Wall clock time and date at job start Mon Mar 30 2020 03:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00199 * 2 1 4 4 O 1.21483 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.48454 * 120.00050 * 180.27247 * 3 2 1 6 6 N 1.30671 * 126.40185 * 359.41376 * 5 3 2 7 7 O 1.21293 * 110.10446 * 179.86624 * 6 5 3 8 8 C 1.33686 * 110.01828 * 0.39925 * 7 6 5 9 9 C 1.50694 * 126.45001 * 179.75011 * 8 7 6 10 10 C 1.52998 * 109.47154 * 270.00335 * 9 8 7 11 11 H 1.08993 * 109.47481 * 54.99772 * 10 9 8 12 12 O 1.42901 * 109.46968 * 294.99365 * 10 9 8 13 13 C 1.50706 * 109.47329 * 174.99979 * 10 9 8 14 14 H 1.08000 * 119.99779 * 359.97438 * 13 10 9 15 15 C 1.37870 * 120.00190 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00411 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99873 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47257 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46709 * 120.00479 * 17 15 13 20 20 H 1.48496 * 109.47365 * 240.00123 * 17 15 13 21 21 N 1.30945 * 107.10683 * 359.75304 * 8 7 6 22 22 H 1.09001 * 109.47503 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47134 * 300.00670 * 1 2 3 24 24 H 1.08997 * 109.46691 * 60.00285 * 1 2 3 25 25 H 0.97001 * 120.00074 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46788 * 29.99858 * 9 8 7 27 27 H 1.08998 * 109.47692 * 150.00105 * 9 8 7 28 28 H 0.96699 * 114.00274 * 300.00276 * 12 10 9 29 29 H 0.96997 * 120.00852 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5315 2.2193 -0.0005 5 6 3.6234 1.1671 -0.0061 6 7 4.3989 0.1154 -0.0010 7 8 5.5631 0.4557 -0.0112 8 6 5.6499 1.7898 -0.0153 9 6 6.9176 2.6045 -0.0221 10 6 7.3519 2.8842 1.4180 11 1 7.4433 1.9427 1.9594 12 8 6.3760 3.7090 2.0581 13 6 8.6823 3.5921 1.4130 14 1 9.1696 3.8192 0.4764 15 6 9.2774 3.9496 2.6042 16 7 8.6844 3.6725 3.7448 17 14 10.9270 4.8263 2.5980 18 1 11.3797 5.0193 1.1969 19 1 10.7871 6.1486 3.2592 20 1 11.9250 4.0085 3.3329 21 7 4.4260 2.2554 -0.0121 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.9500 -0.8400 0.0004 26 1 7.7025 2.0507 -0.5372 27 1 6.7403 3.5482 -0.5380 28 1 6.2422 4.5651 1.6290 29 1 9.1032 3.9237 4.5829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234339474.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:52 Heat of formation + Delta-G solvation = -17.648555 kcal Electronic energy + Delta-G solvation = -16817.992171 eV Core-core repulsion = 13744.913514 eV Total energy + Delta-G solvation = -3073.078657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.35651 -39.66072 -36.43187 -35.29317 -34.88609 -32.86819 -32.21323 -29.61788 -27.74958 -25.85757 -24.54096 -22.98519 -21.43276 -20.46750 -18.36575 -17.91897 -17.07125 -16.76567 -15.92394 -15.36391 -14.72340 -14.58649 -14.38499 -14.28956 -13.39687 -13.19965 -12.91172 -12.60266 -12.44223 -11.53564 -11.31674 -11.16746 -10.96090 -10.85405 -10.80190 -10.48852 -10.21514 -9.98715 -9.45129 -9.17701 -8.69793 -8.31718 -6.11988 -4.32728 1.02242 1.97400 2.58173 3.06984 3.15643 3.22716 3.31656 3.33972 3.91829 4.22049 4.33367 4.90032 5.15782 5.18671 5.23373 5.51157 5.68641 5.81452 5.97854 6.02021 6.16293 6.20361 6.51608 7.07984 7.46251 7.70474 7.83256 7.95979 8.27902 8.69373 9.27160 9.45246 10.92353 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.058065 B = 0.004831 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.101937 B = 5795.034773 C = 5957.796955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.721 5.721 3 C 0.614 3.386 4 O -0.499 6.499 5 C 0.126 3.874 6 N -0.367 5.367 7 O 0.086 5.914 8 C 0.224 3.776 9 C -0.064 4.064 10 C 0.235 3.765 11 H 0.063 0.937 12 O -0.559 6.559 13 C -0.576 4.576 14 H 0.063 0.937 15 C 0.080 3.920 16 N -0.855 5.855 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 N -0.445 5.445 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.410 0.590 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.352 0.648 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 -7.940 -8.066 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.374 5.374 3 C 0.396 3.604 4 O -0.369 6.369 5 C -0.148 4.148 6 N -0.076 5.076 7 O 0.021 5.979 8 C 0.005 3.995 9 C -0.103 4.103 10 C 0.176 3.824 11 H 0.080 0.920 12 O -0.362 6.362 13 C -0.613 4.613 14 H 0.081 0.919 15 C -0.127 4.127 16 N -0.490 5.490 17 Si 0.722 3.278 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 N -0.177 5.177 22 H 0.100 0.900 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.244 0.756 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.196 0.804 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.456 -8.147 -7.453 15.207 hybrid contribution 1.396 0.476 -0.236 1.494 sum -9.060 -7.671 -7.689 14.144 Atomic orbital electron populations 1.21632 0.78032 1.02781 1.02887 1.45509 1.08200 1.08162 1.75563 1.16352 0.82482 0.84423 0.77171 1.90830 1.67608 1.31000 1.47485 1.25411 0.98030 0.85551 1.05814 1.74766 0.90067 1.23694 1.19116 1.85245 1.21357 1.26175 1.65108 1.29543 0.97530 0.80583 0.91843 1.21692 0.85936 0.96985 1.05722 1.19454 0.87126 0.92799 0.83003 0.91969 1.86604 1.61589 1.30312 1.57681 1.21534 1.04879 1.41722 0.93203 0.91850 1.25043 0.97322 0.94871 0.95452 1.70084 1.37581 1.43978 0.97382 0.86519 0.83530 0.79447 0.78317 1.19525 1.20826 1.20829 1.72081 0.99187 1.27211 1.19249 0.90018 0.91625 0.91703 0.75581 0.87833 0.87629 0.80395 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.70 59.85 0.64 1.39 15 2 N -0.72 -8.31 5.71 -67.85 -0.39 -8.70 15 3 C 0.61 10.13 7.85 -12.05 -0.09 10.04 15 4 O -0.50 -9.73 17.10 5.38 0.09 -9.63 15 5 C 0.13 2.29 8.01 -156.18 -1.25 1.04 15 6 N -0.37 -6.20 11.89 30.93 0.37 -5.83 15 7 O 0.09 1.50 11.29 17.99 0.20 1.70 15 8 C 0.22 4.16 7.52 -13.00 -0.10 4.06 15 9 C -0.06 -1.15 5.46 -27.89 -0.15 -1.30 15 10 C 0.24 5.50 2.81 -27.88 -0.08 5.43 15 11 H 0.06 1.61 8.14 -51.93 -0.42 1.18 15 12 O -0.56 -14.02 12.48 -35.23 -0.44 -14.46 15 13 C -0.58 -14.49 8.76 -34.44 -0.30 -14.79 15 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 15 C 0.08 2.13 5.40 -17.82 -0.10 2.03 15 16 N -0.86 -24.39 12.84 55.43 0.71 -23.68 15 17 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 15 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 21 N -0.44 -8.93 11.57 -9.93 -0.11 -9.04 15 22 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 15 23 H 0.07 0.59 8.14 -51.93 -0.42 0.16 15 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 25 H 0.41 3.92 8.56 -40.82 -0.35 3.57 15 26 H 0.10 1.61 8.14 -51.93 -0.42 1.18 15 27 H 0.11 1.77 8.14 -51.93 -0.42 1.35 15 28 H 0.35 7.86 9.04 45.56 0.41 8.28 15 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 LS Contribution 272.77 15.07 4.11 4.11 Total: -1.00 -32.37 272.77 -3.93 -36.29 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -2.02 Total: 6.24 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.43 Total: 7.90 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.58 Total: -47.25 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.14 Total: -22.39 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.37 -3.93 -36.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234339474.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.646 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds