Wall clock time and date at job start Mon Mar 30 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48495 * 109.47294 * 270.00128 * 3 2 1 5 5 H 1.48507 * 109.47209 * 30.00240 * 3 2 1 6 6 H 1.48496 * 109.46911 * 150.00173 * 3 2 1 7 7 C 1.37871 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00504 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00036 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47209 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99949 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99688 * 359.97438 * 11 10 9 13 13 C 1.50694 * 119.99892 * 179.97438 * 11 10 9 14 14 H 1.09004 * 110.81757 * 56.66667 * 13 11 10 15 15 C 1.54882 * 110.75918 * 293.32599 * 13 11 10 16 16 C 1.54268 * 104.19992 * 203.74378 * 15 13 11 17 17 C 1.53876 * 106.59607 * 23.60931 * 16 15 13 18 18 H 1.08998 * 110.03805 * 240.71854 * 17 16 15 19 19 C 1.50698 * 110.03304 * 119.28364 * 17 16 15 20 20 O 1.20827 * 120.00292 * 242.83489 * 19 17 16 21 21 O 1.34232 * 120.00087 * 62.83566 * 19 17 16 22 22 C 1.54268 * 106.59992 * 0.02562 * 17 16 15 23 23 H 0.97006 * 119.99453 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46515 * 60.00279 * 9 7 2 25 25 H 1.09003 * 109.47055 * 300.00523 * 9 7 2 26 26 H 0.97003 * 120.00102 * 359.97438 * 10 9 7 27 27 H 1.09003 * 110.48391 * 322.42126 * 15 13 11 28 28 H 1.09004 * 110.48801 * 85.06667 * 15 13 11 29 29 H 1.08994 * 110.03288 * 264.32894 * 16 15 13 30 30 H 1.09000 * 110.07311 * 142.91218 * 16 15 13 31 31 H 0.96698 * 116.99953 * 179.97438 * 21 19 17 32 32 H 1.08999 * 110.49069 * 217.71506 * 22 17 16 33 33 H 1.08996 * 110.48777 * 95.06810 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 5.3249 -2.8217 -0.0024 12 8 6.1131 -1.8998 -0.0021 13 6 5.8272 -4.2425 -0.0030 14 1 5.4284 -4.7940 -0.8544 15 6 5.4695 -4.9517 1.3267 16 6 6.5112 -6.0834 1.4440 17 6 7.7232 -5.6546 0.5985 18 1 7.8968 -6.3772 -0.1989 19 6 8.9474 -5.5431 1.4703 20 8 9.4972 -4.4758 1.6061 21 8 9.4271 -6.6295 2.0958 22 6 7.3760 -4.2770 -0.0026 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6806 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.3694 -3.3126 -0.0021 27 1 5.5613 -4.2604 2.1644 28 1 4.4617 -5.3642 1.2799 29 1 6.0966 -7.0142 1.0570 30 1 6.8087 -6.2117 2.4848 31 1 10.2146 -6.5087 2.6438 32 1 7.7591 -4.1970 -1.0200 33 1 7.7759 -3.4771 0.6205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236448731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:16 Heat of formation + Delta-G solvation = -149.881180 kcal Electronic energy + Delta-G solvation = -17080.546303 eV Core-core repulsion = 14105.273953 eV Total energy + Delta-G solvation = -2975.272350 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76439 -39.29322 -37.03852 -36.19874 -34.29571 -32.36765 -30.27491 -28.93289 -27.71883 -23.83018 -22.41675 -21.23001 -20.06681 -19.51780 -18.18147 -17.64289 -16.76950 -16.31659 -15.84256 -15.27527 -14.96796 -14.35649 -14.28502 -13.64678 -13.38100 -13.08464 -12.52673 -12.17663 -12.02806 -11.94808 -11.70880 -11.46569 -11.20966 -11.03541 -10.90091 -10.82503 -10.74751 -10.46678 -9.96442 -9.49432 -9.14274 -8.77610 -8.13943 -6.21642 -4.23818 2.03971 2.81084 3.21536 3.27745 3.34032 3.43050 3.93424 4.33230 4.33987 4.36692 4.71021 5.09286 5.13957 5.20341 5.20680 5.29919 5.39063 5.44175 5.61144 5.74084 5.87128 6.03788 6.11630 6.24803 6.43243 6.82207 7.07883 7.23636 7.39985 7.71220 8.13865 8.52400 8.75106 8.94876 9.38894 10.90281 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.049991 B = 0.004671 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.970857 B = 5993.264424 C = 6322.028422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.704 5.704 11 C 0.506 3.494 12 O -0.555 6.555 13 C -0.115 4.115 14 H 0.103 0.897 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.087 4.087 18 H 0.112 0.888 19 C 0.481 3.519 20 O -0.507 6.507 21 O -0.519 6.519 22 C -0.097 4.097 23 H 0.267 0.733 24 H 0.025 0.975 25 H 0.020 0.980 26 H 0.396 0.604 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.408 0.592 32 H 0.077 0.923 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.820 -15.339 2.178 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.352 5.352 11 C 0.291 3.709 12 O -0.434 6.434 13 C -0.136 4.136 14 H 0.121 0.879 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.106 4.106 18 H 0.130 0.870 19 C 0.323 3.677 20 O -0.394 6.394 21 O -0.331 6.331 22 C -0.134 4.134 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.230 0.770 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.266 0.734 32 H 0.096 0.904 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.987 -14.281 1.975 20.087 hybrid contribution 0.523 0.592 0.305 0.847 sum 14.511 -13.689 2.280 20.078 Atomic orbital electron populations 1.69888 1.06208 1.27415 1.49503 1.24795 0.94786 0.99175 0.93854 0.86818 0.80590 0.83236 0.79067 1.19842 1.20898 1.18510 1.21094 0.88530 0.95208 1.53270 0.90249 1.19498 0.95230 0.78829 0.96775 1.46176 1.05701 1.10952 1.72376 1.20296 0.83109 0.90367 0.77114 1.90665 1.55577 1.46254 1.50902 1.22284 0.96715 0.94694 0.99919 0.87922 1.22379 0.99314 0.96875 0.96760 1.22097 0.93376 0.99243 0.99986 1.21749 0.90488 1.01291 0.97066 0.86994 1.23520 0.85135 0.81054 0.77967 1.90752 1.58840 1.29436 1.60387 1.84540 1.47776 1.40006 1.60751 1.22283 0.93820 0.94944 1.02402 0.92272 0.95736 0.96177 0.77016 0.90676 0.89979 0.89951 0.90889 0.73373 0.90401 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.54 -14.87 9.83 -34.44 -0.34 -15.21 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.41 4.50 -5.19 -0.02 5.38 16 10 N -0.70 -14.09 5.55 -61.47 -0.34 -14.43 16 11 C 0.51 9.55 7.13 -10.99 -0.08 9.47 16 12 O -0.55 -12.83 15.73 5.55 0.09 -12.74 16 13 C -0.11 -1.49 3.29 -89.77 -0.30 -1.79 16 14 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.12 -1.26 6.26 -25.07 -0.16 -1.42 16 16 C -0.11 -0.95 6.43 -25.61 -0.16 -1.11 16 17 C -0.09 -0.84 3.41 -90.65 -0.31 -1.15 16 18 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 19 C 0.48 5.32 7.37 36.00 0.27 5.59 16 20 O -0.51 -7.61 16.16 -18.75 -0.30 -7.91 16 21 O -0.52 -4.14 13.40 -39.26 -0.53 -4.66 16 22 C -0.10 -1.25 5.23 -25.05 -0.13 -1.38 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 25 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 26 H 0.40 6.88 8.32 -40.82 -0.34 6.54 16 27 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 31 H 0.41 1.65 9.10 45.56 0.41 2.06 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.69 6.17 -51.93 -0.32 1.37 16 LS Contribution 282.86 15.07 4.26 4.26 Total: -1.00 -34.85 282.86 -5.56 -40.42 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.52 Total: 3.39 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.33 Total: 0.48 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.43 Total: -40.14 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.74 Total: -25.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.85 -5.56 -40.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236448731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.464 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds