N -0.534 5.534 15 Si 0.783 3.217 16 H -0.200 1.200 17 H -0.220 1.220 18 H -0.226 1.226 19 C 0.099 3.901 20 C -0.098 4.098 21 N -0.176 5.176 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.147 0.853 26 H 0.165 0.835 27 H 0.150 0.850 28 H 0.066 0.934 29 H 0.136 0.864 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.646 4.078 5.815 7.291 hybrid contribution -0.365 -0.220 -1.715 1.767 sum 1.281 3.858 4.101 5.774 Atomic orbital electron populations 1.20589 0.92569 1.01585 1.00425 1.20047 0.95398 0.93168 1.01183 1.21095 0.94791 0.96717 0.98434 1.20920 0.93566 0.97768 1.03749 1.20961 0.99568 0.90568 0.98381 1.16634 0.92137 0.86879 1.11772 1.25923 0.91232 0.92696 0.91112 1.81015 1.12156 1.11466 1.12810 1.16700 0.87414 0.85721 0.87245 1.41412 1.62807 1.22056 1.02009 1.19484 1.36539 1.01376 0.82898 0.89597 1.25293 0.99799 0.97300 0.99802 1.69765 1.41860 1.16540 1.25233 0.85415 0.77157 0.77860 0.81278 1.19961 1.22046 1.22597 1.18977 0.82852 1.00222 0.88088 1.31419 0.96459 0.91238 0.90705 1.81037 1.14166 1.11081 1.11285 0.94266 0.92272 0.92025 0.85287 0.83478 0.85021 0.93423 0.86382 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.60 9.77 71.24 0.70 -2.90 16 2 C -0.10 -3.59 4.80 -19.74 -0.09 -3.68 16 3 C -0.09 -2.87 9.68 22.29 0.22 -2.65 16 4 C -0.14 -4.03 10.02 22.26 0.22 -3.81 16 5 C -0.07 -2.34 9.75 22.52 0.22 -2.12 16 6 C -0.07 -2.59 5.04 -21.12 -0.11 -2.69 16 7 C 0.30 12.40 14.82 88.33 1.31 13.71 16 8 N -0.50 -21.41 18.54 19.01 0.35 -21.06 16 9 C 0.33 12.99 2.79 38.80 0.11 13.10 16 10 N -0.57 -22.98 1.19 -520.93 -0.62 -23.60 16 11 C -0.28 -12.80 9.76 84.07 0.82 -11.98 16 12 H 0.09 3.96 7.83 -2.91 -0.02 3.94 16 13 C -0.02 -1.15 5.44 84.88 0.46 -0.69 16 14 N -0.89 -43.65 9.35 21.65 0.20 -43.45 16 15 Si 0.95 42.04 29.56 68.60 2.03 44.07 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 19 C 0.23 7.26 6.15 84.57 0.52 7.78 16 20 C 0.22 7.67 13.17 89.44 1.18 8.85 16 21 N -0.50 -19.00 17.85 20.00 0.36 -18.65 16 22 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 2.33 3.67 -2.38 -0.01 2.33 16 24 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 25 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 26 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.25 12.60 8.31 -92.71 -0.77 11.83 16 29 H 0.12 3.36 8.09 -2.39 -0.02 3.34 16 30 H 0.12 3.23 8.00 -2.39 -0.02 3.21 16 Total: -1.00 -57.10 275.28 9.04 -48.06 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 1.17 Total: 1.73 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.55 Total: 12.91 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: 0.29 Total: -106.76 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -57.10 9.04 -48.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220989648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.215 kcal (2) G-P(sol) polarization free energy of solvation -57.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds