Wall clock time and date at job start Mon Mar 30 2020 03:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35993 * 117.00343 * 2 1 4 4 C 1.38627 * 120.05759 * 359.97438 * 3 2 1 5 5 C 1.38217 * 120.03860 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.91946 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47532 * 19.98279 * 6 5 4 8 8 N 1.46907 * 109.46987 * 139.98337 * 6 5 4 9 9 C 1.50696 * 109.47455 * 259.98117 * 6 5 4 10 10 H 1.07998 * 120.00287 * 359.97438 * 9 6 5 11 11 C 1.37879 * 120.00152 * 180.02562 * 9 6 5 12 12 N 1.31517 * 120.00110 * 180.02562 * 11 9 6 13 13 Si 1.86799 * 119.99926 * 359.97438 * 11 9 6 14 14 H 1.48497 * 109.47316 * 90.00409 * 13 11 9 15 15 H 1.48502 * 109.47144 * 210.00375 * 13 11 9 16 16 H 1.48501 * 109.47262 * 330.00254 * 13 11 9 17 17 C 1.38261 * 120.16232 * 359.97438 * 5 4 3 18 18 C 1.38415 * 120.11853 * 0.02562 * 17 5 4 19 19 F 1.35097 * 120.01984 * 179.72792 * 18 17 5 20 20 C 1.38761 * 119.96092 * 359.97438 * 18 17 5 21 21 O 1.36051 * 120.07814 * 179.97438 * 20 18 17 22 22 H 1.09001 * 109.46724 * 59.99939 * 1 2 3 23 23 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46951 * 300.00377 * 1 2 3 25 25 H 1.08000 * 119.98536 * 0.04824 * 4 3 2 26 26 H 1.00894 * 110.99785 * 59.99862 * 8 6 5 27 27 H 1.00899 * 111.00014 * 183.96060 * 8 6 5 28 28 H 0.97001 * 119.99748 * 180.02562 * 12 11 9 29 29 H 1.08006 * 119.94478 * 180.02562 * 17 5 4 30 30 H 0.96692 * 113.99987 * 90.00887 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2927 2.3751 -0.0005 5 6 1.9206 3.6064 -0.0011 6 6 1.0986 4.8694 -0.0022 7 1 0.0908 4.6474 0.3487 8 7 1.7202 5.8590 0.8880 9 6 1.0323 5.4244 -1.4017 10 1 1.5354 4.9139 -2.2095 11 6 0.3301 6.5846 -1.6507 12 7 0.2718 7.0687 -2.8722 13 14 -0.5396 7.4681 -0.2534 14 1 0.3854 8.4540 0.3608 15 1 -1.7351 8.1732 -0.7816 16 1 -0.9608 6.4793 0.7714 17 6 3.3012 3.6821 -0.0005 18 6 4.0603 2.5247 0.0000 19 9 5.4091 2.6010 -0.0050 20 6 3.4350 1.2859 0.0005 21 8 4.1788 0.1467 0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2141 2.3194 -0.0002 26 1 2.6560 6.0817 0.5836 27 1 1.1538 6.6914 0.9548 28 1 -0.2219 7.8851 -3.0472 29 1 3.7882 4.6461 -0.0005 30 1 4.3941 -0.1825 0.8839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238416219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:09 Heat of formation + Delta-G solvation = -94.402171 kcal Electronic energy + Delta-G solvation = -17255.177076 eV Core-core repulsion = 14158.850171 eV Total energy + Delta-G solvation = -3096.326905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.56406 -40.07396 -37.56558 -36.97671 -34.32175 -31.90275 -29.68353 -29.24376 -27.10942 -26.12746 -23.24132 -22.06293 -20.47245 -18.47052 -17.36968 -17.22980 -16.71253 -16.00230 -15.85522 -15.30635 -15.12535 -14.80837 -14.32948 -14.17195 -13.61868 -13.10521 -12.71705 -12.52243 -12.13374 -11.82934 -11.60306 -11.56176 -10.99436 -10.84687 -10.41769 -10.35427 -10.26900 -9.68161 -8.89162 -8.27742 -7.92055 -7.60553 -6.33666 -4.39196 1.44176 1.63135 3.05226 3.18146 3.20181 3.26334 3.88324 4.12657 4.30869 4.76328 4.93699 5.08330 5.26298 5.29190 5.33222 5.47112 5.62338 5.74871 5.83662 6.18392 6.34293 6.44624 6.58851 6.95495 7.16505 7.29579 7.37023 7.88561 7.92737 8.13478 8.34240 8.73286 9.23499 10.78538 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.026899 B = 0.007689 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.700380 B = 3640.789716 C = 4210.211111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.129 3.871 4 C -0.205 4.205 5 C 0.042 3.958 6 C 0.206 3.794 7 H 0.055 0.945 8 N -0.849 5.849 9 C -0.551 4.551 10 H 0.079 0.921 11 C 0.075 3.925 12 N -0.884 5.884 13 Si 0.873 3.127 14 H -0.273 1.273 15 H -0.289 1.289 16 H -0.259 1.259 17 C -0.162 4.162 18 C 0.110 3.890 19 F -0.134 7.134 20 C 0.011 3.989 21 O -0.478 6.478 22 H 0.060 0.940 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.136 0.864 26 H 0.333 0.667 27 H 0.320 0.680 28 H 0.268 0.732 29 H 0.139 0.861 30 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 -9.657 8.134 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.083 3.917 4 C -0.224 4.224 5 C 0.041 3.959 6 C 0.097 3.903 7 H 0.073 0.927 8 N -0.383 5.383 9 C -0.590 4.590 10 H 0.097 0.903 11 C -0.129 4.129 12 N -0.521 5.521 13 Si 0.701 3.299 14 H -0.200 1.200 15 H -0.216 1.216 16 H -0.183 1.183 17 C -0.181 4.181 18 C 0.090 3.910 19 F -0.113 7.113 20 C -0.035 4.035 21 O -0.285 6.285 22 H 0.078 0.922 23 H 0.116 0.884 24 H 0.075 0.925 25 H 0.154 0.846 26 H 0.146 0.854 27 H 0.136 0.864 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.339 -10.200 7.961 13.008 hybrid contribution -0.452 1.324 0.129 1.405 sum 0.887 -8.876 8.090 12.042 Atomic orbital electron populations 1.23097 0.78364 1.03624 1.01947 1.86072 1.21306 1.26185 1.88698 1.18966 0.90658 0.84870 0.97231 1.21084 1.00496 0.90981 1.09863 1.19700 0.92601 0.94961 0.88610 1.18544 0.92891 0.86621 0.92250 0.92695 1.59726 1.06925 1.15812 1.55814 1.21558 1.34493 1.09574 0.93399 0.90321 1.25024 0.95245 0.96977 0.95665 1.69888 1.41000 1.21642 1.19554 0.87014 0.79859 0.80502 0.82520 1.19979 1.21572 1.18346 1.20796 0.93990 0.97018 1.06309 1.17671 0.76951 0.93127 1.03223 1.91460 1.28864 1.97082 1.93884 1.17326 0.86850 0.85250 1.14062 1.84954 1.71733 1.39155 1.32699 0.92156 0.88411 0.92512 0.84616 0.85425 0.86369 0.92179 0.84303 0.76904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.77 10.28 -34.26 -0.35 -5.12 16 3 C 0.13 2.22 6.70 -39.13 -0.26 1.96 16 4 C -0.20 -3.69 8.65 -39.45 -0.34 -4.03 16 5 C 0.04 0.85 4.89 -104.62 -0.51 0.34 16 6 C 0.21 4.58 2.48 -70.01 -0.17 4.41 16 7 H 0.06 1.24 7.06 -51.93 -0.37 0.87 16 8 N -0.85 -17.61 8.97 -6.65 -0.06 -17.67 16 9 C -0.55 -14.52 9.28 -34.44 -0.32 -14.84 16 10 H 0.08 2.31 7.98 -52.49 -0.42 1.90 16 11 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.88 -25.65 13.96 55.43 0.77 -24.88 16 13 Si 0.87 19.86 24.61 -169.99 -4.18 15.67 16 14 H -0.27 -5.98 7.01 56.52 0.40 -5.59 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 17 C -0.16 -3.09 9.26 -39.51 -0.37 -3.46 16 18 C 0.11 2.01 7.31 -39.32 -0.29 1.72 16 19 F -0.13 -2.39 17.11 2.25 0.04 -2.35 16 20 C 0.01 0.20 6.72 -39.08 -0.26 -0.06 16 21 O -0.48 -7.59 13.15 -34.44 -0.45 -8.04 16 22 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 23 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.58 7.66 -51.93 -0.40 0.19 16 25 H 0.14 2.21 6.27 -52.49 -0.33 1.88 16 26 H 0.33 6.57 7.33 -39.29 -0.29 6.28 16 27 H 0.32 6.76 4.30 -39.29 -0.17 6.59 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.14 2.56 6.65 -52.48 -0.35 2.21 16 30 H 0.38 4.09 9.06 45.56 0.41 4.51 16 LS Contribution 259.75 15.07 3.91 3.91 Total: -1.00 -30.47 259.75 -3.85 -34.32 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -1.90 Total: 14.92 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.63 Total: -10.76 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.71 Total: -42.55 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.81 Total: -13.16 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.18 Total: 15.67 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.47 -3.85 -34.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238416219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.077 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds