Wall clock time and date at job start Mon Mar 30 2020 03:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38605 * 119.81329 * 2 1 4 4 C 1.37968 * 120.44042 * 179.69903 * 3 2 1 5 5 C 1.39042 * 120.05386 * 0.60236 * 4 3 2 6 6 N 1.38694 * 120.19000 * 179.69747 * 5 4 3 7 7 C 1.36798 * 120.00180 * 89.72536 * 6 5 4 8 8 H 1.07994 * 119.99957 * 185.28259 * 7 6 5 9 9 C 1.38844 * 119.99674 * 5.00833 * 7 6 5 10 10 N 1.31543 * 119.99998 * 343.97600 * 9 7 6 11 11 Si 1.86798 * 119.99996 * 163.98159 * 9 7 6 12 12 H 1.48498 * 109.47002 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47466 * 119.99880 * 11 9 7 14 14 H 1.48500 * 109.47031 * 239.99919 * 11 9 7 15 15 C 1.46501 * 120.00015 * 269.72886 * 6 5 4 16 16 C 1.47197 * 109.47226 * 264.53531 * 15 6 5 17 17 N 6.34547 * 151.11229 * 218.44413 * 2 1 3 18 18 C 1.40529 * 119.62689 * 359.42862 * 5 4 3 19 19 C 1.43199 * 120.21942 * 180.25077 * 18 5 4 20 20 N 4.80177 * 134.57081 * 180.02562 * 2 1 3 21 21 C 1.37832 * 119.81125 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.47002 * 269.97414 * 1 2 3 23 23 H 1.08999 * 109.47538 * 29.97196 * 1 2 3 24 24 H 1.08999 * 109.47142 * 149.97747 * 1 2 3 25 25 H 1.08003 * 119.78111 * 0.03168 * 3 2 1 26 26 H 1.07993 * 119.97833 * 180.32999 * 4 3 2 27 27 H 0.97000 * 120.00206 * 180.02562 * 10 9 7 28 28 H 1.08996 * 109.46936 * 24.54294 * 15 6 5 29 29 H 1.09006 * 109.46858 * 144.53778 * 15 6 5 30 30 H 1.08001 * 120.03335 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2026 0.0000 4 6 3.5757 1.2177 0.0062 5 6 4.2852 0.0220 0.0000 6 7 5.6721 0.0339 -0.0001 7 6 6.3562 0.0393 1.1845 8 1 7.4319 0.1347 1.1865 9 6 5.6669 -0.0721 2.3846 10 7 4.3679 0.1324 2.4185 11 14 6.5842 -0.5123 3.9512 12 1 8.0267 -0.6904 3.6467 13 1 6.4186 0.5785 4.9450 14 1 6.0365 -1.7758 4.5071 15 6 6.4045 0.0408 -1.2689 16 6 6.7762 -1.3374 -1.6284 17 7 7.0629 -2.4009 -1.9060 18 6 3.5892 -1.1988 -0.0006 19 6 4.3072 -2.4378 -0.0016 20 7 4.8769 -3.4207 -0.0015 21 6 2.1923 -1.1959 -0.0005 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6495 2.1341 0.0005 26 1 4.1050 2.1590 0.0116 27 1 3.8864 0.0550 3.2570 28 1 5.7729 0.4626 -2.0507 29 1 7.3060 0.6448 -1.1647 30 1 1.6497 -2.1298 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235779011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:22 Heat of formation + Delta-G solvation = 90.660554 kcal Electronic energy + Delta-G solvation = -16692.669891 eV Core-core repulsion = 14067.429884 eV Total energy + Delta-G solvation = -2625.240007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.44953 -37.95191 -37.15409 -36.65659 -33.52379 -32.51122 -31.71627 -28.78800 -27.43724 -25.00886 -24.01265 -22.13437 -19.72257 -18.74119 -18.30540 -17.10774 -16.35922 -16.19904 -15.67018 -15.12636 -14.84154 -14.62268 -14.34020 -13.98193 -13.88766 -13.84025 -13.64487 -13.47329 -13.08147 -12.91864 -12.72328 -12.49874 -12.38553 -12.06219 -11.89696 -11.88734 -11.72586 -10.92415 -9.40048 -9.28048 -9.06069 -7.72224 -5.37967 0.37492 0.96927 1.39087 1.48343 1.50652 1.85007 1.97651 2.03038 2.35288 2.48816 3.20816 3.25738 3.43357 3.55186 3.62655 4.35179 4.42937 4.60664 4.72440 4.79282 4.88996 5.10445 5.13348 5.17823 5.37047 5.55340 5.61180 5.75680 6.00547 6.06815 6.14192 6.43948 6.79946 6.83485 7.15439 7.70291 8.01282 9.06093 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.012247 C = 0.009342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.270581 B = 2285.770567 C = 2996.426501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.118 4.118 3 C -0.077 4.077 4 C -0.102 4.102 5 C 0.315 3.685 6 N -0.569 5.569 7 C -0.278 4.278 8 H 0.090 0.910 9 C -0.021 4.021 10 N -0.883 5.883 11 Si 0.938 3.062 12 H -0.277 1.277 13 H -0.280 1.280 14 H -0.311 1.311 15 C 0.229 3.771 16 C 0.200 3.800 17 N -0.505 5.505 18 C -0.084 4.084 19 C 0.288 3.712 20 N -0.502 5.502 21 C -0.079 4.079 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.144 0.856 26 H 0.125 0.875 27 H 0.254 0.746 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 8.969 -5.731 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.122 4.122 5 C 0.217 3.783 6 N -0.286 5.286 7 C -0.405 4.405 8 H 0.107 0.893 9 C -0.220 4.220 10 N -0.525 5.525 11 Si 0.768 3.232 12 H -0.202 1.202 13 H -0.206 1.206 14 H -0.240 1.240 15 C 0.101 3.899 16 C -0.119 4.119 17 N -0.185 5.185 18 C -0.090 4.090 19 C -0.025 4.025 20 N -0.180 5.180 21 C -0.100 4.100 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.085 0.915 25 H 0.162 0.838 26 H 0.143 0.857 27 H 0.065 0.935 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.432 5.902 -5.948 10.563 hybrid contribution 0.529 -0.268 1.659 1.762 sum -5.904 5.634 -4.288 9.219 Atomic orbital electron populations 1.20696 0.89230 1.03411 1.02305 1.19758 0.96998 0.91903 1.03230 1.21177 0.93433 0.97875 0.97145 1.21229 0.94152 0.96817 1.00003 1.16980 0.83504 0.90221 0.87560 1.41525 1.00400 1.84385 1.02253 1.19475 0.91844 1.46287 0.82923 0.89253 1.25221 0.96411 1.00773 0.99564 1.69856 1.06500 1.50678 1.25501 0.85653 0.78634 0.76909 0.81976 1.20213 1.20622 1.23973 1.19272 1.00116 0.82602 0.87943 1.32144 0.91362 0.97469 0.90972 1.81049 1.11693 1.14160 1.11571 1.16928 0.93036 0.86432 1.12639 1.26366 0.91920 0.92849 0.91331 1.81064 1.09903 1.14181 1.12838 1.20759 0.90660 0.98752 0.99811 0.91618 0.89829 0.91490 0.83786 0.85678 0.93453 0.84482 0.84832 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.00 71.24 0.71 -1.32 16 2 C -0.12 -3.41 5.88 -19.87 -0.12 -3.53 16 3 C -0.08 -2.18 9.67 22.29 0.22 -1.97 16 4 C -0.10 -3.43 8.90 22.40 0.20 -3.23 16 5 C 0.31 12.47 2.82 38.81 0.11 12.58 16 6 N -0.57 -23.12 1.91 -520.92 -0.99 -24.11 16 7 C -0.28 -13.03 9.73 84.06 0.82 -12.21 16 8 H 0.09 4.11 7.88 -2.91 -0.02 4.09 16 9 C -0.02 -1.03 5.37 84.88 0.46 -0.57 16 10 N -0.88 -43.59 9.60 21.65 0.21 -43.39 16 11 Si 0.94 43.03 29.58 68.60 2.03 45.06 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 15 C 0.23 7.15 6.14 84.57 0.52 7.67 16 16 C 0.20 7.89 14.44 89.44 1.29 9.18 16 17 N -0.50 -23.05 18.41 20.00 0.37 -22.68 16 18 C -0.08 -3.49 5.12 -21.12 -0.11 -3.60 16 19 C 0.29 13.80 13.54 88.33 1.20 15.00 16 20 N -0.50 -26.18 18.41 19.00 0.35 -25.83 16 21 C -0.08 -2.74 9.39 22.53 0.21 -2.53 16 22 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 23 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 24 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 25 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 26 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 27 H 0.25 12.70 8.31 -92.71 -0.77 11.93 16 28 H 0.14 3.16 8.00 -2.39 -0.02 3.14 16 29 H 0.13 3.36 8.08 -2.38 -0.02 3.34 16 30 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -65.39 280.97 8.63 -56.76 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: 1.16 Total: -1.28 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 5.50 Total: 15.47 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -0.07 Total: -116.01 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -65.39 8.63 -56.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235779011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.421 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds