Wall clock time and date at job start Mon Mar 30 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00199 * 2 1 4 4 O 1.21483 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.48454 * 120.00050 * 180.27247 * 3 2 1 6 6 N 1.30671 * 126.40185 * 359.41376 * 5 3 2 7 7 O 1.21293 * 110.10446 * 179.86624 * 6 5 3 8 8 C 1.33686 * 110.01828 * 0.39925 * 7 6 5 9 9 C 1.50694 * 126.45001 * 179.75011 * 8 7 6 10 10 C 1.52998 * 109.47154 * 270.00335 * 9 8 7 11 11 H 1.08999 * 109.47114 * 304.99391 * 10 9 8 12 12 O 1.42898 * 109.47300 * 64.99697 * 10 9 8 13 13 C 1.50701 * 109.47138 * 184.99994 * 10 9 8 14 14 H 1.08002 * 120.00126 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00187 * 179.97438 * 13 10 9 16 16 N 1.31507 * 119.99859 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 120.00138 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47182 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47143 * 119.99967 * 17 15 13 20 20 H 1.48498 * 109.46944 * 240.00048 * 17 15 13 21 21 N 1.30945 * 107.10683 * 359.75304 * 8 7 6 22 22 H 1.08998 * 109.47134 * 300.00670 * 1 2 3 23 23 H 1.08997 * 109.46691 * 60.00285 * 1 2 3 24 24 H 1.09001 * 109.47503 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00074 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46788 * 29.99858 * 9 8 7 27 27 H 1.08998 * 109.47692 * 150.00105 * 9 8 7 28 28 H 0.96697 * 113.99612 * 60.00590 * 12 10 9 29 29 H 0.97001 * 119.99985 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5315 2.2193 -0.0005 5 6 3.6234 1.1671 -0.0061 6 7 4.3989 0.1154 -0.0010 7 8 5.5631 0.4557 -0.0112 8 6 5.6499 1.7898 -0.0153 9 6 6.9176 2.6045 -0.0221 10 6 7.3519 2.8842 1.4180 11 1 6.5331 3.3590 1.9587 12 8 7.6962 1.6544 2.0591 13 6 8.5484 3.8004 1.4129 14 1 8.9584 4.1480 0.4761 15 6 9.1198 4.1949 2.6041 16 7 8.6202 3.7720 3.7448 17 14 10.6034 5.3299 2.5978 18 1 10.9690 5.6589 1.1965 19 1 10.2741 6.5790 3.3302 20 1 11.7468 4.6537 3.2614 21 7 4.4260 2.2554 -0.0121 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.9500 -0.8400 0.0004 26 1 7.7025 2.0507 -0.5372 27 1 6.7403 3.5482 -0.5380 28 1 8.4196 1.1767 1.6307 29 1 9.0220 4.0498 4.5828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234339401.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:50 Heat of formation + Delta-G solvation = -47.487584 kcal Electronic energy + Delta-G solvation = -16800.951883 eV Core-core repulsion = 13726.579309 eV Total energy + Delta-G solvation = -3074.372574 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.78530 -40.90599 -38.22685 -36.84309 -36.02544 -34.41101 -34.18669 -31.25225 -28.82056 -27.70200 -25.75173 -24.56877 -23.02912 -21.82390 -19.80983 -19.35425 -18.91212 -18.12587 -17.10120 -16.65492 -16.53232 -16.39936 -15.82878 -15.48746 -15.25321 -14.70494 -14.14839 -13.94421 -13.32335 -13.18900 -12.93644 -12.90768 -12.75038 -12.56336 -12.32640 -11.99744 -11.82890 -11.60083 -11.00176 -10.71009 -10.46210 -10.21695 -8.12845 -6.38745 -0.36861 0.50378 1.41531 1.46392 1.48594 1.59827 1.64320 1.79424 2.43046 2.62600 2.91871 3.15747 3.77007 4.16977 4.28957 4.35878 4.38432 4.47788 4.54734 4.72066 4.86789 4.99999 5.03297 5.57499 5.70995 5.99983 6.03165 6.68454 6.73614 6.85230 7.35953 7.55666 8.92666 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.052608 B = 0.004821 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.111199 B = 5806.193159 C = 5929.777872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.697 5.697 3 C 0.608 3.392 4 O -0.540 6.540 5 C 0.114 3.886 6 N -0.351 5.351 7 O 0.100 5.900 8 C 0.228 3.772 9 C -0.048 4.048 10 C 0.235 3.765 11 H 0.018 0.982 12 O -0.582 6.582 13 C -0.577 4.577 14 H 0.080 0.920 15 C 0.023 3.977 16 N -0.903 5.903 17 Si 0.965 3.035 18 H -0.254 1.254 19 H -0.287 1.287 20 H -0.282 1.282 21 N -0.490 5.490 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.126 0.874 25 H 0.421 0.579 26 H 0.135 0.865 27 H 0.123 0.877 28 H 0.367 0.633 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -9.620 -9.440 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.349 5.349 3 C 0.389 3.611 4 O -0.414 6.414 5 C -0.160 4.160 6 N -0.059 5.059 7 O 0.034 5.966 8 C 0.009 3.991 9 C -0.087 4.087 10 C 0.176 3.824 11 H 0.036 0.964 12 O -0.387 6.387 13 C -0.615 4.615 14 H 0.099 0.901 15 C -0.180 4.180 16 N -0.540 5.540 17 Si 0.789 3.211 18 H -0.178 1.178 19 H -0.214 1.214 20 H -0.208 1.208 21 N -0.223 5.223 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.144 0.856 25 H 0.258 0.742 26 H 0.153 0.847 27 H 0.141 0.859 28 H 0.213 0.787 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.024 -9.183 -8.859 16.226 hybrid contribution 1.428 0.304 0.179 1.471 sum -8.595 -8.878 -8.679 15.101 Atomic orbital electron populations 1.21966 0.75660 1.05658 1.02643 1.45533 1.09583 1.07029 1.72794 1.16432 0.81840 0.85313 0.77473 1.90804 1.67933 1.32554 1.50110 1.25785 0.99058 0.85161 1.06002 1.74735 0.89846 1.23086 1.18193 1.85242 1.21345 1.25544 1.64482 1.29486 0.97143 0.81051 0.91381 1.21466 0.86695 0.98285 1.02287 1.19217 0.94448 0.83258 0.85438 0.96422 1.86552 1.56338 1.36647 1.59179 1.21981 1.14860 1.31013 0.93653 0.90145 1.25950 1.00033 0.96773 0.95213 1.70238 1.41553 1.44150 0.98068 0.85428 0.78713 0.78016 0.78907 1.17782 1.21367 1.20750 1.72060 1.00347 1.28972 1.20969 0.92157 0.91661 0.85572 0.74208 0.84740 0.85880 0.78687 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.70 127.77 1.37 2.56 15 2 N -0.70 -14.86 5.71 -486.88 -2.78 -17.64 15 3 C 0.61 19.83 7.85 86.97 0.68 20.51 15 4 O -0.54 -21.26 17.10 -3.66 -0.06 -21.32 15 5 C 0.11 4.12 8.01 137.33 1.10 5.22 15 6 N -0.35 -11.50 11.89 -59.35 -0.71 -12.21 15 7 O 0.10 3.36 11.29 74.45 0.84 4.20 15 8 C 0.23 8.33 7.52 88.36 0.66 8.99 15 9 C -0.05 -1.67 5.46 29.85 0.16 -1.51 15 10 C 0.24 11.04 2.81 29.85 0.08 11.13 15 11 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 12 O -0.58 -27.70 12.49 -148.98 -1.86 -29.56 15 13 C -0.58 -28.68 8.76 25.60 0.22 -28.46 15 14 H 0.08 3.65 7.74 -2.91 -0.02 3.63 15 15 C 0.02 1.20 5.40 84.66 0.46 1.66 15 16 N -0.90 -52.50 12.84 21.45 0.28 -52.23 15 17 Si 0.96 41.09 29.54 68.60 2.03 43.12 15 18 H -0.25 -10.05 7.11 99.48 0.71 -9.35 15 19 H -0.29 -12.39 7.11 99.48 0.71 -11.68 15 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 21 N -0.49 -19.88 11.57 -302.78 -3.50 -23.38 15 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 15 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 15 24 H 0.13 0.72 8.14 -2.39 -0.02 0.70 15 25 H 0.42 7.09 8.56 -92.71 -0.79 6.30 15 26 H 0.13 3.64 8.14 -2.39 -0.02 3.62 15 27 H 0.12 4.03 8.14 -2.39 -0.02 4.01 15 28 H 0.37 14.36 9.04 -74.06 -0.67 13.69 15 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 15 Total: -1.00 -71.34 272.77 -1.28 -72.62 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -0.25 Total: 16.31 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: 4.74 Total: 20.10 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -6.71 Total: -105.46 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.08 Total: -46.69 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -71.34 -1.28 -72.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234339401.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.129 kcal (2) G-P(sol) polarization free energy of solvation -71.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds