Wall clock time and date at job start Mon Mar 30 2020 04:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.82181 * 2 1 4 4 C 1.54893 * 110.75349 * 236.66290 * 2 1 3 5 5 C 1.54266 * 104.19500 * 203.74603 * 4 2 1 6 6 H 1.09004 * 110.07424 * 264.30420 * 5 4 2 7 7 C 1.50702 * 110.03320 * 142.89566 * 5 4 2 8 8 O 1.20819 * 120.00189 * 242.83000 * 7 5 4 9 9 O 1.34230 * 119.99523 * 62.83665 * 7 5 4 10 10 C 1.53872 * 106.60044 * 23.61099 * 5 4 2 11 11 H 1.09005 * 110.03465 * 119.28158 * 10 5 4 12 12 C 1.50699 * 110.03383 * 240.71796 * 10 5 4 13 13 O 1.21290 * 119.99947 * 358.61784 * 12 10 5 14 14 N 1.34784 * 119.99990 * 178.62020 * 12 10 5 15 15 C 1.37091 * 119.99836 * 179.97438 * 14 12 10 16 16 H 1.08002 * 120.00302 * 0.02562 * 15 14 12 17 17 C 1.38954 * 119.99768 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00304 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99722 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47206 * 90.00273 * 19 17 15 21 21 H 1.48499 * 109.47052 * 209.99673 * 19 17 15 22 22 H 1.48502 * 109.47532 * 329.99992 * 19 17 15 23 23 C 1.54266 * 106.59640 * 359.97438 * 10 5 4 24 24 H 1.09000 * 109.47123 * 296.66882 * 1 2 3 25 25 H 1.09004 * 109.46589 * 56.65941 * 1 2 3 26 26 H 1.08994 * 109.47482 * 176.65931 * 1 2 3 27 27 H 1.09002 * 110.48578 * 85.07081 * 4 2 1 28 28 H 1.08998 * 110.60430 * 322.47968 * 4 2 1 29 29 H 0.96704 * 116.99318 * 180.02562 * 9 7 5 30 30 H 0.96995 * 119.99821 * 359.97438 * 14 12 10 31 31 H 0.96992 * 120.00212 * 180.02562 * 18 17 15 32 32 H 1.09001 * 110.48620 * 95.07012 * 23 10 5 33 33 H 1.09004 * 110.48798 * 217.70845 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9175 1.0188 0.0000 4 6 2.0789 -0.7960 -1.2101 5 6 3.4930 -1.2270 -0.7694 6 1 4.2332 -0.5192 -1.1428 7 6 3.7956 -2.6101 -1.2856 8 8 3.9935 -3.5147 -0.5096 9 8 3.8453 -2.8370 -2.6077 10 6 3.4931 -1.2270 0.7693 11 1 3.7118 -2.2275 1.1427 12 6 4.5155 -0.2476 1.2856 13 8 5.2042 0.3771 0.5067 14 7 4.6646 -0.0659 2.6127 15 6 5.5951 0.8247 3.0824 16 1 6.2083 1.3810 2.3889 17 6 5.7484 1.0124 4.4506 18 7 5.0019 0.3359 5.2944 19 14 7.0158 2.2264 5.0904 20 1 6.3918 3.5670 5.2279 21 1 7.5110 1.7730 6.4149 22 1 8.1519 2.3045 4.1374 23 6 2.0791 -0.7954 1.2100 24 1 -0.3633 0.4612 0.9183 25 1 -0.3633 0.5649 -0.8586 26 1 -0.3634 -1.0258 -0.0599 27 1 2.1320 -0.1592 -2.0932 28 1 1.4581 -1.6698 -1.4078 29 1 4.0424 -3.7403 -2.8909 30 1 4.1136 -0.5652 3.2355 31 1 5.1087 0.4673 6.2494 32 1 1.4572 -1.6690 1.4054 33 1 2.1324 -0.1587 2.0931 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228946180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:54 Heat of formation + Delta-G solvation = -152.871868 kcal Electronic energy + Delta-G solvation = -17717.521124 eV Core-core repulsion = 14742.119087 eV Total energy + Delta-G solvation = -2975.402036 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54194 -38.76110 -36.75585 -35.93425 -33.98717 -31.41469 -31.23500 -29.05789 -25.61935 -24.87941 -23.12562 -20.57541 -19.96253 -18.46956 -18.07313 -17.71728 -16.78284 -15.75850 -15.36274 -15.22044 -14.44498 -14.13641 -13.86293 -13.24655 -13.12510 -12.91331 -12.43923 -12.19275 -11.70662 -11.46750 -11.42671 -11.13141 -11.10046 -10.85628 -10.63977 -10.43374 -10.40227 -10.34647 -10.21522 -10.03695 -9.52010 -8.38403 -7.98502 -6.42347 -3.83535 2.41124 3.16141 3.19809 3.26484 3.32505 3.88738 4.16972 4.56124 4.72651 4.93987 5.12910 5.27920 5.38205 5.50319 5.57188 5.65305 5.79489 5.86578 5.90559 6.01059 6.03088 6.16169 6.25788 6.33529 6.48614 6.54060 6.61553 6.67898 7.54533 8.03193 8.07006 8.58558 9.15594 9.53185 10.03099 10.75135 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.028408 B = 0.006622 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.407096 B = 4227.024849 C = 4708.765381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.084 0.916 4 C -0.100 4.100 5 C -0.078 4.078 6 H 0.137 0.863 7 C 0.488 3.512 8 O -0.517 6.517 9 O -0.516 6.516 10 C -0.103 4.103 11 H 0.108 0.892 12 C 0.449 3.551 13 O -0.597 6.597 14 N -0.555 5.555 15 C -0.302 4.302 16 H 0.104 0.896 17 C 0.024 3.976 18 N -0.899 5.899 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.270 1.270 23 C -0.111 4.111 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.404 0.596 30 H 0.394 0.606 31 H 0.272 0.728 32 H 0.070 0.930 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 -3.777 -9.934 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.102 0.898 4 C -0.138 4.138 5 C -0.097 4.097 6 H 0.154 0.846 7 C 0.331 3.669 8 O -0.405 6.405 9 O -0.328 6.328 10 C -0.124 4.124 11 H 0.126 0.874 12 C 0.235 3.765 13 O -0.484 6.484 14 N -0.190 5.190 15 C -0.432 4.432 16 H 0.121 0.879 17 C -0.178 4.178 18 N -0.540 5.540 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.148 4.148 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.262 0.738 30 H 0.228 0.772 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.861 -3.203 -9.867 13.016 hybrid contribution 0.541 -0.443 0.646 0.952 sum -7.320 -3.646 -9.221 12.324 Atomic orbital electron populations 1.21737 0.94827 1.01552 1.01696 1.22118 0.95244 0.99939 0.94264 0.89766 1.22336 0.92918 0.99894 0.98653 1.21643 1.01178 0.90956 0.95945 0.84577 1.23618 0.71723 0.92018 0.79550 1.90671 1.46073 1.46349 1.57408 1.84571 1.83531 1.38288 1.26378 1.21779 0.96102 1.01763 0.92784 0.87426 1.19617 0.86944 0.86609 0.83378 1.90466 1.49919 1.52128 1.55849 1.41804 1.34587 1.37759 1.04833 1.19736 1.14405 1.17800 0.91248 0.87862 1.25276 0.98407 0.98360 0.95779 1.69614 1.39766 1.41384 1.03221 0.85859 0.80432 0.79915 0.78089 1.20365 1.20894 1.19412 1.22478 0.93866 0.99966 0.98538 0.92392 0.92783 0.92791 0.90498 0.91482 0.73842 0.77214 0.91795 0.91135 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.28 37.16 0.34 -1.20 16 2 C -0.10 -1.33 3.49 -88.64 -0.31 -1.64 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C -0.10 -1.32 5.78 -25.07 -0.15 -1.46 16 5 C -0.08 -1.29 3.01 -90.65 -0.27 -1.56 16 6 H 0.14 2.53 6.39 -51.93 -0.33 2.20 16 7 C 0.49 7.71 7.47 36.01 0.27 7.98 16 8 O -0.52 -9.55 15.97 -18.74 -0.30 -9.85 16 9 O -0.52 -6.27 13.41 -39.26 -0.53 -6.80 16 10 C -0.10 -1.92 2.90 -90.66 -0.26 -2.18 16 11 H 0.11 2.10 6.40 -51.93 -0.33 1.76 16 12 C 0.45 10.72 7.04 -10.98 -0.08 10.64 16 13 O -0.60 -16.03 14.79 5.55 0.08 -15.95 16 14 N -0.56 -14.26 4.96 -10.96 -0.05 -14.31 16 15 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 16 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 18 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 19 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.11 -1.74 5.76 -25.09 -0.14 -1.88 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.54 8.10 -51.93 -0.42 0.12 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.79 7.72 -51.93 -0.40 0.39 16 29 H 0.40 3.01 9.10 45.56 0.41 3.42 16 30 H 0.39 9.78 7.67 -40.82 -0.31 9.46 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 32 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 33 H 0.08 1.37 7.40 -51.93 -0.38 0.98 16 LS Contribution 281.82 15.07 4.25 4.25 Total: -1.00 -32.26 281.82 -5.08 -37.34 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -3.39 Total: 12.48 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.84 Total: 0.62 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.67 Total: -38.15 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.74 Total: -32.59 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.26 -5.08 -37.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228946180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.533 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds