Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31074 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48503 * 109.47013 * 270.00103 * 3 2 1 5 5 H 1.48491 * 109.47151 * 30.00105 * 3 2 1 6 6 H 1.48502 * 109.46839 * 150.00265 * 3 2 1 7 7 C 1.39726 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99985 * 180.02562 * 7 2 1 9 9 C 1.39563 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.40092 * 125.98976 * 359.96298 * 9 7 2 11 11 C 1.37933 * 107.76577 * 179.14633 * 10 9 7 12 12 C 1.39965 * 107.89854 * 0.72166 * 11 10 9 13 13 C 1.40442 * 131.09047 * 179.34686 * 12 11 10 14 14 C 1.38364 * 119.90715 * 179.97438 * 13 12 11 15 15 N 1.38626 * 120.49182 * 179.97438 * 14 13 12 16 16 C 1.46385 * 119.01179 * 359.97438 * 14 13 12 17 17 C 1.37965 * 132.60213 * 179.97438 * 16 14 13 18 18 C 1.39987 * 107.01982 * 179.74078 * 17 16 14 19 19 C 1.35403 * 107.90409 * 0.26416 * 18 17 16 20 20 N 1.36190 * 108.93638 * 0.02562 * 19 18 17 21 21 N 1.37872 * 108.12956 * 359.70741 * 12 11 10 22 22 H 0.97001 * 120.00143 * 359.97438 * 1 2 3 23 23 H 1.07994 * 126.11070 * 0.02562 * 10 9 7 24 24 H 1.07993 * 126.04895 * 180.08891 * 11 10 9 25 25 H 1.08003 * 120.05038 * 359.95455 * 13 12 11 26 26 H 0.96998 * 119.99720 * 180.02562 * 15 14 13 27 27 H 0.96996 * 120.00440 * 0.02562 * 15 14 13 28 28 H 1.08002 * 126.49286 * 0.02562 * 17 16 14 29 29 H 1.08004 * 126.04460 * 180.26928 * 18 17 16 30 30 H 1.08005 * 125.53153 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 2.4921 2.0465 -1.4001 5 1 1.4421 2.6526 0.7000 6 1 3.5422 1.4402 0.7000 7 6 2.0094 -1.2100 -0.0005 8 1 3.0895 -1.2100 -0.0001 9 6 1.3117 -2.4187 -0.0005 10 6 -0.0815 -2.5650 0.0007 11 6 -0.3630 -3.9152 -0.0193 12 6 0.8531 -4.6082 -0.0163 13 6 1.1310 -5.9848 -0.0191 14 6 2.4432 -6.4237 -0.0154 15 7 2.7314 -7.7797 -0.0176 16 6 3.5226 -5.4348 -0.0091 17 6 4.8971 -5.5527 -0.0040 18 6 5.4198 -4.2541 -0.0054 19 6 4.3799 -3.3869 -0.0052 20 7 3.2155 -4.0931 -0.0032 21 7 1.8745 -3.6822 -0.0011 22 1 -0.4850 0.8400 0.0004 23 1 -0.8056 -1.7638 0.0014 24 1 -1.3474 -4.3592 -0.0251 25 1 0.3217 -6.7000 -0.0238 26 1 3.6539 -8.0794 -0.0146 27 1 2.0107 -8.4287 -0.0221 28 1 5.4629 -6.4727 -0.0041 29 1 6.4672 -3.9906 -0.0064 30 1 4.4608 -2.3099 -0.0057 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238628477.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = 143.226590 kcal Electronic energy + Delta-G solvation = -16641.251724 eV Core-core repulsion = 14018.291151 eV Total energy + Delta-G solvation = -2622.960573 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08989 -38.60553 -35.66586 -33.88110 -32.04869 -30.67091 -28.17147 -27.67356 -27.32195 -23.99163 -21.49338 -21.12274 -20.38277 -18.75913 -18.22532 -16.65535 -16.48137 -15.37378 -14.95780 -14.91563 -14.54227 -13.88352 -13.32517 -12.59061 -12.28508 -12.26955 -12.11399 -11.71750 -11.53870 -11.45044 -11.32395 -11.14720 -10.64260 -10.36568 -9.86494 -9.59020 -8.91919 -8.14284 -7.65230 -7.12942 -6.75063 -6.16843 -4.16988 1.92628 2.22399 2.64746 2.99603 3.00791 3.04678 3.46379 3.82367 4.06866 4.28118 4.62526 5.03334 5.18991 5.28549 5.64805 5.77811 6.03615 6.24559 6.45470 6.59133 6.63759 6.71184 6.93906 7.07700 7.12034 7.27973 7.43124 7.57903 7.70881 7.96177 8.05035 8.18804 8.28689 8.58312 8.70148 8.81806 9.18423 10.12414 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.008734 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.724967 B = 3205.049435 C = 4152.916946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.073 3.927 3 Si 0.927 3.073 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.076 0.924 9 C 0.229 3.771 10 C -0.250 4.250 11 C -0.141 4.141 12 C -0.059 4.059 13 C -0.152 4.152 14 C 0.135 3.865 15 N -0.871 5.871 16 C 0.049 3.951 17 C -0.197 4.197 18 C -0.194 4.194 19 C -0.003 4.003 20 N -0.216 5.216 21 N -0.298 5.298 22 H 0.281 0.719 23 H 0.175 0.825 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.390 0.610 27 H 0.395 0.605 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 -5.930 -0.034 7.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.144 4.144 3 Si 0.752 3.248 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.482 4.482 8 H 0.094 0.906 9 C 0.121 3.879 10 C -0.274 4.274 11 C -0.168 4.168 12 C -0.158 4.158 13 C -0.180 4.180 14 C 0.033 3.967 15 N -0.413 5.413 16 C -0.065 4.065 17 C -0.222 4.222 18 C -0.219 4.219 19 C -0.136 4.136 20 N 0.028 4.972 21 N -0.074 5.074 22 H 0.092 0.908 23 H 0.192 0.808 24 H 0.139 0.861 25 H 0.139 0.861 26 H 0.217 0.783 27 H 0.223 0.777 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.357 -5.552 -0.018 7.057 hybrid contribution 0.535 0.345 -0.014 0.637 sum 4.892 -5.207 -0.033 7.145 Atomic orbital electron populations 1.69753 1.07191 1.28752 1.36309 1.25633 0.95031 1.00918 0.92856 0.85985 0.79929 0.79641 0.79291 1.19292 1.19852 1.18665 1.18528 0.94375 0.88925 1.46359 0.90634 1.18424 0.90954 0.79611 0.98890 1.21749 0.93055 0.95170 1.17382 1.20777 0.93389 0.94437 1.08215 1.17731 0.85934 0.87239 1.24943 1.19558 0.93188 0.93042 1.12255 1.17317 0.90270 0.83137 1.06000 1.41452 1.09465 1.02683 1.87653 1.19197 0.93180 0.81064 1.13018 1.20586 0.90214 0.97702 1.13725 1.20512 0.97527 0.92079 1.11768 1.21966 0.80924 0.98578 1.12158 1.43166 0.96323 1.05590 1.52124 1.44233 0.90091 1.07876 1.65198 0.90785 0.80834 0.86075 0.86099 0.78287 0.77727 0.84386 0.83798 0.81373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.87 10.20 55.54 0.57 -19.31 16 2 C 0.07 1.80 5.49 -17.32 -0.10 1.71 16 3 Si 0.93 18.42 29.56 -169.99 -5.02 13.39 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.45 -11.86 9.08 -38.53 -0.35 -12.21 16 8 H 0.08 1.90 5.28 -52.48 -0.28 1.62 16 9 C 0.23 6.34 6.82 -83.75 -0.57 5.77 16 10 C -0.25 -6.69 9.70 -39.00 -0.38 -7.07 16 11 C -0.14 -3.45 10.91 -39.05 -0.43 -3.88 16 12 C -0.06 -1.47 6.77 -83.67 -0.57 -2.03 16 13 C -0.15 -3.25 9.98 -38.71 -0.39 -3.63 16 14 C 0.14 2.68 6.99 -81.47 -0.57 2.12 16 15 N -0.87 -12.51 9.05 33.66 0.30 -12.20 16 16 C 0.05 1.05 6.96 -82.08 -0.57 0.47 16 17 C -0.20 -3.57 10.73 -39.03 -0.42 -3.99 16 18 C -0.19 -3.49 10.81 -39.94 -0.43 -3.92 16 19 C 0.00 -0.07 11.15 -16.63 -0.19 -0.26 16 20 N -0.22 -5.21 3.98 -9.31 -0.04 -5.24 16 21 N -0.30 -7.89 4.05 -8.13 -0.03 -7.92 16 22 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 23 H 0.17 4.68 5.61 -52.49 -0.29 4.39 16 24 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 25 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 26 H 0.39 4.78 8.66 -40.82 -0.35 4.43 16 27 H 0.39 4.67 8.84 -40.82 -0.36 4.31 16 28 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.14 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.17 3.42 5.95 -52.48 -0.31 3.11 16 LS Contribution 258.43 15.07 3.89 3.89 Total: -1.00 -30.11 258.43 -7.70 -37.81 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -2.42 Total: 16.49 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -4.95 Total: -26.92 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.80 Total: -44.68 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.11 -7.70 -37.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238628477.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.037 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds