Wall clock time and date at job start Mon Mar 30 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36033 * 117.00408 * 2 1 4 4 C 1.38551 * 120.04561 * 0.23193 * 3 2 1 5 5 C 1.38246 * 120.01937 * 180.25102 * 4 3 2 6 6 C 1.50703 * 119.93916 * 179.76717 * 5 4 3 7 7 H 1.08994 * 109.47275 * 144.72893 * 6 5 4 8 8 N 1.46898 * 109.46797 * 24.72408 * 6 5 4 9 9 C 1.50700 * 109.47148 * 264.72669 * 6 5 4 10 10 H 1.08002 * 119.99770 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00083 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.46986 * 270.00126 * 13 11 9 15 15 H 1.48496 * 109.47029 * 30.00143 * 13 11 9 16 16 H 1.48499 * 109.47352 * 149.99973 * 13 11 9 17 17 C 1.38453 * 120.12475 * 359.49522 * 5 4 3 18 18 F 1.35092 * 119.95545 * 180.25206 * 17 5 4 19 19 C 1.38433 * 120.09021 * 0.27359 * 17 5 4 20 20 C 1.38560 * 119.97801 * 359.97438 * 19 17 5 21 21 O 1.35993 * 120.05982 * 179.97438 * 20 19 17 22 22 H 1.09005 * 109.47082 * 300.00138 * 1 2 3 23 23 H 1.08999 * 109.47078 * 59.99653 * 1 2 3 24 24 H 1.08997 * 109.47866 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.98759 * 359.97438 * 4 3 2 26 26 H 1.00892 * 111.00332 * 300.00256 * 8 6 5 27 27 H 1.00905 * 110.99665 * 63.96030 * 8 6 5 28 28 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 29 29 H 1.08003 * 120.00189 * 179.97438 * 19 17 5 30 30 H 0.96697 * 113.99836 * 89.99644 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2930 2.3747 0.0049 5 6 1.9213 3.6061 -0.0004 6 6 1.0998 4.8696 -0.0004 7 1 1.6073 5.6329 0.5893 8 7 -0.2196 4.5956 0.5844 9 6 0.9303 5.3585 -1.4158 10 1 1.3728 4.8090 -2.2335 11 6 0.2094 6.5066 -1.6668 12 7 -0.3298 7.1755 -0.6711 13 14 -0.0013 7.1124 -3.4213 14 1 1.1119 8.0335 -3.7640 15 1 0.0113 5.9536 -4.3499 16 1 -1.2947 7.8315 -3.5447 17 6 3.3038 3.6809 0.0000 18 9 3.9142 4.8861 0.0001 19 6 4.0615 2.5223 0.0000 20 6 3.4360 1.2860 0.0001 21 8 4.1788 0.1468 -0.0004 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 0.2145 2.3188 0.0082 26 1 -0.7104 3.8906 0.0552 27 1 -0.1370 4.3280 1.5538 28 1 -0.2207 6.8607 0.2400 29 1 5.1399 2.5823 0.0000 30 1 4.3940 -0.1828 0.8828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238423884.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:10 Heat of formation + Delta-G solvation = -124.453382 kcal Electronic energy + Delta-G solvation = -17430.087653 eV Core-core repulsion = 14332.457630 eV Total energy + Delta-G solvation = -3097.630023 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.81969 -41.48625 -38.85810 -38.36201 -36.04222 -33.46784 -30.95598 -30.43929 -28.57403 -27.26536 -24.76952 -23.34042 -22.36715 -19.88279 -19.13906 -18.52037 -18.22624 -17.60583 -16.96660 -16.46234 -16.32963 -15.83909 -15.67331 -15.49177 -15.23418 -14.99824 -14.58095 -13.98537 -13.73044 -13.12593 -12.83217 -12.70486 -12.52141 -12.18282 -11.94026 -11.88965 -11.77125 -10.88547 -10.52828 -9.92232 -9.46133 -9.04593 -8.43332 -6.30285 -0.00471 0.08379 1.53889 1.61738 1.79481 2.16239 2.35868 2.61634 2.92584 3.25809 3.47825 3.64188 3.81513 4.00779 4.16346 4.32306 4.34672 4.44734 4.60824 4.68656 4.84616 4.88100 5.04339 5.30834 5.55667 5.84487 6.11421 6.16849 6.56529 6.71982 6.78326 6.96210 7.59885 8.93187 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.007945 C = 0.007049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.995866 B = 3523.363515 C = 3971.266210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.314 6.314 3 C 0.098 3.902 4 C -0.174 4.174 5 C -0.094 4.094 6 C 0.245 3.755 7 H 0.011 0.989 8 N -0.831 5.831 9 C -0.616 4.616 10 H 0.033 0.967 11 C -0.007 4.007 12 N -0.915 5.915 13 Si 1.111 2.889 14 H -0.279 1.279 15 H -0.277 1.277 16 H -0.281 1.281 17 C 0.052 3.948 18 F -0.149 7.149 19 C -0.134 4.134 20 C 0.087 3.913 21 O -0.485 6.485 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.131 0.869 25 H 0.148 0.852 26 H 0.333 0.667 27 H 0.322 0.678 28 H 0.279 0.721 29 H 0.167 0.833 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -14.692 3.604 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.228 6.228 3 C 0.051 3.949 4 C -0.193 4.193 5 C -0.097 4.097 6 C 0.135 3.865 7 H 0.028 0.972 8 N -0.361 5.361 9 C -0.654 4.654 10 H 0.051 0.949 11 C -0.212 4.212 12 N -0.549 5.549 13 Si 0.934 3.066 14 H -0.205 1.205 15 H -0.202 1.202 16 H -0.206 1.206 17 C 0.032 3.968 18 F -0.128 7.128 19 C -0.153 4.153 20 C 0.041 3.959 21 O -0.297 6.297 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.149 0.851 25 H 0.166 0.834 26 H 0.148 0.852 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.184 0.816 30 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.033 -12.839 1.966 13.338 hybrid contribution 1.023 -1.535 1.659 2.481 sum 4.057 -14.375 3.625 15.370 Atomic orbital electron populations 1.23411 0.76561 1.05994 1.02039 1.86103 1.23189 1.24990 1.88490 1.19428 0.91899 0.85051 0.98494 1.20865 1.01020 0.89915 1.07497 1.21224 0.93441 0.98433 0.96636 1.17922 0.85280 0.87994 0.95276 0.97159 1.59115 1.20521 1.51504 1.04943 1.21874 1.39188 1.13073 0.91280 0.94907 1.26949 0.92344 0.93624 1.08234 1.70644 1.41480 1.40800 1.02025 0.83022 0.76953 0.75930 0.70715 1.20516 1.20193 1.20618 1.17501 0.90561 0.80681 1.08081 1.91431 1.83140 1.43838 1.94348 1.21261 1.01825 0.89322 1.02920 1.17174 0.86024 0.86220 1.06508 1.84840 1.71406 1.38246 1.35218 0.91685 0.92731 0.85104 0.83438 0.85224 0.86596 0.90930 0.81578 0.73404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.81 113.37 1.11 1.39 16 2 O -0.31 -8.58 10.28 -80.02 -0.82 -9.40 16 3 C 0.10 3.09 6.70 22.56 0.15 3.24 16 4 C -0.17 -6.12 8.26 22.35 0.18 -5.94 16 5 C -0.09 -3.99 4.99 -19.81 -0.10 -4.09 16 6 C 0.25 12.29 2.24 43.42 0.10 12.39 16 7 H 0.01 0.60 7.65 -2.39 -0.02 0.58 16 8 N -0.83 -36.84 7.38 -174.96 -1.29 -38.13 16 9 C -0.62 -34.95 8.71 25.60 0.22 -34.72 16 10 H 0.03 1.91 7.74 -2.91 -0.02 1.89 16 11 C -0.01 -0.42 5.39 84.65 0.46 0.03 16 12 N -0.91 -55.77 13.51 21.45 0.29 -55.48 16 13 Si 1.11 51.34 29.90 68.60 2.05 53.39 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 C 0.05 2.11 7.24 22.37 0.16 2.27 16 18 F -0.15 -6.67 16.55 44.97 0.74 -5.92 16 19 C -0.13 -4.34 9.96 22.39 0.22 -4.12 16 20 C 0.09 2.63 6.72 22.56 0.15 2.78 16 21 O -0.49 -12.05 13.29 -79.56 -1.06 -13.11 16 22 H 0.06 1.16 7.65 -2.38 -0.02 1.15 16 23 H 0.05 1.14 7.67 -2.39 -0.02 1.12 16 24 H 0.13 1.72 8.14 -2.39 -0.02 1.71 16 25 H 0.15 4.72 4.52 -2.91 -0.01 4.70 16 26 H 0.33 13.75 7.20 -89.70 -0.65 13.11 16 27 H 0.32 12.28 9.06 -89.69 -0.81 11.47 16 28 H 0.28 17.14 6.39 -92.70 -0.59 16.55 16 29 H 0.17 4.41 8.06 -2.91 -0.02 4.38 16 30 H 0.41 5.74 9.06 -74.06 -0.67 5.07 16 Total: -1.00 -70.59 265.39 1.84 -68.75 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.74 Total: 26.67 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 2.66 Total: -26.77 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -1.00 Total: -93.61 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.88 Total: -22.52 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.74 Total: -5.92 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Total: -70.59 1.84 -68.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238423884.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.700 kcal (2) G-P(sol) polarization free energy of solvation -70.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds