Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38605 * 119.81329 * 2 1 4 4 C 1.37968 * 120.44042 * 179.69903 * 3 2 1 5 5 C 1.39042 * 120.05386 * 0.60236 * 4 3 2 6 6 N 1.38694 * 120.19000 * 179.69747 * 5 4 3 7 7 C 1.36798 * 120.00180 * 89.72536 * 6 5 4 8 8 H 1.07994 * 119.99957 * 185.28259 * 7 6 5 9 9 C 1.38844 * 119.99674 * 5.00833 * 7 6 5 10 10 N 1.31543 * 119.99998 * 343.97600 * 9 7 6 11 11 Si 1.86798 * 119.99996 * 163.98159 * 9 7 6 12 12 H 1.48498 * 109.47002 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47466 * 119.99880 * 11 9 7 14 14 H 1.48500 * 109.47031 * 239.99919 * 11 9 7 15 15 C 1.46501 * 120.00015 * 269.72886 * 6 5 4 16 16 C 1.47197 * 109.47226 * 264.53531 * 15 6 5 17 17 N 6.34547 * 151.11229 * 218.44413 * 2 1 3 18 18 C 1.40529 * 119.62689 * 359.42862 * 5 4 3 19 19 C 1.43199 * 120.21942 * 180.25077 * 18 5 4 20 20 N 4.80177 * 134.57081 * 180.02562 * 2 1 3 21 21 C 1.37832 * 119.81125 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.47002 * 269.97414 * 1 2 3 23 23 H 1.08999 * 109.47538 * 29.97196 * 1 2 3 24 24 H 1.08999 * 109.47142 * 149.97747 * 1 2 3 25 25 H 1.08003 * 119.78111 * 0.03168 * 3 2 1 26 26 H 1.07993 * 119.97833 * 180.32999 * 4 3 2 27 27 H 0.97000 * 120.00206 * 180.02562 * 10 9 7 28 28 H 1.08996 * 109.46936 * 24.54294 * 15 6 5 29 29 H 1.09006 * 109.46858 * 144.53778 * 15 6 5 30 30 H 1.08001 * 120.03335 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2026 0.0000 4 6 3.5757 1.2177 0.0062 5 6 4.2852 0.0220 0.0000 6 7 5.6721 0.0339 -0.0001 7 6 6.3562 0.0393 1.1845 8 1 7.4319 0.1347 1.1865 9 6 5.6669 -0.0721 2.3846 10 7 4.3679 0.1324 2.4185 11 14 6.5842 -0.5123 3.9512 12 1 8.0267 -0.6904 3.6467 13 1 6.4186 0.5785 4.9450 14 1 6.0365 -1.7758 4.5071 15 6 6.4045 0.0408 -1.2689 16 6 6.7762 -1.3374 -1.6284 17 7 7.0629 -2.4009 -1.9060 18 6 3.5892 -1.1988 -0.0006 19 6 4.3072 -2.4378 -0.0016 20 7 4.8769 -3.4207 -0.0015 21 6 2.1923 -1.1959 -0.0005 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6495 2.1341 0.0005 26 1 4.1050 2.1590 0.0116 27 1 3.8864 0.0550 3.2570 28 1 5.7729 0.4626 -2.0507 29 1 7.3060 0.6448 -1.1647 30 1 1.6497 -2.1298 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235779011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = 106.328535 kcal Electronic energy + Delta-G solvation = -16691.990476 eV Core-core repulsion = 14067.429884 eV Total energy + Delta-G solvation = -2624.560593 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.98030 -36.44525 -35.33202 -35.04306 -31.77467 -31.17615 -30.28387 -27.32603 -25.98480 -23.47028 -22.53976 -20.65973 -18.06432 -17.18799 -16.82208 -15.56067 -14.74255 -14.66033 -13.96926 -13.71917 -13.36846 -13.20525 -12.76167 -12.53393 -12.33094 -12.24632 -12.01646 -11.91093 -11.47810 -11.31424 -11.07435 -10.94514 -10.83972 -10.61830 -10.48839 -10.22988 -10.09968 -9.16194 -7.94175 -7.65479 -7.53039 -5.93996 -3.56801 1.87792 2.35025 3.24426 3.34536 3.36267 3.47097 3.56548 3.78074 3.99695 4.30315 4.79158 4.83249 5.00507 5.13888 5.24124 5.55476 5.65516 5.82967 5.86964 6.00733 6.04770 6.11736 6.24501 6.47493 6.66360 6.88862 7.09766 7.33502 7.47075 7.58146 7.65957 7.96712 8.36101 8.59638 8.92635 9.37999 9.76498 10.93613 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.012247 C = 0.009342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.270581 B = 2285.770567 C = 2996.426501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.127 4.127 3 C -0.087 4.087 4 C -0.097 4.097 5 C 0.332 3.668 6 N -0.559 5.559 7 C -0.282 4.282 8 H 0.091 0.909 9 C 0.016 3.984 10 N -0.877 5.877 11 Si 0.906 3.094 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.287 1.287 15 C 0.235 3.765 16 C 0.183 3.817 17 N -0.452 5.452 18 C -0.052 4.052 19 C 0.277 3.723 20 N -0.453 5.453 21 C -0.070 4.070 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.264 0.736 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 6.741 -5.037 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.127 4.127 3 C -0.107 4.107 4 C -0.118 4.118 5 C 0.234 3.766 6 N -0.276 5.276 7 C -0.408 4.408 8 H 0.108 0.892 9 C -0.185 4.185 10 N -0.517 5.517 11 Si 0.735 3.265 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.213 1.213 15 C 0.105 3.895 16 C -0.138 4.138 17 N -0.131 5.131 18 C -0.058 4.058 19 C -0.037 4.037 20 N -0.130 5.130 21 C -0.092 4.092 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.845 3.659 -5.231 8.014 hybrid contribution 0.115 0.368 1.488 1.537 sum -4.730 4.026 -3.743 7.252 Atomic orbital electron populations 1.20626 0.92288 1.01489 1.01409 1.19302 0.94844 0.92855 1.05744 1.20746 0.94035 0.96329 0.99569 1.21102 0.93142 0.97462 1.00095 1.16750 0.83576 0.89757 0.86511 1.41404 0.99816 1.84516 1.01820 1.19328 0.91648 1.47967 0.81810 0.89169 1.24866 0.95817 0.99460 0.98345 1.69736 1.06405 1.49513 1.26082 0.86150 0.79386 0.78160 0.82777 1.20120 1.21268 1.21327 1.18653 0.98231 0.84177 0.88401 1.31451 0.92833 0.97146 0.92365 1.81039 1.09706 1.12531 1.09795 1.16623 0.91828 0.87344 1.10006 1.25730 0.92676 0.92631 0.92622 1.81078 1.08502 1.12750 1.10631 1.20509 0.91614 0.97155 0.99898 0.92170 0.92373 0.92610 0.87372 0.86554 0.92446 0.88620 0.87966 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.00 36.01 0.36 -0.90 16 2 C -0.13 -2.05 5.88 -104.63 -0.61 -2.67 16 3 C -0.09 -1.41 9.67 -39.55 -0.38 -1.80 16 4 C -0.10 -1.79 8.90 -39.38 -0.35 -2.14 16 5 C 0.33 6.87 2.82 -83.60 -0.24 6.63 16 6 N -0.56 -11.81 1.91 -116.00 -0.22 -12.03 16 7 C -0.28 -6.74 9.73 -15.11 -0.15 -6.88 16 8 H 0.09 2.12 7.88 -52.49 -0.41 1.71 16 9 C 0.02 0.40 5.37 -17.45 -0.09 0.30 16 10 N -0.88 -21.96 9.60 55.49 0.53 -21.43 16 11 Si 0.91 20.94 29.58 -169.99 -5.03 15.91 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.24 3.94 6.14 -6.83 -0.04 3.90 16 16 C 0.18 3.67 14.44 -20.76 -0.30 3.37 16 17 N -0.45 -10.22 18.41 42.15 0.78 -9.45 16 18 C -0.05 -1.10 5.12 -106.56 -0.55 -1.64 16 19 C 0.28 6.59 13.54 -22.47 -0.30 6.28 16 20 N -0.45 -11.53 18.41 41.84 0.77 -10.76 16 21 C -0.07 -1.29 9.39 -39.19 -0.37 -1.66 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 24 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 26 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 27 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.10 1.27 8.00 -51.93 -0.42 0.85 16 29 H 0.10 1.45 8.08 -51.93 -0.42 1.03 16 30 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 280.97 15.07 4.23 4.23 Total: -1.00 -29.90 280.97 -4.87 -34.77 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -2.91 Total: -4.05 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -3.02 Total: 2.80 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 1.86 Total: -53.66 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.90 -4.87 -34.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235779011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.101 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds