Wall clock time and date at job start Mon Mar 30 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36041 * 116.99858 * 2 1 4 4 C 1.38532 * 120.05176 * 359.97438 * 3 2 1 5 5 C 1.38251 * 120.02874 * 180.02562 * 4 3 2 6 6 C 1.38454 * 120.11295 * 0.02562 * 5 4 3 7 7 F 1.35105 * 119.94660 * 180.02562 * 6 5 4 8 8 C 1.38420 * 120.09757 * 359.95527 * 6 5 4 9 9 C 1.50702 * 120.00758 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.46919 * 195.04350 * 9 8 6 11 11 N 1.46900 * 109.47058 * 315.03834 * 9 8 6 12 12 C 1.50694 * 109.47563 * 75.04561 * 9 8 6 13 13 H 1.08000 * 120.00051 * 359.97438 * 12 9 8 14 14 C 1.37880 * 120.00198 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00077 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99759 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47141 * 60.00091 * 16 14 12 18 18 H 1.48502 * 109.46604 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47200 * 299.99703 * 16 14 12 20 20 C 1.38558 * 119.98071 * 0.04654 * 8 6 5 21 21 O 1.35988 * 120.06249 * 180.25520 * 20 8 6 22 22 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46899 * 300.00477 * 1 2 3 24 24 H 1.09001 * 109.47134 * 59.99770 * 1 2 3 25 25 H 1.08004 * 119.99054 * 0.04374 * 4 3 2 26 26 H 1.07998 * 119.94365 * 179.97438 * 5 4 3 27 27 H 1.00902 * 110.99959 * 60.00533 * 11 9 8 28 28 H 1.00902 * 111.00193 * 183.95520 * 11 9 8 29 29 H 0.97001 * 120.00066 * 179.97438 * 15 14 12 30 30 H 0.96696 * 113.99952 * 269.71773 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2931 2.3746 -0.0005 5 6 1.9212 3.6062 -0.0011 6 6 3.3037 3.6809 -0.0016 7 9 3.9141 4.8862 -0.0016 8 6 4.0615 2.5225 -0.0007 9 6 5.5662 2.6061 -0.0007 10 1 5.9840 1.6351 -0.2667 11 7 6.0007 3.6110 -0.9801 12 6 6.0474 3.0011 1.3716 13 1 5.3349 3.1747 2.1645 14 6 7.3973 3.1409 1.6151 15 7 8.2650 2.9291 0.6498 16 14 7.9937 3.6313 3.3161 17 1 7.5538 2.6161 4.3066 18 1 9.4765 3.7123 3.3163 19 1 7.4251 4.9546 3.6776 20 6 3.4361 1.2861 -0.0002 21 8 4.1788 0.1470 0.0060 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.2145 2.3189 -0.0002 26 1 1.3325 4.5116 -0.0019 27 1 5.6262 4.5206 -0.7554 28 1 7.0072 3.6406 -1.0457 29 1 9.2146 3.0278 0.8210 30 1 4.3938 -0.1871 -0.8756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238347139.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:35 Heat of formation + Delta-G solvation = -122.471927 kcal Electronic energy + Delta-G solvation = -17565.703935 eV Core-core repulsion = 14468.159834 eV Total energy + Delta-G solvation = -3097.544101 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.71926 -41.31401 -38.95458 -37.31355 -36.36503 -33.46431 -30.82207 -30.30810 -28.11703 -27.76648 -24.70593 -23.52710 -21.91350 -19.58789 -18.87597 -18.59284 -17.98928 -17.40578 -16.80932 -16.69173 -16.30261 -15.95190 -15.45786 -15.17459 -14.91794 -14.73617 -14.02209 -13.73129 -13.68303 -13.10987 -12.91667 -12.79918 -12.62873 -12.21630 -12.05409 -11.95312 -11.64924 -11.29575 -10.70666 -9.73605 -9.22837 -8.94807 -8.16177 -6.40356 0.17217 0.28494 1.34518 1.35907 1.44281 2.28793 2.36103 2.56052 3.02639 3.18209 3.57281 3.87132 4.02601 4.21050 4.45391 4.47891 4.49062 4.75141 4.78991 4.82162 5.05859 5.17746 5.20143 5.52735 5.59816 5.82278 6.01046 6.34316 6.57081 6.86036 6.88509 7.08278 7.33843 8.79749 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.029771 B = 0.007888 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.273932 B = 3548.708837 C = 3844.552439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.093 3.907 4 C -0.172 4.172 5 C -0.115 4.115 6 C 0.058 3.942 7 F -0.142 7.142 8 C -0.085 4.085 9 C 0.250 3.750 10 H 0.027 0.973 11 N -0.850 5.850 12 C -0.559 4.559 13 H 0.038 0.962 14 C 0.023 3.977 15 N -0.914 5.914 16 Si 0.959 3.041 17 H -0.276 1.276 18 H -0.275 1.275 19 H -0.272 1.272 20 C 0.073 3.927 21 O -0.492 6.492 22 H 0.119 0.881 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.181 0.819 26 H 0.169 0.831 27 H 0.324 0.676 28 H 0.345 0.655 29 H 0.269 0.731 30 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.863 -2.028 -2.436 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.047 3.953 4 C -0.191 4.191 5 C -0.133 4.133 6 C 0.038 3.962 7 F -0.121 7.121 8 C -0.087 4.087 9 C 0.140 3.860 10 H 0.045 0.955 11 N -0.383 5.383 12 C -0.598 4.598 13 H 0.057 0.943 14 C -0.177 4.177 15 N -0.553 5.553 16 Si 0.784 3.216 17 H -0.201 1.201 18 H -0.199 1.199 19 H -0.197 1.197 20 C 0.027 3.973 21 O -0.302 6.302 22 H 0.137 0.863 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.198 0.802 26 H 0.187 0.813 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -15.990 -2.580 -2.421 16.377 hybrid contribution 1.348 0.831 1.161 1.964 sum -14.642 -1.748 -1.259 14.800 Atomic orbital electron populations 1.23452 0.76126 1.05780 1.02722 1.86137 1.23710 1.25550 1.88667 1.19363 0.90607 0.86244 0.99107 1.21194 1.01636 0.89455 1.06789 1.21215 0.90927 1.00416 1.00772 1.17527 0.91400 0.79658 1.07607 1.91293 1.83620 1.42859 1.94294 1.20593 0.98205 0.91857 0.98015 1.17597 0.85369 0.93189 0.89844 0.95530 1.59595 1.17094 1.10550 1.51055 1.21872 0.92417 1.48144 0.97382 0.94335 1.25715 0.96556 0.94501 1.00960 1.69820 1.02467 1.49420 1.33602 0.85602 0.77369 0.78754 0.79874 1.20096 1.19934 1.19710 1.17433 0.87094 0.85607 1.07182 1.84862 1.72459 1.38723 1.34165 0.86302 0.91443 0.90832 0.80161 0.81319 0.86276 0.84016 0.92144 0.74829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -9.34 10.28 -80.11 -0.82 -10.17 16 3 C 0.09 3.06 6.70 22.56 0.15 3.21 16 4 C -0.17 -4.55 9.03 22.34 0.20 -4.35 16 5 C -0.11 -3.46 10.02 22.32 0.22 -3.23 16 6 C 0.06 2.37 7.01 22.36 0.16 2.53 16 7 F -0.14 -6.20 14.31 44.97 0.64 -5.56 16 8 C -0.08 -3.92 4.90 -19.74 -0.10 -4.02 16 9 C 0.25 13.52 2.76 43.42 0.12 13.64 16 10 H 0.03 1.58 7.14 -2.38 -0.02 1.56 16 11 N -0.85 -44.22 9.07 -174.95 -1.59 -45.80 16 12 C -0.56 -32.62 8.63 25.60 0.22 -32.40 16 13 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 14 C 0.02 1.31 5.38 84.66 0.46 1.76 16 15 N -0.91 -52.80 11.54 21.45 0.25 -52.55 16 16 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 C 0.07 3.03 6.69 22.56 0.15 3.18 16 21 O -0.49 -20.45 12.12 -79.51 -0.96 -21.42 16 22 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 24 H 0.07 0.89 7.66 -2.39 -0.02 0.88 16 25 H 0.18 2.98 6.29 -2.91 -0.02 2.96 16 26 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 27 H 0.32 16.45 6.12 -89.69 -0.55 15.90 16 28 H 0.35 19.00 7.08 -89.69 -0.64 18.37 16 29 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.40 12.87 9.06 -74.06 -0.67 12.20 16 Total: -1.00 -69.86 262.39 1.60 -68.27 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -0.64 Total: 38.42 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 2.70 Total: -18.36 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -1.34 Total: -98.36 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.79 Total: -31.59 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.64 Total: -5.56 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -69.86 1.60 -68.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238347139.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.205 kcal (2) G-P(sol) polarization free energy of solvation -69.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds