Wall clock time and date at job start Mon Mar 30 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36041 * 116.99858 * 2 1 4 4 C 1.38532 * 120.05176 * 359.97438 * 3 2 1 5 5 C 1.38251 * 120.02874 * 180.02562 * 4 3 2 6 6 C 1.38454 * 120.11295 * 0.02562 * 5 4 3 7 7 F 1.35105 * 119.94660 * 180.02562 * 6 5 4 8 8 C 1.38420 * 120.09757 * 359.95527 * 6 5 4 9 9 C 1.50702 * 120.00758 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.46919 * 195.04350 * 9 8 6 11 11 N 1.46900 * 109.47058 * 315.03834 * 9 8 6 12 12 C 1.50694 * 109.47563 * 75.04561 * 9 8 6 13 13 H 1.08000 * 120.00051 * 359.97438 * 12 9 8 14 14 C 1.37880 * 120.00198 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00077 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99759 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47141 * 60.00091 * 16 14 12 18 18 H 1.48502 * 109.46604 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47200 * 299.99703 * 16 14 12 20 20 C 1.38558 * 119.98071 * 0.04654 * 8 6 5 21 21 O 1.35988 * 120.06249 * 180.25520 * 20 8 6 22 22 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46899 * 300.00477 * 1 2 3 24 24 H 1.09001 * 109.47134 * 59.99770 * 1 2 3 25 25 H 1.08004 * 119.99054 * 0.04374 * 4 3 2 26 26 H 1.07998 * 119.94365 * 179.97438 * 5 4 3 27 27 H 1.00902 * 110.99959 * 60.00533 * 11 9 8 28 28 H 1.00902 * 111.00193 * 183.95520 * 11 9 8 29 29 H 0.97001 * 120.00066 * 179.97438 * 15 14 12 30 30 H 0.96696 * 113.99952 * 269.71773 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2931 2.3746 -0.0005 5 6 1.9212 3.6062 -0.0011 6 6 3.3037 3.6809 -0.0016 7 9 3.9141 4.8862 -0.0016 8 6 4.0615 2.5225 -0.0007 9 6 5.5662 2.6061 -0.0007 10 1 5.9840 1.6351 -0.2667 11 7 6.0007 3.6110 -0.9801 12 6 6.0474 3.0011 1.3716 13 1 5.3349 3.1747 2.1645 14 6 7.3973 3.1409 1.6151 15 7 8.2650 2.9291 0.6498 16 14 7.9937 3.6313 3.3161 17 1 7.5538 2.6161 4.3066 18 1 9.4765 3.7123 3.3163 19 1 7.4251 4.9546 3.6776 20 6 3.4361 1.2861 -0.0002 21 8 4.1788 0.1470 0.0060 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.2145 2.3189 -0.0002 26 1 1.3325 4.5116 -0.0019 27 1 5.6262 4.5206 -0.7554 28 1 7.0072 3.6406 -1.0457 29 1 9.2146 3.0278 0.8210 30 1 4.3938 -0.1871 -0.8756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238347139.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:35 Heat of formation + Delta-G solvation = -98.254400 kcal Electronic energy + Delta-G solvation = -17564.653784 eV Core-core repulsion = 14468.159834 eV Total energy + Delta-G solvation = -3096.493950 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.13715 -39.97833 -37.60611 -35.82739 -34.49203 -31.46554 -29.31160 -28.91941 -26.97928 -25.83275 -23.00299 -22.08717 -20.30607 -18.11530 -17.29446 -17.00152 -16.37899 -15.85940 -15.47194 -14.98878 -14.73290 -14.44333 -14.01903 -13.63525 -13.35045 -12.84563 -12.60170 -12.29903 -11.94404 -11.79543 -11.27957 -11.06018 -10.88687 -10.53299 -10.51720 -10.33288 -10.00161 -9.54624 -8.60974 -8.18918 -7.57381 -7.17888 -6.06231 -4.20911 1.57536 1.72193 3.28578 3.32142 3.35986 3.43299 3.95096 4.37789 4.56872 4.90272 5.10253 5.16737 5.17404 5.24030 5.36951 5.47421 5.66437 5.99534 6.20169 6.39324 6.60524 6.65647 6.77792 7.16279 7.51941 7.65071 7.77291 8.08064 8.26003 8.68484 8.94879 9.16547 9.49092 10.92745 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.029771 B = 0.007888 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.273932 B = 3548.708837 C = 3844.552439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.085 3.915 4 C -0.193 4.193 5 C -0.132 4.132 6 C 0.088 3.912 7 F -0.128 7.128 8 C -0.048 4.048 9 C 0.246 3.754 10 H 0.060 0.940 11 N -0.860 5.860 12 C -0.538 4.538 13 H 0.053 0.947 14 C 0.068 3.932 15 N -0.894 5.894 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.097 3.903 21 O -0.472 6.472 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.322 0.678 28 H 0.356 0.644 29 H 0.266 0.734 30 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 -2.194 -2.910 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.040 3.960 4 C -0.212 4.212 5 C -0.151 4.151 6 C 0.068 3.932 7 F -0.106 7.106 8 C -0.050 4.050 9 C 0.136 3.864 10 H 0.077 0.923 11 N -0.394 5.394 12 C -0.578 4.578 13 H 0.072 0.928 14 C -0.134 4.134 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.202 1.202 20 C 0.051 3.949 21 O -0.280 6.280 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.173 0.827 29 H 0.076 0.924 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -13.283 -2.736 -2.880 13.864 hybrid contribution 0.663 0.992 1.355 1.806 sum -12.620 -1.743 -1.525 12.831 Atomic orbital electron populations 1.23006 0.79305 1.03456 1.01050 1.86145 1.20512 1.26448 1.89166 1.19388 0.91596 0.84589 1.00450 1.20666 0.99463 0.91114 1.09966 1.20817 0.92737 0.98236 1.03308 1.17190 0.89688 0.80741 1.05536 1.91346 1.83069 1.42288 1.93929 1.20794 0.99965 0.89831 0.94458 1.17875 0.82611 0.94960 0.90987 0.92262 1.59619 1.18103 1.10466 1.51183 1.21644 0.92133 1.47494 0.96485 0.92841 1.24959 0.96479 0.94595 0.97399 1.69726 1.02253 1.49222 1.32097 0.86539 0.77435 0.79162 0.84223 1.20094 1.21090 1.20176 1.17223 0.85415 0.86386 1.05871 1.84932 1.71907 1.38583 1.32621 0.88611 0.92919 0.92955 0.85066 0.85120 0.86519 0.82723 0.92394 0.76390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.85 10.28 -34.41 -0.35 -5.20 16 3 C 0.09 1.50 6.70 -39.14 -0.26 1.23 16 4 C -0.19 -2.96 9.03 -39.47 -0.36 -3.32 16 5 C -0.13 -2.20 10.02 -39.50 -0.40 -2.59 16 6 C 0.09 1.83 7.01 -39.43 -0.28 1.55 16 7 F -0.13 -2.77 14.31 2.25 0.03 -2.73 16 8 C -0.05 -1.09 4.90 -104.44 -0.51 -1.61 16 9 C 0.25 6.35 2.76 -70.02 -0.19 6.16 16 10 H 0.06 1.64 7.14 -51.92 -0.37 1.27 16 11 N -0.86 -21.48 9.07 -6.65 -0.06 -21.54 16 12 C -0.54 -15.18 8.63 -34.44 -0.30 -15.47 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.07 1.90 5.38 -17.82 -0.10 1.80 16 15 N -0.89 -25.21 11.54 55.43 0.64 -24.57 16 16 Si 0.90 21.74 29.54 -169.99 -5.02 16.71 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 C 0.10 2.00 6.69 -39.13 -0.26 1.74 16 21 O -0.47 -9.47 12.12 -34.24 -0.42 -9.89 16 22 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.13 1.52 6.29 -52.48 -0.33 1.19 16 26 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.32 7.89 6.12 -39.29 -0.24 7.65 16 28 H 0.36 9.41 7.08 -39.29 -0.28 9.13 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 30 H 0.38 5.87 9.06 45.56 0.41 6.28 16 LS Contribution 262.39 15.07 3.95 3.95 Total: -1.00 -31.15 262.39 -4.87 -36.02 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -1.99 Total: 16.47 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.66 Total: -9.23 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.58 Total: -46.10 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.77 Total: -15.09 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.03 Total: -2.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.15 -4.87 -36.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238347139.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.232 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds