Wall clock time and date at job start Mon Mar 30 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48495 * 109.47294 * 270.00128 * 3 2 1 5 5 H 1.48507 * 109.47209 * 30.00240 * 3 2 1 6 6 H 1.48496 * 109.46911 * 150.00173 * 3 2 1 7 7 C 1.37871 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00504 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00036 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47209 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99949 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99688 * 359.97438 * 11 10 9 13 13 C 1.50694 * 119.99892 * 179.97438 * 11 10 9 14 14 H 1.09004 * 110.81757 * 56.66667 * 13 11 10 15 15 C 1.54882 * 110.75918 * 293.32599 * 13 11 10 16 16 C 1.54268 * 104.19992 * 203.74378 * 15 13 11 17 17 C 1.53876 * 106.59607 * 23.60931 * 16 15 13 18 18 H 1.08998 * 110.03805 * 240.71854 * 17 16 15 19 19 C 1.50698 * 110.03304 * 119.28364 * 17 16 15 20 20 O 1.20827 * 120.00292 * 242.83489 * 19 17 16 21 21 O 1.34232 * 120.00087 * 62.83566 * 19 17 16 22 22 C 1.54268 * 106.59992 * 0.02562 * 17 16 15 23 23 H 0.97006 * 119.99453 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46515 * 60.00279 * 9 7 2 25 25 H 1.09003 * 109.47055 * 300.00523 * 9 7 2 26 26 H 0.97003 * 120.00102 * 359.97438 * 10 9 7 27 27 H 1.09003 * 110.48391 * 322.42126 * 15 13 11 28 28 H 1.09004 * 110.48801 * 85.06667 * 15 13 11 29 29 H 1.08994 * 110.03288 * 264.32894 * 16 15 13 30 30 H 1.09000 * 110.07311 * 142.91218 * 16 15 13 31 31 H 0.96698 * 116.99953 * 179.97438 * 21 19 17 32 32 H 1.08999 * 110.49069 * 217.71506 * 22 17 16 33 33 H 1.08996 * 110.48777 * 95.06810 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 5.3249 -2.8217 -0.0024 12 8 6.1131 -1.8998 -0.0021 13 6 5.8272 -4.2425 -0.0030 14 1 5.4284 -4.7940 -0.8544 15 6 5.4695 -4.9517 1.3267 16 6 6.5112 -6.0834 1.4440 17 6 7.7232 -5.6546 0.5985 18 1 7.8968 -6.3772 -0.1989 19 6 8.9474 -5.5431 1.4703 20 8 9.4972 -4.4758 1.6061 21 8 9.4271 -6.6295 2.0958 22 6 7.3760 -4.2770 -0.0026 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6806 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.3694 -3.3126 -0.0021 27 1 5.5613 -4.2604 2.1644 28 1 4.4617 -5.3642 1.2799 29 1 6.0966 -7.0142 1.0570 30 1 6.8087 -6.2117 2.4848 31 1 10.2146 -6.5087 2.6438 32 1 7.7591 -4.1970 -1.0200 33 1 7.7759 -3.4771 0.6205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236448731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:16 Heat of formation + Delta-G solvation = -177.109816 kcal Electronic energy + Delta-G solvation = -17081.727025 eV Core-core repulsion = 14105.273953 eV Total energy + Delta-G solvation = -2976.453073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67800 -40.65697 -38.08644 -37.04298 -36.16132 -34.41456 -31.45266 -29.82751 -29.50179 -25.11763 -23.81298 -22.60838 -21.14084 -20.71155 -19.32081 -18.84970 -18.21646 -17.39703 -17.10113 -16.89605 -16.20611 -15.97599 -15.62961 -15.02573 -14.56263 -14.45344 -14.18276 -13.94416 -13.31740 -13.00898 -12.74590 -12.71522 -12.60013 -12.28514 -12.10405 -11.94435 -11.84570 -11.80575 -11.65553 -11.27865 -10.92613 -10.72039 -9.93087 -8.40910 -6.47325 1.21451 1.30831 1.33593 1.46062 1.72721 2.07506 2.26956 2.53031 2.94543 3.39009 3.45204 3.91972 4.19990 4.25876 4.33026 4.45329 4.50985 4.57623 4.69380 4.81888 4.92697 5.01370 5.09822 5.21258 5.25123 5.28996 5.34246 5.53764 5.64672 6.08684 6.53760 6.85688 7.00844 7.15633 7.43250 8.73680 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.049991 B = 0.004671 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.970857 B = 5993.264424 C = 6322.028422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.934 3.066 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.229 3.771 10 N -0.702 5.702 11 C 0.502 3.498 12 O -0.602 6.602 13 C -0.104 4.104 14 H 0.141 0.859 15 C -0.115 4.115 16 C -0.099 4.099 17 C -0.081 4.081 18 H 0.151 0.849 19 C 0.485 3.515 20 O -0.558 6.558 21 O -0.506 6.506 22 C -0.100 4.100 23 H 0.272 0.728 24 H 0.007 0.993 25 H 0.009 0.991 26 H 0.411 0.589 27 H 0.047 0.953 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.425 0.575 32 H 0.083 0.917 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.410 -17.548 1.891 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.105 3.895 10 N -0.351 5.351 11 C 0.290 3.710 12 O -0.484 6.484 13 C -0.125 4.125 14 H 0.159 0.841 15 C -0.153 4.153 16 C -0.137 4.137 17 C -0.099 4.099 18 H 0.168 0.832 19 C 0.329 3.671 20 O -0.449 6.449 21 O -0.320 6.320 22 C -0.138 4.138 23 H 0.082 0.918 24 H 0.025 0.975 25 H 0.027 0.973 26 H 0.247 0.753 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.092 0.908 31 H 0.287 0.713 32 H 0.102 0.898 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.578 -16.554 1.702 22.123 hybrid contribution 0.363 1.211 0.427 1.334 sum 14.941 -15.343 2.129 21.521 Atomic orbital electron populations 1.69977 1.07547 1.28566 1.50730 1.25550 0.95504 1.02469 0.93652 0.85908 0.79136 0.79696 0.79446 1.18945 1.19691 1.19001 1.21284 0.89782 0.94688 1.52485 0.91862 1.19091 0.93526 0.81450 0.95390 1.46020 1.06809 1.09508 1.72785 1.21376 0.81930 0.92629 0.75057 1.90644 1.56551 1.48545 1.52694 1.22343 0.96696 0.90727 1.02722 0.84088 1.22426 1.01547 0.97064 0.94275 1.22106 0.91886 0.99487 1.00202 1.21787 0.90355 0.99835 0.97972 0.83184 1.23809 0.85069 0.80682 0.77512 1.90751 1.60488 1.31403 1.62239 1.84492 1.48612 1.38366 1.60481 1.22216 0.93557 0.95866 1.02197 0.91832 0.97466 0.97273 0.75333 0.93400 0.87733 0.86272 0.90768 0.71315 0.89841 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 2 C 0.03 1.63 5.47 84.65 0.46 2.09 16 3 Si 0.93 44.70 27.47 68.60 1.88 46.59 16 4 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.81 6.54 99.48 0.65 -12.16 16 7 C -0.54 -30.07 9.83 25.60 0.25 -29.82 16 8 H 0.06 3.62 7.84 -2.91 -0.02 3.60 16 9 C 0.23 11.44 4.50 85.64 0.39 11.83 16 10 N -0.70 -27.88 5.55 -466.78 -2.59 -30.47 16 11 C 0.50 18.84 7.13 87.65 0.63 19.46 16 12 O -0.60 -28.58 15.73 -3.05 -0.05 -28.63 16 13 C -0.10 -2.49 3.29 -10.24 -0.03 -2.52 16 14 H 0.14 2.38 8.14 -2.38 -0.02 2.36 16 15 C -0.12 -2.22 6.26 31.67 0.20 -2.02 16 16 C -0.10 -1.32 6.43 31.32 0.20 -1.12 16 17 C -0.08 -1.31 3.41 -10.81 -0.04 -1.35 16 18 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 19 C 0.49 9.87 7.37 71.24 0.53 10.39 16 20 O -0.56 -16.86 16.16 21.96 0.35 -16.50 16 21 O -0.51 -6.63 13.40 -51.43 -0.69 -7.32 16 22 C -0.10 -2.48 5.23 31.68 0.17 -2.31 16 23 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 24 H 0.01 0.39 7.20 -2.39 -0.02 0.38 16 25 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 26 H 0.41 13.81 8.32 -92.71 -0.77 13.04 16 27 H 0.05 1.18 8.04 -2.39 -0.02 1.16 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 31 H 0.43 2.43 9.10 -74.06 -0.67 1.76 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.98 6.17 -2.39 -0.01 1.97 16 Total: -1.00 -78.14 282.86 1.60 -76.54 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -0.36 Total: 10.27 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 2.74 Total: 4.64 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -2.29 Total: -85.58 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.38 Total: -52.46 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -78.14 1.60 -76.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236448731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.566 kcal (2) G-P(sol) polarization free energy of solvation -78.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds