Wall clock time and date at job start Mon Mar 30 2020 03:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46496 * 109.46995 * 239.99963 * 2 1 3 5 5 C 1.46503 * 120.00249 * 60.00308 * 4 2 1 6 6 C 1.50700 * 109.46793 * 89.99529 * 5 4 2 7 7 H 1.07994 * 120.00291 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99539 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99883 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99863 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47114 * 90.00222 * 10 8 6 12 12 H 1.48510 * 109.46712 * 209.99790 * 10 8 6 13 13 H 1.48493 * 109.47474 * 329.99643 * 10 8 6 14 14 C 1.38939 * 120.00009 * 239.99968 * 4 2 1 15 15 N 1.29690 * 125.38442 * 0.02947 * 14 4 2 16 16 C 1.32342 * 116.97884 * 179.97438 * 15 14 4 17 17 C 1.33773 * 115.60085 * 359.97438 * 16 15 14 18 18 N 1.40041 * 125.87807 * 180.02562 * 17 16 15 19 19 S 1.76130 * 125.38543 * 179.72110 * 14 4 2 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 24 24 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 25 25 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 27 27 H 1.08998 * 109.47196 * 209.99887 * 5 4 2 28 28 H 1.09000 * 109.46808 * 330.00267 * 5 4 2 29 29 H 0.96998 * 120.00239 * 180.02562 * 9 8 6 30 30 H 1.07999 * 122.19680 * 179.97438 * 16 15 14 31 31 H 0.97003 * 119.99697 * 359.97438 * 18 17 16 32 32 H 0.96992 * 120.00024 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6645 -0.1901 -2.5268 6 6 2.7033 0.8019 -2.9829 7 1 3.5432 1.0357 -2.3456 8 6 2.5818 1.4100 -4.2144 9 7 3.4886 2.2753 -4.6127 10 14 1.1293 1.0049 -5.3169 11 1 0.0104 1.9363 -5.0237 12 1 1.5325 1.1477 -6.7391 13 1 0.6905 -0.3910 -5.0646 14 6 2.8171 -1.8202 -1.0687 15 7 3.1924 -2.3519 0.0531 16 6 3.9550 -3.4311 -0.0194 17 6 4.2498 -3.8486 -1.2557 18 7 5.0354 -4.9614 -1.5807 19 16 3.4738 -2.7611 -2.4050 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1301 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6239 -1.0226 -3.2291 28 1 0.6905 0.2975 -2.4843 29 1 3.4030 2.7035 -5.4788 30 1 4.3156 -3.9412 0.8616 31 1 5.4202 -5.5058 -0.8761 32 1 5.1947 -5.1878 -2.5103 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226736404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:48 Heat of formation + Delta-G solvation = 29.928119 kcal Electronic energy + Delta-G solvation = -15460.363208 eV Core-core repulsion = 12967.933596 eV Total energy + Delta-G solvation = -2492.429612 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29477 -38.51545 -35.29520 -34.79697 -32.90394 -30.23179 -28.01570 -27.71515 -24.97514 -24.17984 -22.00410 -19.89057 -19.37113 -18.99661 -18.04814 -16.73146 -16.24095 -15.93155 -15.81403 -15.41451 -14.82913 -14.63161 -14.38540 -14.18065 -13.67052 -13.28724 -12.92968 -12.74469 -12.59093 -12.36080 -12.03777 -11.98475 -11.87790 -11.66590 -11.45989 -10.76405 -10.36750 -10.07072 -9.50114 -8.26765 -7.64599 -6.30961 0.20100 0.46202 0.89415 1.36902 1.39128 1.47943 2.21398 2.30299 2.34608 3.06114 3.19500 3.93933 4.10338 4.32579 4.50614 4.67211 4.74124 4.74655 4.87056 4.90186 5.04380 5.10011 5.31430 5.43684 5.46093 5.57893 5.98156 6.33343 6.43163 6.57652 6.73299 6.97552 7.24635 7.35575 8.89763 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.009681 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.589568 B = 2891.673823 C = 3689.428051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 C -0.145 4.145 4 N -0.567 5.567 5 C 0.234 3.766 6 C -0.523 4.523 7 H 0.034 0.966 8 C 0.019 3.981 9 N -0.942 5.942 10 Si 0.930 3.070 11 H -0.260 1.260 12 H -0.284 1.284 13 H -0.245 1.245 14 C 0.324 3.676 15 N -0.547 5.547 16 C -0.053 4.053 17 C 0.038 3.962 18 N -0.835 5.835 19 S 0.026 5.974 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.025 0.975 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.052 0.948 29 H 0.266 0.734 30 H 0.182 0.818 31 H 0.415 0.585 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 -11.365 6.360 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.047 3.953 3 C -0.204 4.204 4 N -0.286 5.286 5 C 0.112 3.888 6 C -0.562 4.562 7 H 0.052 0.948 8 C -0.180 4.180 9 N -0.582 5.582 10 Si 0.753 3.247 11 H -0.184 1.184 12 H -0.209 1.209 13 H -0.169 1.169 14 C -0.049 4.049 15 N -0.273 5.273 16 C -0.204 4.204 17 C -0.187 4.187 18 N -0.385 5.385 19 S 0.268 5.732 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.109 0.891 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.199 0.801 31 H 0.248 0.752 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.980 -10.823 5.645 12.839 hybrid contribution 0.545 -0.325 -0.239 0.678 sum -3.434 -11.148 5.406 12.857 Atomic orbital electron populations 1.22112 0.93577 1.02185 1.03121 1.21069 0.94920 0.92446 0.86825 1.22053 0.99730 0.96320 1.02271 1.46290 1.50684 1.24302 1.07349 1.19468 0.96158 0.93875 0.79281 1.21499 1.08915 1.23512 1.02285 0.94792 1.25709 0.98884 0.94392 0.98978 1.70047 1.36993 1.29625 1.21534 0.85964 0.79911 0.80566 0.78225 1.18417 1.20949 1.16878 1.23999 0.97460 0.93963 0.89474 1.66320 1.21121 1.14398 1.25490 1.21003 1.05622 0.97289 0.96450 1.22873 1.03781 0.97358 0.94648 1.41240 1.57786 1.28541 1.10930 1.85236 1.52867 1.24705 1.10402 0.92689 0.92571 0.89116 0.89260 0.89820 0.95602 0.92936 0.95637 0.93068 0.92443 0.80146 0.75231 0.76413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.17 71.98 0.66 -3.71 16 2 C 0.15 5.48 3.33 44.99 0.15 5.63 16 3 C -0.15 -5.39 8.47 71.98 0.61 -4.78 16 4 N -0.57 -23.93 2.50 -685.59 -1.71 -25.64 16 5 C 0.23 10.68 3.68 85.63 0.31 11.00 16 6 C -0.52 -28.63 8.38 25.60 0.21 -28.41 16 7 H 0.03 2.14 7.87 -2.91 -0.02 2.12 16 8 C 0.02 1.05 5.47 84.66 0.46 1.51 16 9 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 10 Si 0.93 41.39 27.47 68.60 1.88 43.28 16 11 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.25 -10.10 6.54 99.48 0.65 -9.45 16 14 C 0.32 13.61 7.95 179.21 1.43 15.03 16 15 N -0.55 -21.61 9.59 -197.22 -1.89 -23.50 16 16 C -0.05 -1.77 11.29 83.60 0.94 -0.82 16 17 C 0.04 1.18 7.74 82.36 0.64 1.82 16 18 N -0.84 -18.00 9.16 -53.31 -0.49 -18.49 16 19 S 0.03 1.00 22.05 -56.49 -1.25 -0.24 16 20 H 0.05 1.65 6.66 -2.39 -0.02 1.63 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.09 3.21 7.15 -2.39 -0.02 3.19 16 24 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 2.18 6.92 -2.39 -0.02 2.16 16 27 H 0.03 1.18 6.16 -2.39 -0.01 1.17 16 28 H 0.05 2.19 5.85 -2.39 -0.01 2.18 16 29 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.18 4.85 8.06 -2.91 -0.02 4.82 16 31 H 0.41 6.49 8.95 -92.71 -0.83 5.66 16 32 H 0.41 7.60 8.96 -92.71 -0.83 6.77 16 Total: -1.00 -66.27 278.42 1.70 -64.57 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -0.57 Total: 19.55 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.42 Total: -2.74 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -3.79 Total: -124.42 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.88 Total: 43.28 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -1.25 Total: -0.24 kcal Total: -66.27 1.70 -64.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226736404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.501 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds