Wall clock time and date at job start Mon Mar 30 2020 03:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99802 * 2 1 4 4 H 1.48504 * 109.46821 * 269.99912 * 3 2 1 5 5 H 1.48498 * 109.47236 * 29.99981 * 3 2 1 6 6 H 1.48498 * 109.47330 * 150.00261 * 3 2 1 7 7 C 1.37879 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99992 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00289 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99541 * 359.97438 * 11 10 9 13 13 C 1.50691 * 120.00300 * 179.97438 * 11 10 9 14 14 H 1.09006 * 110.54304 * 298.84302 * 13 11 10 15 15 C 1.54892 * 110.48722 * 61.45451 * 13 11 10 16 16 C 1.54891 * 102.74959 * 156.62211 * 15 13 11 17 17 C 1.54266 * 104.31343 * 321.99283 * 16 15 13 18 18 H 1.09004 * 110.03276 * 264.39171 * 17 16 15 19 19 C 1.50693 * 110.03608 * 142.96127 * 17 16 15 20 20 O 1.20825 * 120.00361 * 241.45838 * 19 17 16 21 21 O 1.34227 * 119.99907 * 61.45083 * 19 17 16 22 22 C 1.54224 * 106.42656 * 23.64256 * 17 16 15 23 23 H 0.97002 * 120.00022 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47379 * 59.99157 * 9 7 2 25 25 H 1.09008 * 109.46440 * 299.99811 * 9 7 2 26 26 H 0.96998 * 119.99750 * 359.97438 * 10 9 7 27 27 H 1.09000 * 110.75513 * 38.31071 * 15 13 11 28 28 H 1.09002 * 110.75596 * 274.93781 * 15 13 11 29 29 H 1.09002 * 110.48740 * 80.73781 * 16 15 13 30 30 H 1.08998 * 110.48604 * 203.24665 * 16 15 13 31 31 H 0.96705 * 117.00335 * 180.02562 * 21 19 17 32 32 H 1.09009 * 110.00234 * 240.69061 * 22 17 16 33 33 H 1.08999 * 110.02130 * 119.28481 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5615 -5.1049 0.0020 13 6 2.7331 -6.0287 0.0005 14 1 3.3553 -5.9996 -0.8941 15 6 3.6134 -5.9900 1.2744 16 6 4.0751 -7.4617 1.4156 17 6 2.8424 -8.2900 0.9981 18 1 2.2733 -8.5831 1.8804 19 6 3.2774 -9.5136 0.2337 20 8 2.9224 -9.6689 -0.9107 21 8 4.0592 -10.4311 0.8242 22 6 1.9881 -7.3761 0.0962 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8895 25 1 0.6241 -2.5566 0.8904 26 1 3.1567 -3.4354 0.0002 27 1 3.0262 -5.6846 2.1405 28 1 4.4683 -5.3288 1.1332 29 1 4.9140 -7.6640 0.7496 30 1 4.3484 -7.6784 2.4483 31 1 4.3127 -11.1989 0.2937 32 1 1.0040 -7.2279 0.5410 33 1 1.8876 -7.8185 -0.8949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236452438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:18 Heat of formation + Delta-G solvation = -153.456107 kcal Electronic energy + Delta-G solvation = -16999.721117 eV Core-core repulsion = 14024.293746 eV Total energy + Delta-G solvation = -2975.427371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.74817 -39.21128 -36.92978 -36.18782 -34.18936 -32.34664 -30.12261 -28.82772 -27.11682 -23.86506 -22.57206 -21.35207 -20.10779 -19.15253 -18.32878 -17.42241 -16.97928 -16.04281 -15.73674 -15.18243 -14.72877 -14.39800 -14.13861 -13.67567 -13.43013 -13.01645 -12.15707 -11.97484 -11.88368 -11.72719 -11.64987 -11.43547 -11.20195 -10.96162 -10.91913 -10.87698 -10.62857 -10.48423 -10.30579 -9.39512 -8.98192 -8.73473 -7.87398 -6.16670 -4.23646 2.03319 2.84291 3.24102 3.30225 3.32505 3.36954 4.02011 4.32159 4.38024 4.47276 4.79733 5.13871 5.19459 5.25236 5.34076 5.36065 5.45083 5.52921 5.68471 5.82797 5.95237 6.09341 6.19182 6.30626 6.42472 7.31413 7.44930 7.52226 7.66785 7.70698 7.97360 8.63875 8.78207 9.11284 9.43170 10.93565 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.058293 B = 0.004252 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.213236 B = 6583.416038 C = 6854.044031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.710 5.710 11 C 0.505 3.495 12 O -0.556 6.556 13 C -0.115 4.115 14 H 0.098 0.902 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.087 4.087 18 H 0.113 0.887 19 C 0.484 3.516 20 O -0.512 6.512 21 O -0.517 6.517 22 C -0.107 4.107 23 H 0.266 0.734 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.390 0.610 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.407 0.593 32 H 0.095 0.905 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.482 -16.211 3.415 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.358 5.358 11 C 0.289 3.711 12 O -0.435 6.435 13 C -0.137 4.137 14 H 0.116 0.884 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.106 4.106 18 H 0.131 0.869 19 C 0.326 3.674 20 O -0.400 6.400 21 O -0.329 6.329 22 C -0.145 4.145 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.223 0.777 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.266 0.734 32 H 0.114 0.886 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.226 -15.901 3.334 18.684 hybrid contribution 1.035 0.483 -0.432 1.221 sum 10.261 -15.418 2.902 18.746 Atomic orbital electron populations 1.69977 1.06120 1.27296 1.48916 1.24955 0.94907 0.99454 0.94706 0.86417 0.79615 0.82662 0.78223 1.20472 1.21009 1.19741 1.21228 0.93252 0.90478 1.53190 0.91908 1.19110 0.88365 0.82039 0.97730 1.46444 1.11069 1.06122 1.72166 1.20263 0.89211 0.84310 0.77271 1.90643 1.16936 1.84777 1.51151 1.22152 0.97106 0.94317 1.00108 0.88418 1.22522 0.99321 0.95957 0.97392 1.22308 0.95605 0.94334 1.02296 1.21814 0.98978 0.90303 0.99517 0.86910 1.23567 0.74282 0.83794 0.85728 1.90710 1.53513 1.76602 1.19149 1.84557 1.64149 1.34488 1.49682 1.22218 0.99121 0.91957 1.01189 0.92448 0.95579 0.95525 0.77716 0.90188 0.90145 0.90986 0.90048 0.73448 0.88604 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 10 N -0.71 -14.76 5.49 -61.48 -0.34 -15.10 16 11 C 0.50 9.94 7.15 -10.99 -0.08 9.86 16 12 O -0.56 -13.29 15.46 5.56 0.09 -13.20 16 13 C -0.12 -1.62 3.25 -90.12 -0.29 -1.92 16 14 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.11 -1.26 6.26 -24.74 -0.15 -1.41 16 16 C -0.11 -0.97 6.32 -25.07 -0.16 -1.13 16 17 C -0.09 -0.91 3.42 -90.47 -0.31 -1.22 16 18 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 19 C 0.48 5.26 7.48 36.00 0.27 5.52 16 20 O -0.51 -7.27 15.98 -18.75 -0.30 -7.57 16 21 O -0.52 -4.09 13.39 -39.25 -0.53 -4.61 16 22 C -0.11 -1.47 5.77 -25.43 -0.15 -1.61 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 26 H 0.39 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.41 1.54 9.10 45.56 0.41 1.96 16 32 H 0.10 1.48 6.90 -51.92 -0.36 1.12 16 33 H 0.09 1.35 6.42 -51.93 -0.33 1.02 16 LS Contribution 285.66 15.07 4.30 4.30 Total: -1.00 -34.07 285.66 -5.88 -39.96 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.51 Total: 4.54 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.32 Total: 1.30 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.40 Total: -40.47 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.74 Total: -25.38 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.07 -5.88 -39.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236452438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.497 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds