Wall clock time and date at job start Mon Mar 30 2020 03:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00199 * 2 1 4 4 O 1.21483 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.48454 * 120.00050 * 180.27247 * 3 2 1 6 6 N 1.30671 * 126.40185 * 359.41376 * 5 3 2 7 7 O 1.21293 * 110.10446 * 179.86624 * 6 5 3 8 8 C 1.33686 * 110.01828 * 0.39925 * 7 6 5 9 9 C 1.50694 * 126.45001 * 179.75011 * 8 7 6 10 10 C 1.52998 * 109.47154 * 270.00335 * 9 8 7 11 11 H 1.08993 * 109.47481 * 54.99772 * 10 9 8 12 12 O 1.42901 * 109.46968 * 294.99365 * 10 9 8 13 13 C 1.50706 * 109.47329 * 174.99979 * 10 9 8 14 14 H 1.08000 * 119.99779 * 359.97438 * 13 10 9 15 15 C 1.37870 * 120.00190 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00411 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99873 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47257 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46709 * 120.00479 * 17 15 13 20 20 H 1.48496 * 109.47365 * 240.00123 * 17 15 13 21 21 N 1.30945 * 107.10683 * 359.75304 * 8 7 6 22 22 H 1.09001 * 109.47503 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47134 * 300.00670 * 1 2 3 24 24 H 1.08997 * 109.46691 * 60.00285 * 1 2 3 25 25 H 0.97001 * 120.00074 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46788 * 29.99858 * 9 8 7 27 27 H 1.08998 * 109.47692 * 150.00105 * 9 8 7 28 28 H 0.96699 * 114.00274 * 300.00276 * 12 10 9 29 29 H 0.96997 * 120.00852 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5315 2.2193 -0.0005 5 6 3.6234 1.1671 -0.0061 6 7 4.3989 0.1154 -0.0010 7 8 5.5631 0.4557 -0.0112 8 6 5.6499 1.7898 -0.0153 9 6 6.9176 2.6045 -0.0221 10 6 7.3519 2.8842 1.4180 11 1 7.4433 1.9427 1.9594 12 8 6.3760 3.7090 2.0581 13 6 8.6823 3.5921 1.4130 14 1 9.1696 3.8192 0.4764 15 6 9.2774 3.9496 2.6042 16 7 8.6844 3.6725 3.7448 17 14 10.9270 4.8263 2.5980 18 1 11.3797 5.0193 1.1969 19 1 10.7871 6.1486 3.2592 20 1 11.9250 4.0085 3.3329 21 7 4.4260 2.2554 -0.0121 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.9500 -0.8400 0.0004 26 1 7.7025 2.0507 -0.5372 27 1 6.7403 3.5482 -0.5380 28 1 6.2422 4.5651 1.6290 29 1 9.1032 3.9237 4.5829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234339474.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:52 Heat of formation + Delta-G solvation = -46.469586 kcal Electronic energy + Delta-G solvation = -16819.241945 eV Core-core repulsion = 13744.913514 eV Total energy + Delta-G solvation = -3074.328431 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.77519 -40.89042 -38.21554 -36.77146 -36.01359 -34.40310 -34.17712 -31.24727 -28.79342 -27.69159 -25.73742 -24.53499 -23.06850 -21.77152 -19.76846 -19.34464 -18.87972 -18.12274 -17.09661 -16.63979 -16.51221 -16.36692 -16.02945 -15.51295 -14.98901 -14.66568 -14.13843 -14.00612 -13.30726 -13.18275 -12.92384 -12.86632 -12.74313 -12.53492 -12.28280 -11.99330 -11.80833 -11.58204 -10.97511 -10.70014 -10.45162 -10.18953 -8.11794 -6.37576 -0.36700 0.54451 1.42836 1.46737 1.49039 1.60092 1.64401 1.81915 2.43725 2.64053 2.94727 3.16837 3.78884 4.13732 4.35648 4.38249 4.38997 4.50573 4.55311 4.73581 4.87301 4.99653 5.04457 5.57343 5.72354 6.01353 6.04212 6.69647 6.74146 6.86560 7.35904 7.53394 8.93586 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.058065 B = 0.004831 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.101937 B = 5795.034773 C = 5957.796955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.698 5.698 3 C 0.608 3.392 4 O -0.539 6.539 5 C 0.116 3.884 6 N -0.353 5.353 7 O 0.089 5.911 8 C 0.225 3.775 9 C -0.048 4.048 10 C 0.232 3.768 11 H 0.029 0.971 12 O -0.581 6.581 13 C -0.576 4.576 14 H 0.080 0.920 15 C 0.023 3.977 16 N -0.903 5.903 17 Si 0.964 3.036 18 H -0.254 1.254 19 H -0.287 1.287 20 H -0.283 1.283 21 N -0.473 5.473 22 H 0.125 0.875 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.421 0.579 26 H 0.134 0.866 27 H 0.122 0.878 28 H 0.361 0.639 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -8.636 -9.416 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.350 5.350 3 C 0.389 3.611 4 O -0.413 6.413 5 C -0.159 4.159 6 N -0.062 5.062 7 O 0.024 5.976 8 C 0.005 3.995 9 C -0.087 4.087 10 C 0.173 3.827 11 H 0.047 0.953 12 O -0.386 6.386 13 C -0.614 4.614 14 H 0.098 0.902 15 C -0.179 4.179 16 N -0.540 5.540 17 Si 0.789 3.211 18 H -0.178 1.178 19 H -0.213 1.213 20 H -0.209 1.209 21 N -0.207 5.207 22 H 0.144 0.856 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.258 0.742 26 H 0.152 0.848 27 H 0.140 0.860 28 H 0.206 0.794 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.271 -8.898 -8.834 16.209 hybrid contribution 1.257 0.596 0.172 1.402 sum -9.014 -8.302 -8.661 15.007 Atomic orbital electron populations 1.21960 0.75696 1.05622 1.02636 1.45536 1.09571 1.07053 1.72868 1.16433 0.81869 0.85290 0.77463 1.90805 1.67924 1.32527 1.50025 1.25817 0.99054 0.85256 1.05750 1.74739 0.89759 1.23139 1.18546 1.85238 1.21583 1.25789 1.64978 1.29514 0.97349 0.80858 0.91744 1.21460 0.86569 0.98326 1.02374 1.19315 0.86770 0.91077 0.85535 0.95270 1.86555 1.61952 1.31162 1.58921 1.21987 1.05370 1.40443 0.93606 0.90167 1.25935 1.00916 0.95842 0.95234 1.70236 1.39601 1.46126 0.98058 0.85441 0.79097 0.77702 0.78891 1.17789 1.21298 1.20943 1.72061 1.00067 1.28505 1.20025 0.85622 0.92170 0.91663 0.74249 0.84843 0.85995 0.79352 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.70 127.77 1.37 2.56 15 2 N -0.70 -14.84 5.71 -486.88 -2.78 -17.62 15 3 C 0.61 19.71 7.85 86.97 0.68 20.40 15 4 O -0.54 -21.10 17.10 -3.66 -0.06 -21.16 15 5 C 0.12 4.13 8.01 137.33 1.10 5.23 15 6 N -0.35 -11.53 11.89 -59.35 -0.71 -12.24 15 7 O 0.09 3.01 11.29 74.45 0.84 3.85 15 8 C 0.22 8.13 7.52 88.36 0.66 8.79 15 9 C -0.05 -1.66 5.46 29.85 0.16 -1.50 15 10 C 0.23 10.80 2.81 29.85 0.08 10.89 15 11 H 0.03 1.55 8.14 -2.39 -0.02 1.53 15 12 O -0.58 -29.49 12.48 -148.98 -1.86 -31.35 15 13 C -0.58 -28.41 8.76 25.60 0.22 -28.19 15 14 H 0.08 3.61 7.74 -2.91 -0.02 3.59 15 15 C 0.02 1.22 5.40 84.65 0.46 1.68 15 16 N -0.90 -52.32 12.84 21.44 0.28 -52.04 15 17 Si 0.96 40.93 29.54 68.60 2.03 42.96 15 18 H -0.25 -10.02 7.11 99.48 0.71 -9.31 15 19 H -0.29 -12.29 7.11 99.48 0.71 -11.58 15 20 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 21 N -0.47 -18.84 11.57 -302.78 -3.50 -22.34 15 22 H 0.13 0.72 8.14 -2.39 -0.02 0.70 15 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 15 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 15 25 H 0.42 7.08 8.56 -92.71 -0.79 6.28 15 26 H 0.13 3.77 8.14 -2.39 -0.02 3.75 15 27 H 0.12 3.83 8.14 -2.39 -0.02 3.81 15 28 H 0.36 16.25 9.04 -74.06 -0.67 15.58 15 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 Total: -1.00 -70.23 272.77 -1.28 -71.50 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.25 Total: 18.59 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 4.74 Total: 19.85 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -6.71 Total: -104.24 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -1.08 Total: -48.66 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -70.23 -1.28 -71.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234339474.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.033 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds