Wall clock time and date at job start Mon Mar 30 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36033 * 117.00408 * 2 1 4 4 C 1.38551 * 120.04561 * 0.23193 * 3 2 1 5 5 C 1.38246 * 120.01937 * 180.25102 * 4 3 2 6 6 C 1.50703 * 119.93916 * 179.76717 * 5 4 3 7 7 H 1.08994 * 109.47275 * 144.72893 * 6 5 4 8 8 N 1.46898 * 109.46797 * 24.72408 * 6 5 4 9 9 C 1.50700 * 109.47148 * 264.72669 * 6 5 4 10 10 H 1.08002 * 119.99770 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00083 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.46986 * 270.00126 * 13 11 9 15 15 H 1.48496 * 109.47029 * 30.00143 * 13 11 9 16 16 H 1.48499 * 109.47352 * 149.99973 * 13 11 9 17 17 C 1.38453 * 120.12475 * 359.49522 * 5 4 3 18 18 F 1.35092 * 119.95545 * 180.25206 * 17 5 4 19 19 C 1.38433 * 120.09021 * 0.27359 * 17 5 4 20 20 C 1.38560 * 119.97801 * 359.97438 * 19 17 5 21 21 O 1.35993 * 120.05982 * 179.97438 * 20 19 17 22 22 H 1.09005 * 109.47082 * 300.00138 * 1 2 3 23 23 H 1.08999 * 109.47078 * 59.99653 * 1 2 3 24 24 H 1.08997 * 109.47866 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.98759 * 359.97438 * 4 3 2 26 26 H 1.00892 * 111.00332 * 300.00256 * 8 6 5 27 27 H 1.00905 * 110.99665 * 63.96030 * 8 6 5 28 28 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 29 29 H 1.08003 * 120.00189 * 179.97438 * 19 17 5 30 30 H 0.96697 * 113.99836 * 89.99644 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2930 2.3747 0.0049 5 6 1.9213 3.6061 -0.0004 6 6 1.0998 4.8696 -0.0004 7 1 1.6073 5.6329 0.5893 8 7 -0.2196 4.5956 0.5844 9 6 0.9303 5.3585 -1.4158 10 1 1.3728 4.8090 -2.2335 11 6 0.2094 6.5066 -1.6668 12 7 -0.3298 7.1755 -0.6711 13 14 -0.0013 7.1124 -3.4213 14 1 1.1119 8.0335 -3.7640 15 1 0.0113 5.9536 -4.3499 16 1 -1.2947 7.8315 -3.5447 17 6 3.3038 3.6809 0.0000 18 9 3.9142 4.8861 0.0001 19 6 4.0615 2.5223 0.0000 20 6 3.4360 1.2860 0.0001 21 8 4.1788 0.1468 -0.0004 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 0.2145 2.3188 0.0082 26 1 -0.7104 3.8906 0.0552 27 1 -0.1370 4.3280 1.5538 28 1 -0.2207 6.8607 0.2400 29 1 5.1399 2.5823 0.0000 30 1 4.3940 -0.1828 0.8828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238423884.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:10 Heat of formation + Delta-G solvation = -99.423984 kcal Electronic energy + Delta-G solvation = -17429.002297 eV Core-core repulsion = 14332.457630 eV Total energy + Delta-G solvation = -3096.544667 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.21810 -40.17980 -37.64406 -36.88676 -34.34468 -31.50722 -29.57003 -28.98014 -27.33672 -25.44669 -23.07633 -21.95175 -20.70455 -18.61065 -17.46159 -16.97268 -16.68314 -16.22144 -15.61433 -14.97236 -14.67199 -14.41534 -14.22197 -13.86287 -13.62264 -13.56291 -13.12463 -12.15266 -12.05961 -11.84552 -11.55087 -11.09211 -10.73514 -10.66232 -10.52361 -10.31658 -10.06195 -9.02464 -8.43323 -8.32637 -7.69890 -7.59426 -6.23957 -4.07701 1.38364 1.51149 3.30898 3.46476 3.49105 3.64998 3.76075 4.19808 4.57519 4.89263 4.96328 5.09409 5.19809 5.32406 5.38767 5.46797 5.55809 5.76762 5.86920 5.98071 6.32917 6.44946 6.52415 6.99169 7.06438 7.30326 7.81264 7.86988 8.15634 8.54701 8.61747 8.98223 9.75392 11.16219 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.007945 C = 0.007049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.995866 B = 3523.363515 C = 3971.266210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.094 3.906 4 C -0.178 4.178 5 C -0.066 4.066 6 C 0.239 3.761 7 H 0.049 0.951 8 N -0.827 5.827 9 C -0.607 4.607 10 H 0.047 0.953 11 C 0.040 3.960 12 N -0.888 5.888 13 Si 1.068 2.932 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.080 3.920 18 F -0.131 7.131 19 C -0.145 4.145 20 C 0.072 3.928 21 O -0.484 6.484 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.137 0.863 26 H 0.325 0.675 27 H 0.304 0.696 28 H 0.290 0.710 29 H 0.141 0.859 30 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -12.458 3.959 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.048 3.952 4 C -0.197 4.197 5 C -0.070 4.070 6 C 0.129 3.871 7 H 0.066 0.934 8 N -0.355 5.355 9 C -0.646 4.646 10 H 0.065 0.935 11 C -0.170 4.170 12 N -0.522 5.522 13 Si 0.896 3.104 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.210 1.210 17 C 0.060 3.940 18 F -0.109 7.109 19 C -0.164 4.164 20 C 0.027 3.973 21 O -0.292 6.292 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.116 0.884 25 H 0.155 0.845 26 H 0.139 0.861 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.159 0.841 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.850 -10.567 2.290 11.182 hybrid contribution 1.036 -2.017 1.479 2.707 sum 3.886 -12.584 3.769 13.699 Atomic orbital electron populations 1.23072 0.78641 1.03629 1.01711 1.86090 1.21096 1.26270 1.88989 1.19362 0.91516 0.84798 0.99524 1.20849 1.00390 0.90517 1.07941 1.21526 0.93165 0.98885 0.93385 1.18375 0.84138 0.87020 0.97533 0.93389 1.59417 1.21498 1.50802 1.03783 1.21607 1.40009 1.13160 0.89803 0.93455 1.25645 0.92758 0.93192 1.05385 1.70533 1.39541 1.39996 1.02093 0.83589 0.76681 0.75722 0.74381 1.21479 1.21662 1.21018 1.17196 0.90375 0.80277 1.06188 1.91487 1.82928 1.42558 1.93966 1.21094 1.00723 0.90326 1.04268 1.17129 0.85890 0.85755 1.08533 1.84905 1.71991 1.39447 1.32855 0.92734 0.92351 0.88380 0.84531 0.86088 0.88544 0.89767 0.84149 0.76546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.74 10.28 -34.39 -0.35 -5.10 16 3 C 0.09 1.59 6.70 -39.13 -0.26 1.33 16 4 C -0.18 -3.23 8.26 -39.46 -0.33 -3.56 16 5 C -0.07 -1.40 4.99 -104.54 -0.52 -1.92 16 6 C 0.24 5.81 2.24 -70.02 -0.16 5.66 16 7 H 0.05 1.29 7.65 -51.93 -0.40 0.90 16 8 N -0.83 -18.11 7.38 -6.65 -0.05 -18.16 16 9 C -0.61 -16.87 8.71 -34.44 -0.30 -17.17 16 10 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 11 C 0.04 1.14 5.39 -17.82 -0.10 1.05 16 12 N -0.89 -26.54 13.51 55.43 0.75 -25.79 16 13 Si 1.07 25.39 29.90 -169.99 -5.08 20.30 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.08 1.62 7.24 -39.43 -0.29 1.33 16 18 F -0.13 -2.84 16.55 2.25 0.04 -2.80 16 19 C -0.14 -2.47 9.96 -39.39 -0.39 -2.86 16 20 C 0.07 1.20 6.72 -39.13 -0.26 0.94 16 21 O -0.48 -6.94 13.29 -34.26 -0.46 -7.40 16 22 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 23 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.14 2.27 4.52 -52.49 -0.24 2.04 16 26 H 0.33 6.74 7.20 -39.30 -0.28 6.46 16 27 H 0.30 5.77 9.06 -39.29 -0.36 5.41 16 28 H 0.29 8.62 6.39 -40.82 -0.26 8.36 16 29 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 30 H 0.38 3.50 9.06 45.56 0.41 3.91 16 LS Contribution 265.39 15.07 4.00 4.00 Total: -1.00 -32.46 265.39 -4.73 -37.19 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -1.96 Total: 11.69 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.61 Total: -13.94 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.70 Total: -43.95 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.81 Total: -12.49 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.46 -4.73 -37.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238423884.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.234 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds