Wall clock time and date at job start Mon Mar 30 2020 03:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 H 1.08994 * 110.43865 * 61.08647 * 13 11 10 15 15 C 1.54892 * 110.48589 * 298.54700 * 13 11 10 16 16 C 1.54887 * 102.75302 * 203.38097 * 15 13 11 17 17 C 1.54272 * 104.19294 * 37.93811 * 16 15 13 18 18 H 1.09002 * 110.02665 * 95.67710 * 17 16 15 19 19 C 1.50696 * 110.03191 * 217.05933 * 17 16 15 20 20 O 1.20829 * 120.00247 * 118.55165 * 19 17 16 21 21 O 1.34232 * 120.00210 * 298.54666 * 19 17 16 22 22 C 1.53876 * 106.60007 * 336.39430 * 17 16 15 23 23 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 27 27 H 1.09007 * 110.75473 * 321.69758 * 15 13 11 28 28 H 1.08998 * 110.75955 * 85.06186 * 15 13 11 29 29 H 1.08996 * 110.48818 * 156.61986 * 16 15 13 30 30 H 1.09006 * 110.48492 * 279.26669 * 16 15 13 31 31 H 0.96700 * 117.00556 * 179.97438 * 21 19 17 32 32 H 1.08995 * 110.03136 * 240.71613 * 22 17 16 33 33 H 1.08994 * 110.03243 * 119.28337 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 7 4.0000 -2.5751 -0.0105 11 6 5.3250 -2.8214 -0.0161 12 8 6.1131 -1.8996 -0.0167 13 6 5.8274 -4.2422 -0.0215 14 1 5.4854 -4.7634 -0.9156 15 6 5.3591 -4.9876 1.2529 16 6 6.4033 -6.1236 1.3877 17 6 7.7334 -5.4670 0.9638 18 1 8.2765 -5.1220 1.8436 19 6 8.5730 -6.4527 0.1928 20 8 8.8781 -6.2204 -0.9530 21 8 8.9821 -7.5889 0.7790 22 6 7.3672 -4.2708 0.0678 23 1 -0.4850 0.8400 -0.0004 24 1 3.8713 -0.6783 -0.8962 25 1 3.8786 -0.6819 0.8837 26 1 3.3696 -3.3124 -0.0097 27 1 5.3917 -4.3281 2.1202 28 1 4.3584 -5.3972 1.1152 29 1 6.4603 -6.4689 2.4200 30 1 6.1563 -6.9499 0.7211 31 1 9.5183 -8.1904 0.2445 32 1 7.7963 -4.4030 -0.9254 33 1 7.7326 -3.3453 0.5127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236433731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:15 Heat of formation + Delta-G solvation = -149.707378 kcal Electronic energy + Delta-G solvation = -17051.144407 eV Core-core repulsion = 14075.879593 eV Total energy + Delta-G solvation = -2975.264814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.80227 -39.33978 -37.03267 -36.22934 -34.32110 -32.38122 -30.27593 -28.89823 -27.71551 -23.85438 -22.34894 -21.30068 -20.18403 -19.28912 -18.37215 -17.53211 -17.05132 -16.28574 -15.90135 -15.23899 -14.78589 -14.45127 -14.19129 -13.69691 -13.48317 -13.10697 -12.51485 -12.17672 -12.02757 -11.84362 -11.76503 -11.51185 -11.28125 -11.00165 -10.93843 -10.77348 -10.69086 -10.52733 -9.97480 -9.50183 -9.15598 -8.78408 -8.15410 -6.22158 -4.24461 1.99710 2.80713 3.21002 3.27007 3.33249 3.41540 3.91298 4.31768 4.32854 4.37319 4.74242 5.08532 5.13223 5.19398 5.29106 5.30639 5.38809 5.46516 5.62209 5.77440 5.89223 6.04429 6.14240 6.24147 6.36850 6.80821 7.06672 7.22350 7.39005 7.67233 8.12919 8.51459 8.74383 8.93036 9.38150 10.89800 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.056897 B = 0.004509 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.999337 B = 6207.812360 C = 6482.589794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.703 5.703 11 C 0.507 3.493 12 O -0.558 6.558 13 C -0.115 4.115 14 H 0.100 0.900 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.087 4.087 18 H 0.113 0.887 19 C 0.484 3.516 20 O -0.512 6.512 21 O -0.517 6.517 22 C -0.108 4.108 23 H 0.268 0.732 24 H 0.020 0.980 25 H 0.025 0.975 26 H 0.397 0.603 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.408 0.592 32 H 0.091 0.909 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.831 -14.675 3.377 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.351 5.351 11 C 0.292 3.708 12 O -0.437 6.437 13 C -0.136 4.136 14 H 0.118 0.882 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.106 4.106 18 H 0.131 0.869 19 C 0.326 3.674 20 O -0.400 6.400 21 O -0.328 6.328 22 C -0.145 4.145 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.230 0.770 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.266 0.734 32 H 0.110 0.890 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.040 -13.528 3.295 19.774 hybrid contribution 0.352 0.115 -0.453 0.585 sum 14.392 -13.414 2.842 19.878 Atomic orbital electron populations 1.69883 1.06213 1.27431 1.49471 1.24799 0.94787 0.99179 0.93858 0.86814 0.80553 0.83233 0.79064 1.19856 1.20899 1.18522 1.21095 0.88536 0.95217 1.53288 0.90253 1.19501 0.95245 0.78809 0.96766 1.46174 1.05716 1.10975 1.72254 1.20329 0.83105 0.90451 0.76918 1.90632 1.55553 1.46282 1.51271 1.22146 0.96614 0.94491 1.00361 0.88194 1.22534 0.98996 0.96502 0.97240 1.22315 0.91874 0.97978 1.02365 1.21751 0.96076 0.93328 0.99424 0.86918 1.23562 0.77310 0.80694 0.85813 1.90711 1.54238 1.75945 1.19104 1.84556 1.66799 1.31901 1.49582 1.22159 0.94227 0.96800 1.01356 0.92262 0.96194 0.95702 0.76987 0.90175 0.89969 0.89953 0.90889 0.73407 0.89029 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.43 27.46 -169.99 -4.67 16.76 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.33 6.55 56.52 0.37 -5.96 16 7 C -0.54 -14.83 9.83 -34.44 -0.34 -15.16 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.37 4.50 -5.19 -0.02 5.34 16 10 N -0.70 -14.01 5.49 -61.47 -0.34 -14.35 16 11 C 0.51 9.45 7.15 -10.98 -0.08 9.38 16 12 O -0.56 -12.53 15.46 5.56 0.09 -12.44 16 13 C -0.11 -1.54 3.25 -90.11 -0.29 -1.83 16 14 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.11 -1.22 6.26 -24.74 -0.15 -1.37 16 16 C -0.11 -0.93 6.33 -25.07 -0.16 -1.09 16 17 C -0.09 -0.86 3.41 -90.65 -0.31 -1.17 16 18 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 19 C 0.48 5.07 7.48 36.00 0.27 5.34 16 20 O -0.51 -7.07 15.97 -18.75 -0.30 -7.37 16 21 O -0.52 -3.93 13.39 -39.26 -0.53 -4.46 16 22 C -0.11 -1.40 5.75 -25.61 -0.15 -1.55 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.52 7.56 -51.93 -0.39 0.12 16 25 H 0.03 0.64 7.21 -51.93 -0.37 0.27 16 26 H 0.40 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 31 H 0.41 1.44 9.10 45.56 0.41 1.86 16 32 H 0.09 1.30 6.40 -51.93 -0.33 0.97 16 33 H 0.10 1.39 6.90 -51.93 -0.36 1.03 16 LS Contribution 282.02 15.07 4.25 4.25 Total: -1.00 -34.04 282.02 -5.53 -39.57 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.48 Total: 3.71 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.33 Total: -0.03 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.44 Total: -39.99 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.74 Total: -24.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.04 -5.53 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236433731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.142 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds