Wall clock time and date at job start Mon Mar 30 2020 03:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46496 * 109.46995 * 239.99963 * 2 1 3 5 5 C 1.46503 * 120.00249 * 60.00308 * 4 2 1 6 6 C 1.50700 * 109.46793 * 89.99529 * 5 4 2 7 7 H 1.07994 * 120.00291 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99539 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99883 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99863 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47114 * 90.00222 * 10 8 6 12 12 H 1.48510 * 109.46712 * 209.99790 * 10 8 6 13 13 H 1.48493 * 109.47474 * 329.99643 * 10 8 6 14 14 C 1.38939 * 120.00009 * 239.99968 * 4 2 1 15 15 N 1.29690 * 125.38442 * 0.02947 * 14 4 2 16 16 C 1.32342 * 116.97884 * 179.97438 * 15 14 4 17 17 C 1.33773 * 115.60085 * 359.97438 * 16 15 14 18 18 N 1.40041 * 125.87807 * 180.02562 * 17 16 15 19 19 S 1.76130 * 125.38543 * 179.72110 * 14 4 2 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 24 24 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 25 25 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 27 27 H 1.08998 * 109.47196 * 209.99887 * 5 4 2 28 28 H 1.09000 * 109.46808 * 330.00267 * 5 4 2 29 29 H 0.96998 * 120.00239 * 180.02562 * 9 8 6 30 30 H 1.07999 * 122.19680 * 179.97438 * 16 15 14 31 31 H 0.97003 * 119.99697 * 359.97438 * 18 17 16 32 32 H 0.96992 * 120.00024 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6645 -0.1901 -2.5268 6 6 2.7033 0.8019 -2.9829 7 1 3.5432 1.0357 -2.3456 8 6 2.5818 1.4100 -4.2144 9 7 3.4886 2.2753 -4.6127 10 14 1.1293 1.0049 -5.3169 11 1 0.0104 1.9363 -5.0237 12 1 1.5325 1.1477 -6.7391 13 1 0.6905 -0.3910 -5.0646 14 6 2.8171 -1.8202 -1.0687 15 7 3.1924 -2.3519 0.0531 16 6 3.9550 -3.4311 -0.0194 17 6 4.2498 -3.8486 -1.2557 18 7 5.0354 -4.9614 -1.5807 19 16 3.4738 -2.7611 -2.4050 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1301 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6239 -1.0226 -3.2291 28 1 0.6905 0.2975 -2.4843 29 1 3.4030 2.7035 -5.4788 30 1 4.3156 -3.9412 0.8616 31 1 5.4202 -5.5058 -0.8761 32 1 5.1947 -5.1878 -2.5103 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226736404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:48 Heat of formation + Delta-G solvation = 50.045645 kcal Electronic energy + Delta-G solvation = -15459.490846 eV Core-core repulsion = 12967.933596 eV Total energy + Delta-G solvation = -2491.557251 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.82126 -37.01012 -34.01283 -32.82215 -31.32186 -28.48445 -26.61905 -26.21853 -23.43724 -22.40241 -20.53626 -18.42150 -17.94732 -16.94230 -16.64480 -15.26463 -14.62234 -14.49866 -14.28907 -13.81308 -13.28547 -13.14368 -12.80893 -12.49761 -11.90252 -11.64953 -11.60298 -11.23745 -10.92818 -10.74138 -10.63297 -10.43510 -10.16027 -10.11986 -9.49786 -8.84441 -8.67964 -8.52320 -8.05920 -6.23477 -6.15616 -4.16120 1.67264 1.92804 2.36640 3.19578 3.27812 3.29375 3.71349 3.79917 4.30426 4.34129 5.12005 5.36347 5.49857 5.69522 5.84808 6.02276 6.13911 6.22449 6.31814 6.41118 6.52780 6.63319 6.75216 6.84376 7.11213 7.46411 7.50424 7.69104 7.90914 8.10497 8.40820 8.76704 8.92890 9.42866 10.96366 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.009681 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.589568 B = 2891.673823 C = 3689.428051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 C -0.155 4.155 4 N -0.555 5.555 5 C 0.222 3.778 6 C -0.532 4.532 7 H 0.082 0.918 8 C 0.076 3.924 9 N -0.891 5.891 10 Si 0.864 3.136 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.355 3.645 15 N -0.544 5.544 16 C -0.026 4.026 17 C 0.010 3.990 18 N -0.855 5.855 19 S 0.056 5.944 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.090 0.910 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.153 0.847 31 H 0.397 0.603 32 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.417 -9.548 5.836 11.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 C -0.213 4.213 4 N -0.273 5.273 5 C 0.101 3.899 6 C -0.571 4.571 7 H 0.100 0.900 8 C -0.127 4.127 9 N -0.528 5.528 10 Si 0.691 3.309 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.189 1.189 14 C -0.019 4.019 15 N -0.271 5.271 16 C -0.178 4.178 17 C -0.212 4.212 18 N -0.403 5.403 19 S 0.299 5.701 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.108 0.892 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.170 0.830 31 H 0.227 0.773 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.720 -8.942 5.080 10.638 hybrid contribution -0.042 -0.785 -0.168 0.804 sum -2.762 -9.727 4.912 11.241 Atomic orbital electron populations 1.22186 0.96155 1.01602 1.01993 1.20892 0.92928 0.93361 0.87768 1.22150 1.01822 0.95539 1.01833 1.46333 1.49817 1.23650 1.07515 1.19760 0.97039 0.95023 0.78067 1.21423 1.09558 1.23081 1.03037 0.89979 1.24846 0.95883 0.94615 0.97328 1.69886 1.34407 1.27759 1.20786 0.87024 0.83450 0.79621 0.80812 1.19890 1.20816 1.18864 1.23831 0.96034 0.93064 0.88930 1.66345 1.21368 1.13867 1.25530 1.20598 1.04854 0.97179 0.95122 1.22865 1.05021 0.97438 0.95916 1.41191 1.59494 1.30154 1.09490 1.85248 1.52076 1.23592 1.09211 0.92072 0.92917 0.92062 0.89210 0.93325 0.92515 0.90490 0.95586 0.94495 0.92465 0.83007 0.77305 0.77635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.17 37.16 0.34 -2.15 16 2 C 0.16 2.86 3.33 -67.93 -0.23 2.63 16 3 C -0.16 -2.85 8.47 37.16 0.31 -2.54 16 4 N -0.56 -11.70 2.50 -168.05 -0.42 -12.12 16 5 C 0.22 5.07 3.68 -5.19 -0.02 5.06 16 6 C -0.53 -14.14 8.38 -34.44 -0.29 -14.43 16 7 H 0.08 2.45 7.87 -52.49 -0.41 2.04 16 8 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 9 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 10 Si 0.86 20.17 27.47 -169.99 -4.67 15.50 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.26 -5.90 6.54 56.52 0.37 -5.54 16 14 C 0.35 7.47 7.95 -87.36 -0.69 6.78 16 15 N -0.54 -10.98 9.59 -13.69 -0.13 -11.11 16 16 C -0.03 -0.46 11.29 -18.90 -0.21 -0.67 16 17 C 0.01 0.17 7.74 -15.36 -0.12 0.05 16 18 N -0.86 -10.52 9.16 31.80 0.29 -10.23 16 19 S 0.06 1.09 22.05 -107.50 -2.37 -1.28 16 20 H 0.06 0.98 6.66 -51.93 -0.35 0.63 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.09 1.65 7.15 -51.93 -0.37 1.28 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 27 H 0.03 0.61 6.16 -51.93 -0.32 0.29 16 28 H 0.04 0.81 5.85 -51.93 -0.30 0.51 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.40 3.84 8.95 -40.82 -0.37 3.47 16 32 H 0.40 4.30 8.96 -40.82 -0.37 3.93 16 LS Contribution 278.42 15.07 4.20 4.20 Total: -1.00 -29.84 278.42 -7.46 -37.30 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.13 Total: 6.38 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.00 Total: -3.28 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.51 Total: -58.81 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.37 Total: -1.28 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.84 -7.46 -37.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226736404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.343 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds