Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31074 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48503 * 109.47013 * 270.00103 * 3 2 1 5 5 H 1.48491 * 109.47151 * 30.00105 * 3 2 1 6 6 H 1.48502 * 109.46839 * 150.00265 * 3 2 1 7 7 C 1.39726 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99985 * 180.02562 * 7 2 1 9 9 C 1.39563 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.40092 * 125.98976 * 359.96298 * 9 7 2 11 11 C 1.37933 * 107.76577 * 179.14633 * 10 9 7 12 12 C 1.39965 * 107.89854 * 0.72166 * 11 10 9 13 13 C 1.40442 * 131.09047 * 179.34686 * 12 11 10 14 14 C 1.38364 * 119.90715 * 179.97438 * 13 12 11 15 15 N 1.38626 * 120.49182 * 179.97438 * 14 13 12 16 16 C 1.46385 * 119.01179 * 359.97438 * 14 13 12 17 17 C 1.37965 * 132.60213 * 179.97438 * 16 14 13 18 18 C 1.39987 * 107.01982 * 179.74078 * 17 16 14 19 19 C 1.35403 * 107.90409 * 0.26416 * 18 17 16 20 20 N 1.36190 * 108.93638 * 0.02562 * 19 18 17 21 21 N 1.37872 * 108.12956 * 359.70741 * 12 11 10 22 22 H 0.97001 * 120.00143 * 359.97438 * 1 2 3 23 23 H 1.07994 * 126.11070 * 0.02562 * 10 9 7 24 24 H 1.07993 * 126.04895 * 180.08891 * 11 10 9 25 25 H 1.08003 * 120.05038 * 359.95455 * 13 12 11 26 26 H 0.96998 * 119.99720 * 180.02562 * 15 14 13 27 27 H 0.96996 * 120.00440 * 0.02562 * 15 14 13 28 28 H 1.08002 * 126.49286 * 0.02562 * 17 16 14 29 29 H 1.08004 * 126.04460 * 180.26928 * 18 17 16 30 30 H 1.08005 * 125.53153 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 2.4921 2.0465 -1.4001 5 1 1.4421 2.6526 0.7000 6 1 3.5422 1.4402 0.7000 7 6 2.0094 -1.2100 -0.0005 8 1 3.0895 -1.2100 -0.0001 9 6 1.3117 -2.4187 -0.0005 10 6 -0.0815 -2.5650 0.0007 11 6 -0.3630 -3.9152 -0.0193 12 6 0.8531 -4.6082 -0.0163 13 6 1.1310 -5.9848 -0.0191 14 6 2.4432 -6.4237 -0.0154 15 7 2.7314 -7.7797 -0.0176 16 6 3.5226 -5.4348 -0.0091 17 6 4.8971 -5.5527 -0.0040 18 6 5.4198 -4.2541 -0.0054 19 6 4.3799 -3.3869 -0.0052 20 7 3.2155 -4.0931 -0.0032 21 7 1.8745 -3.6822 -0.0011 22 1 -0.4850 0.8400 0.0004 23 1 -0.8056 -1.7638 0.0014 24 1 -1.3474 -4.3592 -0.0251 25 1 0.3217 -6.7000 -0.0238 26 1 3.6539 -8.0794 -0.0146 27 1 2.0107 -8.4287 -0.0221 28 1 5.4629 -6.4727 -0.0041 29 1 6.4672 -3.9906 -0.0064 30 1 4.4608 -2.3099 -0.0057 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238628477.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = 124.460048 kcal Electronic energy + Delta-G solvation = -16642.065502 eV Core-core repulsion = 14018.291151 eV Total energy + Delta-G solvation = -2623.774351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.76951 -40.36516 -37.20609 -35.67512 -33.76531 -32.30051 -29.81513 -29.38933 -29.08384 -25.75502 -23.12659 -22.84962 -22.07629 -20.52551 -19.91789 -18.27211 -18.17273 -17.05102 -16.67114 -16.46624 -16.11384 -15.48232 -14.96214 -14.28276 -14.06938 -13.94537 -13.78824 -13.38452 -13.15641 -13.00855 -12.88752 -12.72013 -12.36000 -12.07765 -11.71934 -11.35174 -10.55098 -9.76462 -9.30582 -8.95112 -8.55354 -7.89715 -6.05293 0.30098 0.51778 0.94789 1.36427 1.42448 1.51311 1.93024 2.17264 2.26823 2.82391 2.83616 3.25413 3.47891 3.72493 4.17151 4.22381 4.42411 4.69912 4.83283 4.99777 5.06610 5.15532 5.21020 5.33298 5.43091 5.59197 5.81683 5.86344 5.99493 6.07554 6.31506 6.63245 6.69630 6.82910 6.93618 7.13947 7.34305 8.35604 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.008734 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.724967 B = 3205.049435 C = 4152.916946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.259 1.259 7 C -0.483 4.483 8 H 0.076 0.924 9 C 0.186 3.814 10 C -0.281 4.281 11 C -0.171 4.171 12 C -0.052 4.052 13 C -0.212 4.212 14 C 0.183 3.817 15 N -0.842 5.842 16 C -0.003 4.003 17 C -0.165 4.165 18 C -0.171 4.171 19 C -0.037 4.037 20 N -0.239 5.239 21 N -0.315 5.315 22 H 0.288 0.712 23 H 0.162 0.838 24 H 0.145 0.855 25 H 0.148 0.852 26 H 0.407 0.593 27 H 0.412 0.588 28 H 0.187 0.813 29 H 0.190 0.810 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.595 -8.013 -0.033 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.183 1.183 7 C -0.517 4.517 8 H 0.094 0.906 9 C 0.078 3.922 10 C -0.305 4.305 11 C -0.197 4.197 12 C -0.153 4.153 13 C -0.241 4.241 14 C 0.076 3.924 15 N -0.384 5.384 16 C -0.114 4.114 17 C -0.191 4.191 18 C -0.196 4.196 19 C -0.168 4.168 20 N 0.003 4.997 21 N -0.090 5.090 22 H 0.099 0.901 23 H 0.179 0.821 24 H 0.163 0.837 25 H 0.166 0.834 26 H 0.237 0.763 27 H 0.243 0.757 28 H 0.204 0.796 29 H 0.207 0.793 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.395 -7.701 -0.017 10.676 hybrid contribution -0.122 0.636 -0.016 0.647 sum 7.273 -7.065 -0.032 10.140 Atomic orbital electron populations 1.69833 1.08566 1.29966 1.36829 1.26628 0.95922 1.03992 0.91959 0.84911 0.78542 0.74937 0.79530 1.18603 1.18603 1.18279 1.18814 0.94582 0.89776 1.48548 0.90591 1.18752 0.91720 0.80656 1.01094 1.21706 0.93200 0.96019 1.19614 1.21009 0.94773 0.93770 1.10187 1.18420 0.85847 0.88840 1.22154 1.19716 0.94981 0.91927 1.17524 1.17550 0.89548 0.85041 1.00268 1.41465 1.11394 1.00695 1.84841 1.19968 0.95126 0.80566 1.15764 1.21272 0.88731 0.99528 1.09539 1.21097 0.98638 0.91233 1.08615 1.22435 0.81400 0.99408 1.13605 1.43598 0.95551 1.06948 1.53641 1.44433 0.91890 1.07858 1.64860 0.90076 0.82147 0.83694 0.83421 0.76280 0.75704 0.79555 0.79322 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.82 10.20 21.80 0.22 -43.60 16 2 C 0.03 1.49 5.49 85.17 0.47 1.95 16 3 Si 1.00 38.82 29.56 68.60 2.03 40.84 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.48 -27.17 9.08 22.95 0.21 -26.96 16 8 H 0.08 4.05 5.28 -2.91 -0.02 4.04 16 9 C 0.19 10.94 6.82 38.89 0.27 11.21 16 10 C -0.28 -16.25 9.70 22.65 0.22 -16.03 16 11 C -0.17 -8.86 10.91 22.62 0.25 -8.62 16 12 C -0.05 -2.67 6.77 39.15 0.26 -2.40 16 13 C -0.21 -8.92 9.98 22.84 0.23 -8.69 16 14 C 0.18 6.74 6.99 40.22 0.28 7.02 16 15 N -0.84 -20.14 9.05 -47.43 -0.43 -20.57 16 16 C 0.00 -0.12 6.96 40.29 0.28 0.16 16 17 C -0.17 -5.15 10.73 22.63 0.24 -4.90 16 18 C -0.17 -5.45 10.81 22.04 0.24 -5.22 16 19 C -0.04 -1.54 11.15 83.36 0.93 -0.61 16 20 N -0.24 -11.52 3.98 -183.37 -0.73 -12.25 16 21 N -0.32 -17.38 4.05 -179.62 -0.73 -18.11 16 22 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 23 H 0.16 9.45 5.61 -2.91 -0.02 9.43 16 24 H 0.15 6.43 8.06 -2.91 -0.02 6.41 16 25 H 0.15 5.18 8.06 -2.91 -0.02 5.16 16 26 H 0.41 7.51 8.66 -92.71 -0.80 6.71 16 27 H 0.41 7.75 8.84 -92.71 -0.82 6.94 16 28 H 0.19 3.96 8.06 -2.91 -0.02 3.93 16 29 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.16 6.77 5.95 -2.91 -0.02 6.75 16 Total: -1.00 -70.97 258.43 3.82 -67.14 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: -0.41 Total: 39.62 kcal Atomic # 6 Polarization: -56.96 SS G_CDS: 3.87 Total: -53.09 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -1.66 Total: -94.52 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.84 kcal Total: -70.97 3.82 -67.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238628477.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.605 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds