Wall clock time and date at job start Mon Mar 30 2020 03:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99802 * 2 1 4 4 H 1.48504 * 109.46821 * 269.99912 * 3 2 1 5 5 H 1.48498 * 109.47236 * 29.99981 * 3 2 1 6 6 H 1.48498 * 109.47330 * 150.00261 * 3 2 1 7 7 C 1.37879 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99992 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00289 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99541 * 359.97438 * 11 10 9 13 13 C 1.50691 * 120.00300 * 179.97438 * 11 10 9 14 14 H 1.09006 * 110.54304 * 298.84302 * 13 11 10 15 15 C 1.54892 * 110.48722 * 61.45451 * 13 11 10 16 16 C 1.54891 * 102.74959 * 156.62211 * 15 13 11 17 17 C 1.54266 * 104.31343 * 321.99283 * 16 15 13 18 18 H 1.09004 * 110.03276 * 264.39171 * 17 16 15 19 19 C 1.50693 * 110.03608 * 142.96127 * 17 16 15 20 20 O 1.20825 * 120.00361 * 241.45838 * 19 17 16 21 21 O 1.34227 * 119.99907 * 61.45083 * 19 17 16 22 22 C 1.54224 * 106.42656 * 23.64256 * 17 16 15 23 23 H 0.97002 * 120.00022 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47379 * 59.99157 * 9 7 2 25 25 H 1.09008 * 109.46440 * 299.99811 * 9 7 2 26 26 H 0.96998 * 119.99750 * 359.97438 * 10 9 7 27 27 H 1.09000 * 110.75513 * 38.31071 * 15 13 11 28 28 H 1.09002 * 110.75596 * 274.93781 * 15 13 11 29 29 H 1.09002 * 110.48740 * 80.73781 * 16 15 13 30 30 H 1.08998 * 110.48604 * 203.24665 * 16 15 13 31 31 H 0.96705 * 117.00335 * 180.02562 * 21 19 17 32 32 H 1.09009 * 110.00234 * 240.69061 * 22 17 16 33 33 H 1.08999 * 110.02130 * 119.28481 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5615 -5.1049 0.0020 13 6 2.7331 -6.0287 0.0005 14 1 3.3553 -5.9996 -0.8941 15 6 3.6134 -5.9900 1.2744 16 6 4.0751 -7.4617 1.4156 17 6 2.8424 -8.2900 0.9981 18 1 2.2733 -8.5831 1.8804 19 6 3.2774 -9.5136 0.2337 20 8 2.9224 -9.6689 -0.9107 21 8 4.0592 -10.4311 0.8242 22 6 1.9881 -7.3761 0.0962 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8895 25 1 0.6241 -2.5566 0.8904 26 1 3.1567 -3.4354 0.0002 27 1 3.0262 -5.6846 2.1405 28 1 4.4683 -5.3288 1.1332 29 1 4.9140 -7.6640 0.7496 30 1 4.3484 -7.6784 2.4483 31 1 4.3127 -11.1989 0.2937 32 1 1.0040 -7.2279 0.5410 33 1 1.8876 -7.8185 -0.8949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236452438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:18 Heat of formation + Delta-G solvation = -179.519570 kcal Electronic energy + Delta-G solvation = -17000.851313 eV Core-core repulsion = 14024.293746 eV Total energy + Delta-G solvation = -2976.557567 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.67573 -40.64413 -38.03798 -37.02352 -36.14175 -34.35351 -31.31027 -29.77542 -29.03656 -25.33757 -24.00385 -22.59693 -21.25677 -20.48017 -19.21470 -18.88972 -18.00440 -17.61182 -17.03488 -16.82917 -16.15803 -16.04892 -15.17747 -15.10781 -14.51333 -14.27704 -14.06611 -13.78903 -13.15462 -12.89788 -12.78160 -12.69819 -12.55242 -12.34555 -12.23730 -12.16529 -11.74811 -11.70584 -11.47342 -11.36392 -10.79889 -10.66372 -9.82207 -8.28541 -6.45303 1.21269 1.44125 1.46515 1.57803 1.76661 2.11277 2.33203 2.59250 3.06498 3.40326 3.45764 3.86907 4.22177 4.25120 4.40432 4.42860 4.46687 4.59521 4.73116 4.98915 5.09054 5.14634 5.19546 5.22824 5.25025 5.31161 5.50088 5.64780 5.71112 5.85577 6.66003 6.91914 7.02293 7.24166 7.50406 8.83790 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.058293 B = 0.004252 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.213236 B = 6583.416038 C = 6854.044031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.264 3.736 10 N -0.703 5.703 11 C 0.501 3.499 12 O -0.605 6.605 13 C -0.106 4.106 14 H 0.118 0.882 15 C -0.110 4.110 16 C -0.095 4.095 17 C -0.084 4.084 18 H 0.131 0.869 19 C 0.493 3.507 20 O -0.552 6.552 21 O -0.505 6.505 22 C -0.108 4.108 23 H 0.268 0.732 24 H -0.016 1.016 25 H -0.012 1.012 26 H 0.409 0.591 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.427 0.573 32 H 0.070 0.930 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.807 -16.527 4.296 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.141 3.859 10 N -0.353 5.353 11 C 0.289 3.711 12 O -0.487 6.487 13 C -0.127 4.127 14 H 0.136 0.864 15 C -0.148 4.148 16 C -0.133 4.133 17 C -0.103 4.103 18 H 0.149 0.851 19 C 0.337 3.663 20 O -0.443 6.443 21 O -0.318 6.318 22 C -0.146 4.146 23 H 0.077 0.923 24 H 0.002 0.998 25 H 0.006 0.994 26 H 0.245 0.755 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.289 0.711 32 H 0.089 0.911 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.621 -16.268 4.230 21.020 hybrid contribution -0.054 0.477 -0.705 0.853 sum 12.567 -15.790 3.525 20.486 Atomic orbital electron populations 1.70144 1.08349 1.28557 1.50056 1.26083 0.95756 1.03971 0.93849 0.85146 0.78567 0.76896 0.78544 1.19749 1.21022 1.17670 1.21625 0.94355 0.90503 1.52796 0.89656 1.18554 0.88797 0.84526 0.93999 1.46171 1.11147 1.05428 1.72512 1.21329 0.89606 0.85024 0.75173 1.90621 1.19670 1.85497 1.52906 1.22173 0.96171 0.91411 1.02963 0.86436 1.22567 0.99109 0.98242 0.94854 1.22299 0.94853 0.91890 1.04227 1.21763 0.99489 0.90004 0.99067 0.85129 1.23495 0.73824 0.84044 0.84913 1.90712 1.55178 1.77541 1.20902 1.84500 1.62981 1.34807 1.49549 1.22113 0.98795 0.92605 1.01053 0.92277 0.99805 0.99367 0.75523 0.91161 0.87942 0.89675 0.87393 0.71132 0.91127 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.99 42.08 29.54 68.60 2.03 44.10 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.56 -30.10 9.28 25.60 0.24 -29.86 16 8 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.26 14.60 5.43 85.63 0.46 15.06 16 10 N -0.70 -29.62 5.49 -466.81 -2.56 -32.18 16 11 C 0.50 20.19 7.15 87.65 0.63 20.81 16 12 O -0.60 -30.56 15.46 -3.03 -0.05 -30.60 16 13 C -0.11 -2.87 3.25 -10.47 -0.03 -2.91 16 14 H 0.12 2.78 8.14 -2.38 -0.02 2.76 16 15 C -0.11 -2.11 6.26 31.89 0.20 -1.91 16 16 C -0.10 -1.34 6.32 31.67 0.20 -1.14 16 17 C -0.08 -1.56 3.42 -10.70 -0.04 -1.60 16 18 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 19 C 0.49 9.61 7.48 71.23 0.53 10.14 16 20 O -0.55 -15.16 15.98 21.97 0.35 -14.81 16 21 O -0.51 -6.28 13.39 -51.39 -0.69 -6.97 16 22 C -0.11 -2.93 5.77 31.44 0.18 -2.75 16 23 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 24 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 25 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 26 H 0.41 13.99 8.31 -92.71 -0.77 13.22 16 27 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.04 7.85 -2.39 -0.02 1.02 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.43 1.87 9.10 -74.05 -0.67 1.20 16 32 H 0.07 2.28 6.90 -2.38 -0.02 2.26 16 33 H 0.07 2.28 6.42 -2.39 -0.02 2.26 16 Total: -1.00 -77.74 285.66 1.90 -75.85 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -0.30 Total: 14.36 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 2.83 Total: 6.47 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -2.28 Total: -88.40 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.38 Total: -52.38 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -77.74 1.90 -75.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236452438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.673 kcal (2) G-P(sol) polarization free energy of solvation -77.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds