Wall clock time and date at job start Mon Mar 30 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35993 * 117.00343 * 2 1 4 4 C 1.38627 * 120.05759 * 359.97438 * 3 2 1 5 5 C 1.38217 * 120.03860 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.91946 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47532 * 19.98279 * 6 5 4 8 8 N 1.46907 * 109.46987 * 139.98337 * 6 5 4 9 9 C 1.50696 * 109.47455 * 259.98117 * 6 5 4 10 10 H 1.07998 * 120.00287 * 359.97438 * 9 6 5 11 11 C 1.37879 * 120.00152 * 180.02562 * 9 6 5 12 12 N 1.31517 * 120.00110 * 180.02562 * 11 9 6 13 13 Si 1.86799 * 119.99926 * 359.97438 * 11 9 6 14 14 H 1.48497 * 109.47316 * 90.00409 * 13 11 9 15 15 H 1.48502 * 109.47144 * 210.00375 * 13 11 9 16 16 H 1.48501 * 109.47262 * 330.00254 * 13 11 9 17 17 C 1.38261 * 120.16232 * 359.97438 * 5 4 3 18 18 C 1.38415 * 120.11853 * 0.02562 * 17 5 4 19 19 F 1.35097 * 120.01984 * 179.72792 * 18 17 5 20 20 C 1.38761 * 119.96092 * 359.97438 * 18 17 5 21 21 O 1.36051 * 120.07814 * 179.97438 * 20 18 17 22 22 H 1.09001 * 109.46724 * 59.99939 * 1 2 3 23 23 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46951 * 300.00377 * 1 2 3 25 25 H 1.08000 * 119.98536 * 0.04824 * 4 3 2 26 26 H 1.00894 * 110.99785 * 59.99862 * 8 6 5 27 27 H 1.00899 * 111.00014 * 183.96060 * 8 6 5 28 28 H 0.97001 * 119.99748 * 180.02562 * 12 11 9 29 29 H 1.08006 * 119.94478 * 180.02562 * 17 5 4 30 30 H 0.96692 * 113.99987 * 90.00887 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2927 2.3751 -0.0005 5 6 1.9206 3.6064 -0.0011 6 6 1.0986 4.8694 -0.0022 7 1 0.0908 4.6474 0.3487 8 7 1.7202 5.8590 0.8880 9 6 1.0323 5.4244 -1.4017 10 1 1.5354 4.9139 -2.2095 11 6 0.3301 6.5846 -1.6507 12 7 0.2718 7.0687 -2.8722 13 14 -0.5396 7.4681 -0.2534 14 1 0.3854 8.4540 0.3608 15 1 -1.7351 8.1732 -0.7816 16 1 -0.9608 6.4793 0.7714 17 6 3.3012 3.6821 -0.0005 18 6 4.0603 2.5247 0.0000 19 9 5.4091 2.6010 -0.0050 20 6 3.4350 1.2859 0.0005 21 8 4.1788 0.1467 0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2141 2.3194 -0.0002 26 1 2.6560 6.0817 0.5836 27 1 1.1538 6.6914 0.9548 28 1 -0.2219 7.8851 -3.0472 29 1 3.7882 4.6461 -0.0005 30 1 4.3941 -0.1825 0.8839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238416219.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:08 Heat of formation + Delta-G solvation = -118.614512 kcal Electronic energy + Delta-G solvation = -17256.227002 eV Core-core repulsion = 14158.850171 eV Total energy + Delta-G solvation = -3097.376831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.97575 -41.38922 -38.87843 -38.36782 -35.99516 -33.86523 -31.10413 -30.60079 -28.31937 -27.88960 -24.89187 -23.41056 -22.04186 -19.78218 -19.20341 -18.67244 -18.15701 -17.43682 -17.22512 -16.82429 -16.40934 -16.33662 -15.82434 -15.54227 -15.22567 -14.66164 -14.28203 -14.00952 -13.75089 -13.20527 -13.09272 -12.88314 -12.74921 -12.30746 -11.94035 -11.76093 -11.71722 -11.60256 -10.92754 -9.75953 -9.42424 -9.17726 -8.40730 -6.51318 0.01884 0.22624 1.26578 1.34139 1.43279 2.09024 2.20990 2.46826 2.91858 3.01488 3.39865 3.64511 3.90902 4.15403 4.18104 4.32742 4.40300 4.41518 4.73963 4.79730 4.82012 4.95589 5.04898 5.31717 5.56878 5.65776 5.99912 6.17984 6.33676 6.52314 6.65656 6.76100 7.15569 8.75220 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.026899 B = 0.007689 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.700380 B = 3640.789716 C = 4210.211111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.315 6.315 3 C 0.132 3.868 4 C -0.204 4.204 5 C 0.017 3.983 6 C 0.214 3.786 7 H 0.058 0.942 8 N -0.838 5.838 9 C -0.552 4.552 10 H 0.032 0.968 11 C 0.019 3.981 12 N -0.936 5.936 13 Si 0.939 3.061 14 H -0.256 1.256 15 H -0.293 1.293 16 H -0.240 1.240 17 C -0.170 4.170 18 C 0.103 3.897 19 F -0.134 7.134 20 C 0.017 3.983 21 O -0.485 6.485 22 H 0.057 0.943 23 H 0.130 0.870 24 H 0.069 0.931 25 H 0.152 0.848 26 H 0.339 0.661 27 H 0.320 0.680 28 H 0.270 0.730 29 H 0.138 0.862 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -10.630 10.044 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.229 6.229 3 C 0.086 3.914 4 C -0.223 4.223 5 C 0.016 3.984 6 C 0.104 3.896 7 H 0.076 0.924 8 N -0.372 5.372 9 C -0.591 4.591 10 H 0.050 0.950 11 C -0.181 4.181 12 N -0.575 5.575 13 Si 0.763 3.237 14 H -0.181 1.181 15 H -0.220 1.220 16 H -0.163 1.163 17 C -0.190 4.190 18 C 0.083 3.917 19 F -0.112 7.112 20 C -0.030 4.030 21 O -0.296 6.296 22 H 0.075 0.925 23 H 0.148 0.852 24 H 0.088 0.912 25 H 0.169 0.831 26 H 0.152 0.848 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.759 -11.202 9.905 14.973 hybrid contribution -0.215 1.455 -0.522 1.560 sum 0.544 -9.748 9.383 13.541 Atomic orbital electron populations 1.23452 0.76119 1.06003 1.02422 1.86079 1.23554 1.24985 1.88241 1.18948 0.90650 0.85369 0.96474 1.21225 1.01429 0.90543 1.09083 1.19584 0.92852 0.94864 0.91070 1.18358 0.93742 0.87741 0.89736 0.92386 1.59685 1.07114 1.15540 1.54819 1.21754 1.33460 1.09378 0.94523 0.94987 1.25908 0.96047 0.97863 0.98240 1.70048 1.42672 1.22537 1.22210 0.85945 0.78585 0.79726 0.79429 1.18124 1.21965 1.16323 1.20797 0.93940 0.97468 1.06757 1.17669 0.76989 0.93269 1.03758 1.91456 1.28720 1.97101 1.93941 1.17403 0.87303 0.85453 1.12792 1.84881 1.71419 1.38352 1.34922 0.92460 0.85205 0.91212 0.83063 0.84830 0.86410 0.92110 0.84448 0.74083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -8.92 10.28 -79.56 -0.82 -9.74 16 3 C 0.13 4.33 6.70 22.56 0.15 4.48 16 4 C -0.20 -7.06 8.65 22.36 0.19 -6.87 16 5 C 0.02 0.68 4.89 -19.86 -0.10 0.58 16 6 C 0.21 9.35 2.48 43.42 0.11 9.46 16 7 H 0.06 2.50 7.06 -2.39 -0.02 2.48 16 8 N -0.84 -33.43 8.97 -174.94 -1.57 -34.99 16 9 C -0.55 -29.61 9.28 25.60 0.24 -29.37 16 10 H 0.03 1.97 7.98 -2.91 -0.02 1.94 16 11 C 0.02 1.04 5.47 84.65 0.46 1.51 16 12 N -0.94 -55.69 13.96 21.45 0.30 -55.39 16 13 Si 0.94 40.32 24.61 68.60 1.69 42.00 16 14 H -0.26 -10.24 7.01 99.48 0.70 -9.54 16 15 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 17 C -0.17 -6.47 9.26 22.32 0.21 -6.27 16 18 C 0.10 3.67 7.31 22.44 0.16 3.84 16 19 F -0.13 -4.64 17.11 44.97 0.77 -3.87 16 20 C 0.02 0.57 6.72 22.59 0.15 0.73 16 21 O -0.48 -14.31 13.15 -80.22 -1.06 -15.37 16 22 H 0.06 1.18 7.66 -2.39 -0.02 1.16 16 23 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 25 H 0.15 4.63 6.27 -2.91 -0.02 4.62 16 26 H 0.34 13.02 7.33 -89.70 -0.66 12.37 16 27 H 0.32 12.71 4.30 -89.69 -0.39 12.32 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.14 5.11 6.65 -2.91 -0.02 5.09 16 30 H 0.40 7.63 9.06 -74.06 -0.67 6.96 16 Total: -1.00 -65.65 259.75 1.44 -64.21 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: -0.56 Total: 33.67 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 2.69 Total: -20.52 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -1.27 Total: -90.39 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.87 Total: -25.11 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.77 Total: -3.87 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.69 Total: 42.00 kcal Total: -65.65 1.44 -64.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238416219.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.409 kcal (2) G-P(sol) polarization free energy of solvation -65.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds