Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00199 * 2 1 4 4 O 1.21483 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.48454 * 120.00050 * 180.27247 * 3 2 1 6 6 N 1.30671 * 126.40185 * 359.41376 * 5 3 2 7 7 O 1.21293 * 110.10446 * 179.86624 * 6 5 3 8 8 C 1.33686 * 110.01828 * 0.39925 * 7 6 5 9 9 C 1.50694 * 126.45001 * 179.75011 * 8 7 6 10 10 C 1.52998 * 109.47154 * 270.00335 * 9 8 7 11 11 H 1.08999 * 109.47114 * 304.99391 * 10 9 8 12 12 O 1.42898 * 109.47300 * 64.99697 * 10 9 8 13 13 C 1.50701 * 109.47138 * 184.99994 * 10 9 8 14 14 H 1.08002 * 120.00126 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00187 * 179.97438 * 13 10 9 16 16 N 1.31507 * 119.99859 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 120.00138 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47182 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47143 * 119.99967 * 17 15 13 20 20 H 1.48498 * 109.46944 * 240.00048 * 17 15 13 21 21 N 1.30945 * 107.10683 * 359.75304 * 8 7 6 22 22 H 1.08998 * 109.47134 * 300.00670 * 1 2 3 23 23 H 1.08997 * 109.46691 * 60.00285 * 1 2 3 24 24 H 1.09001 * 109.47503 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00074 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46788 * 29.99858 * 9 8 7 27 27 H 1.08998 * 109.47692 * 150.00105 * 9 8 7 28 28 H 0.96697 * 113.99612 * 60.00590 * 12 10 9 29 29 H 0.97001 * 119.99985 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5315 2.2193 -0.0005 5 6 3.6234 1.1671 -0.0061 6 7 4.3989 0.1154 -0.0010 7 8 5.5631 0.4557 -0.0112 8 6 5.6499 1.7898 -0.0153 9 6 6.9176 2.6045 -0.0221 10 6 7.3519 2.8842 1.4180 11 1 6.5331 3.3590 1.9587 12 8 7.6962 1.6544 2.0591 13 6 8.5484 3.8004 1.4129 14 1 8.9584 4.1480 0.4761 15 6 9.1198 4.1949 2.6041 16 7 8.6202 3.7720 3.7448 17 14 10.6034 5.3299 2.5978 18 1 10.9690 5.6589 1.1965 19 1 10.2741 6.5790 3.3302 20 1 11.7468 4.6537 3.2614 21 7 4.4260 2.2554 -0.0121 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.9500 -0.8400 0.0004 26 1 7.7025 2.0507 -0.5372 27 1 6.7403 3.5482 -0.5380 28 1 8.4196 1.1767 1.6307 29 1 9.0220 4.0498 4.5828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234339401.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = -18.348111 kcal Electronic energy + Delta-G solvation = -16799.688301 eV Core-core repulsion = 13726.579309 eV Total energy + Delta-G solvation = -3073.108992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.35732 -39.67169 -36.45441 -35.36447 -34.89501 -32.87201 -32.24317 -29.62552 -27.77078 -25.86707 -24.54830 -23.00697 -21.38611 -20.51702 -18.41722 -17.91804 -17.09988 -16.76424 -15.92938 -15.37314 -14.70878 -14.65463 -14.42106 -13.97279 -13.75131 -13.20874 -12.94146 -12.59377 -12.39460 -11.56253 -11.33114 -11.19238 -10.94977 -10.92853 -10.80146 -10.50159 -10.21935 -10.02527 -9.46004 -9.20418 -8.70035 -8.37926 -6.12553 -4.33198 1.02680 1.94451 2.57163 3.08071 3.13952 3.22801 3.31631 3.34056 3.91315 4.19714 4.32897 4.89435 5.14498 5.18112 5.22801 5.50586 5.70297 5.76525 5.96347 6.01152 6.09699 6.19658 6.51371 7.07192 7.48255 7.69905 7.82207 7.95231 8.27366 8.68575 9.20545 9.43709 10.91914 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.052608 B = 0.004821 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.111199 B = 5806.193159 C = 5929.777872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.720 5.720 3 C 0.614 3.386 4 O -0.500 6.500 5 C 0.124 3.876 6 N -0.365 5.365 7 O 0.095 5.905 8 C 0.227 3.773 9 C -0.063 4.063 10 C 0.235 3.765 11 H 0.067 0.933 12 O -0.564 6.564 13 C -0.575 4.575 14 H 0.064 0.936 15 C 0.080 3.920 16 N -0.855 5.855 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 N -0.457 5.457 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.410 0.590 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.350 0.650 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 -8.699 -8.074 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.374 5.374 3 C 0.396 3.604 4 O -0.370 6.370 5 C -0.150 4.150 6 N -0.074 5.074 7 O 0.029 5.971 8 C 0.008 3.992 9 C -0.103 4.103 10 C 0.176 3.824 11 H 0.084 0.916 12 O -0.367 6.367 13 C -0.613 4.613 14 H 0.082 0.918 15 C -0.127 4.127 16 N -0.490 5.490 17 Si 0.722 3.278 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 N -0.190 5.190 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.245 0.755 26 H 0.115 0.885 27 H 0.131 0.869 28 H 0.194 0.806 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.391 -8.201 -7.461 15.196 hybrid contribution 1.620 0.124 -0.237 1.642 sum -8.771 -8.078 -7.699 14.193 Atomic orbital electron populations 1.21634 0.78014 1.02802 1.02888 1.45508 1.08207 1.08161 1.75510 1.16350 0.82466 0.84434 0.77166 1.90829 1.67619 1.31011 1.47563 1.25380 0.98018 0.85509 1.06058 1.74767 0.90138 1.23684 1.18774 1.85252 1.21155 1.26034 1.64651 1.29520 0.97370 0.80734 0.91534 1.21691 0.85904 0.97067 1.05636 1.19502 0.96284 0.83561 0.83082 0.91577 1.86620 1.55392 1.36571 1.58089 1.21518 1.14955 1.31596 0.93229 0.91818 1.25049 0.97053 0.95160 0.95442 1.70085 1.39591 1.41943 0.97386 0.86509 0.82392 0.80519 0.78341 1.19507 1.20801 1.20818 1.72079 0.99310 1.27534 1.20085 0.91627 0.91694 0.89994 0.75549 0.88464 0.86910 0.80571 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.70 59.85 0.64 1.39 15 2 N -0.72 -8.30 5.71 -67.85 -0.39 -8.69 15 3 C 0.61 10.14 7.85 -12.05 -0.09 10.05 15 4 O -0.50 -9.74 17.10 5.38 0.09 -9.65 15 5 C 0.12 2.27 8.01 -156.18 -1.25 1.02 15 6 N -0.36 -6.20 11.89 30.93 0.37 -5.83 15 7 O 0.09 1.66 11.29 17.99 0.20 1.86 15 8 C 0.23 4.24 7.52 -13.00 -0.10 4.14 15 9 C -0.06 -1.15 5.46 -27.89 -0.15 -1.30 15 10 C 0.23 5.51 2.81 -27.88 -0.08 5.43 15 11 H 0.07 1.79 8.14 -51.93 -0.42 1.37 15 12 O -0.56 -13.46 12.49 -35.23 -0.44 -13.90 15 13 C -0.58 -14.55 8.76 -34.44 -0.30 -14.85 15 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 15 15 C 0.08 2.13 5.40 -17.82 -0.10 2.04 15 16 N -0.86 -24.44 12.84 55.43 0.71 -23.72 15 17 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 15 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 21 N -0.46 -9.27 11.57 -9.93 -0.11 -9.38 15 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 15 25 H 0.41 3.93 8.56 -40.82 -0.35 3.58 15 26 H 0.10 1.48 8.14 -51.93 -0.42 1.05 15 27 H 0.11 1.94 8.14 -51.93 -0.42 1.52 15 28 H 0.35 7.04 9.04 45.56 0.41 7.45 15 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 LS Contribution 272.77 15.07 4.11 4.11 Total: -1.00 -32.55 272.77 -3.92 -36.48 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -2.02 Total: 5.65 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.43 Total: 7.92 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.58 Total: -47.63 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.14 Total: -21.68 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.55 -3.92 -36.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234339401.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.130 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds