Wall clock time and date at job start Mon Mar 30 2020 04:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.82181 * 2 1 4 4 C 1.54893 * 110.75349 * 236.66290 * 2 1 3 5 5 C 1.54266 * 104.19500 * 203.74603 * 4 2 1 6 6 H 1.09004 * 110.07424 * 264.30420 * 5 4 2 7 7 C 1.50702 * 110.03320 * 142.89566 * 5 4 2 8 8 O 1.20819 * 120.00189 * 242.83000 * 7 5 4 9 9 O 1.34230 * 119.99523 * 62.83665 * 7 5 4 10 10 C 1.53872 * 106.60044 * 23.61099 * 5 4 2 11 11 H 1.09005 * 110.03465 * 119.28158 * 10 5 4 12 12 C 1.50699 * 110.03383 * 240.71796 * 10 5 4 13 13 O 1.21290 * 119.99947 * 358.61784 * 12 10 5 14 14 N 1.34784 * 119.99990 * 178.62020 * 12 10 5 15 15 C 1.37091 * 119.99836 * 179.97438 * 14 12 10 16 16 H 1.08002 * 120.00302 * 0.02562 * 15 14 12 17 17 C 1.38954 * 119.99768 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00304 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99722 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47206 * 90.00273 * 19 17 15 21 21 H 1.48499 * 109.47052 * 209.99673 * 19 17 15 22 22 H 1.48502 * 109.47532 * 329.99992 * 19 17 15 23 23 C 1.54266 * 106.59640 * 359.97438 * 10 5 4 24 24 H 1.09000 * 109.47123 * 296.66882 * 1 2 3 25 25 H 1.09004 * 109.46589 * 56.65941 * 1 2 3 26 26 H 1.08994 * 109.47482 * 176.65931 * 1 2 3 27 27 H 1.09002 * 110.48578 * 85.07081 * 4 2 1 28 28 H 1.08998 * 110.60430 * 322.47968 * 4 2 1 29 29 H 0.96704 * 116.99318 * 180.02562 * 9 7 5 30 30 H 0.96995 * 119.99821 * 359.97438 * 14 12 10 31 31 H 0.96992 * 120.00212 * 180.02562 * 18 17 15 32 32 H 1.09001 * 110.48620 * 95.07012 * 23 10 5 33 33 H 1.09004 * 110.48798 * 217.70845 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9175 1.0188 0.0000 4 6 2.0789 -0.7960 -1.2101 5 6 3.4930 -1.2270 -0.7694 6 1 4.2332 -0.5192 -1.1428 7 6 3.7956 -2.6101 -1.2856 8 8 3.9935 -3.5147 -0.5096 9 8 3.8453 -2.8370 -2.6077 10 6 3.4931 -1.2270 0.7693 11 1 3.7118 -2.2275 1.1427 12 6 4.5155 -0.2476 1.2856 13 8 5.2042 0.3771 0.5067 14 7 4.6646 -0.0659 2.6127 15 6 5.5951 0.8247 3.0824 16 1 6.2083 1.3810 2.3889 17 6 5.7484 1.0124 4.4506 18 7 5.0019 0.3359 5.2944 19 14 7.0158 2.2264 5.0904 20 1 6.3918 3.5670 5.2279 21 1 7.5110 1.7730 6.4149 22 1 8.1519 2.3045 4.1374 23 6 2.0791 -0.7954 1.2100 24 1 -0.3633 0.4612 0.9183 25 1 -0.3633 0.5649 -0.8586 26 1 -0.3634 -1.0258 -0.0599 27 1 2.1320 -0.1592 -2.0932 28 1 1.4581 -1.6698 -1.4078 29 1 4.0424 -3.7403 -2.8909 30 1 4.1136 -0.5652 3.2355 31 1 5.1087 0.4673 6.2494 32 1 1.4572 -1.6690 1.4054 33 1 2.1324 -0.1587 2.0931 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228946180.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:54 Heat of formation + Delta-G solvation = -175.809380 kcal Electronic energy + Delta-G solvation = -17718.515769 eV Core-core repulsion = 14742.119087 eV Total energy + Delta-G solvation = -2976.396682 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.87097 -40.35228 -38.25952 -37.10286 -36.03665 -33.38126 -32.50542 -30.45752 -27.10068 -26.43423 -24.51926 -22.11260 -21.08765 -20.28610 -19.74070 -19.16695 -18.15482 -17.18596 -17.02764 -16.59461 -16.18166 -15.68304 -15.61540 -14.65929 -14.51030 -14.30205 -13.73657 -13.55667 -13.19192 -12.95978 -12.85511 -12.61138 -12.45713 -12.35322 -12.20861 -12.10977 -11.76133 -11.72153 -11.54533 -11.48705 -11.25516 -10.34029 -10.05883 -8.49406 -5.99242 1.16694 1.36274 1.40354 1.53528 1.95509 2.07421 2.29378 3.13106 3.17542 3.31241 3.63255 3.94546 4.20757 4.30945 4.40356 4.42788 4.54974 4.66332 4.70123 4.78098 4.91793 5.01701 5.07766 5.13557 5.30948 5.36987 5.38522 5.52574 5.58843 5.95712 6.53411 6.98438 7.07017 7.50149 8.03398 8.68070 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.028408 B = 0.006622 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.407096 B = 4227.024849 C = 4708.765381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.063 0.937 4 C -0.089 4.089 5 C -0.082 4.082 6 H 0.113 0.887 7 C 0.497 3.503 8 O -0.548 6.548 9 O -0.502 6.502 10 C -0.097 4.097 11 H 0.101 0.899 12 C 0.446 3.554 13 O -0.631 6.631 14 N -0.565 5.565 15 C -0.339 4.339 16 H 0.081 0.919 17 C -0.012 4.012 18 N -0.919 5.919 19 Si 0.995 3.005 20 H -0.268 1.268 21 H -0.270 1.270 22 H -0.273 1.273 23 C -0.107 4.107 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.427 0.573 30 H 0.396 0.604 31 H 0.279 0.721 32 H 0.096 0.904 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 -4.049 -10.653 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.081 0.919 4 C -0.127 4.127 5 C -0.101 4.101 6 H 0.131 0.869 7 C 0.341 3.659 8 O -0.439 6.439 9 O -0.316 6.316 10 C -0.119 4.119 11 H 0.119 0.881 12 C 0.234 3.766 13 O -0.520 6.520 14 N -0.200 5.200 15 C -0.468 4.468 16 H 0.099 0.901 17 C -0.212 4.212 18 N -0.559 5.559 19 Si 0.818 3.182 20 H -0.193 1.193 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.145 4.145 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.289 0.711 30 H 0.230 0.770 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.107 -3.497 -10.611 14.414 hybrid contribution 0.946 -0.395 0.796 1.298 sum -8.160 -3.892 -9.815 13.344 Atomic orbital electron populations 1.21698 0.92109 1.02876 1.02487 1.22102 0.97408 0.98464 0.93412 0.91874 1.22360 0.90634 1.00906 0.98784 1.21584 1.02959 0.91335 0.94220 0.86896 1.23325 0.71019 0.91155 0.80393 1.90669 1.47634 1.47134 1.58457 1.84501 1.82710 1.40362 1.23988 1.21728 0.96129 0.99414 0.94600 0.88109 1.20551 0.87004 0.86484 0.82558 1.90433 1.51362 1.53627 1.56535 1.41874 1.34618 1.37875 1.05628 1.19735 1.15832 1.19436 0.91812 0.90058 1.26097 1.00013 0.99719 0.95344 1.69679 1.40526 1.42025 1.03695 0.84901 0.77753 0.77919 0.77593 1.19295 1.19515 1.19758 1.22495 0.92335 1.00936 0.98722 0.92491 0.91097 0.91270 0.88760 0.89139 0.71085 0.77010 0.91156 0.88585 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.28 71.98 0.67 -1.87 16 2 C -0.10 -2.46 3.49 -9.51 -0.03 -2.50 16 3 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.09 -2.13 5.78 31.67 0.18 -1.95 16 5 C -0.08 -2.64 3.01 -10.82 -0.03 -2.67 16 6 H 0.11 4.26 6.39 -2.39 -0.02 4.24 16 7 C 0.50 15.00 7.47 71.24 0.53 15.53 16 8 O -0.55 -19.76 15.97 21.98 0.35 -19.41 16 9 O -0.50 -10.87 13.41 -51.42 -0.69 -11.56 16 10 C -0.10 -3.68 2.90 -10.82 -0.03 -3.71 16 11 H 0.10 3.98 6.40 -2.38 -0.02 3.96 16 12 C 0.45 22.13 7.04 87.66 0.62 22.75 16 13 O -0.63 -35.32 14.79 -3.06 -0.05 -35.36 16 14 N -0.57 -30.15 4.96 -306.98 -1.52 -31.67 16 15 C -0.34 -19.64 9.68 84.04 0.81 -18.83 16 16 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 17 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 18 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 19 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 C -0.11 -3.30 5.76 31.66 0.18 -3.12 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 1.77 7.72 -2.39 -0.02 1.76 16 29 H 0.43 5.08 9.10 -74.05 -0.67 4.40 16 30 H 0.40 20.39 7.67 -92.71 -0.71 19.68 16 31 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 33 H 0.06 2.07 7.40 -2.38 -0.02 2.05 16 Total: -1.00 -70.94 281.82 3.53 -67.41 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.24 Total: 31.93 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 3.37 Total: 3.48 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.24 Total: -81.84 kcal Atomic # 8 Polarization: -65.95 SS G_CDS: -0.38 Total: -66.33 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.94 3.53 -67.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228946180.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.398 kcal (2) G-P(sol) polarization free energy of solvation -70.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds